mRNA_P-wetherbeei_contig764.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig764.1.1
Unique NamemRNA_P-wetherbeei_contig764.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig764.1.1 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.040e-38
Identity = 85/168 (50.60%), Postives = 114/168 (67.86%), Query Frame = 1 
Query:    1 QALQLYKTSYARFKAQEKLDEAEQLITDGAAAMARRKELNAATELGVLLVESFEENSRPVQEKYLKQLQSVADAWPCPGIELS-----AVAWAGGSAELAAKDLRVRLARAYLVTDDYGGAARNFATAGAGAVAEYATVLRDWSRMGYKSERDLFLCRAVLHVLSLNR 489
            +ALQLYKTSY+R KAQ +LD+AE+L+T GA AM++  ELNAATELG+L+V SFEEN R V E  L QL+ VA A   PG+E+S     A+ W   +   AA +LR+ +AR+ + T +   AAR FA +G     EY+ +++ W+  GY  E DLF+CRAVLH LS +R
Sbjct:   29 EALQLYKTSYSRLKAQGRLDDAEELLTAGAIAMSKENELNAATELGLLIVTSFEENGREVDEARLSQLKRVAVAMT-PGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSG--CPTEYSALVKQWAAKGYPGETDLFICRAVLHTLSYDR 193
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BLAST of mRNA_P-wetherbeei_contig764.1.1 vs. uniprot
Match: A0A836CH96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH96_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.180e-11
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:   46 QEKLDEAEQLITDGAAAMARRKELNAATELGVLLVESFE----------ENSRPVQEKYLKQLQSVADAWPCPGIELS----AVAWAGGSAELAAKDLRVRLARAYLVTDDYGGAARNFATAG 372
            Q K++EA++LIT GA +MA   E NAATELG+LLVES E          E + P  +K L +L ++ DA      +++    AV +A GS E  A+ LR+ LAR+Y   DD G AAR +A  G
Sbjct:   18 QGKVEEAQELITVGACSMAEHNERNAATELGILLVESLEGEQGETGSDPEAAMP-SDKGLVRLVAIKDAMSVSTEQIAFLKHAVRYASGSQEPQAQVLRLSLARSYEEMDDIGPAARQYAIMG 139
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BLAST of mRNA_P-wetherbeei_contig764.1.1 vs. uniprot
Match: A0A3M6VND9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VND9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.980e-9
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1 
Query:    4 ALQLYKTSYARF-KAQE----KLDEAEQLITDGAAAMARRKELNAATELGVLLVESFEENSRPVQEKYLKQLQSVADAW---PCPGIELS-----AVAWAG--GSAELAAKDLRVRLARAYLVTDDYGGAARNFATAGAGAVAEYATVLRDWSRMGYKSERDLFLCRAVLHVLSL 483
            ALQ+YKT + R  K +E    + ++A  L  +      + +E  AA E+  L++  F +   PV E++ ++++ +  A+   P    +L+     AV W+   G+ +    +L++ LARAY   +++  A ++F  A      E A +L  WS +GY SE DL+L RAVL +LSL
Sbjct:   47 ALQMYKTLFMRLLKGEEPNITQQEKAINLAFNATIDFVKNEENKAAIEMANLMISVFTDYHHPVDEQHKQRIRDIVSAFTLKPKFSTDLASFLKNAVKWSAIEGARKRGDPELQLLLARAYQTAEEFSNAMKHFLHAE--NPQELAEMLFQWSTLGYPSESDLYLTRAVLQLLSL 219
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BLAST of mRNA_P-wetherbeei_contig764.1.1 vs. uniprot
Match: A9RVM5_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVM5_PHYPA)

HSP 1 Score: 53.9 bits (128), Expect = 1.720e-5
Identity = 28/76 (36.84%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    1 QALQLYKTSYARFKAQEKLDEAEQLITDGAAAMARRKELNAATELGVLLVESFEENSRPVQEKYLKQLQSVADAWP 228
            +A Q+YKT ++R+   +K +EA +L+  GA AM    E+   TELGVLL+++F     P     L Q++++ +A+P
Sbjct:   28 EAQQMYKTIHSRYMHAKKYNEAIELLNSGAVAMLNHGEVTCGTELGVLLIQTFNVAKLPFDSSTLDQIRTIYNAYP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig764.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G636_ECTSI2.040e-3850.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CH96_9STRA3.180e-1143.09Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A3M6VND9_9STRA1.980e-931.43Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A9RVM5_PHYPA1.720e-536.84Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig764contigP-wetherbeei_contig764:166..1082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G636
Preferred nameGET4
PFAMsDUF410
Model size489
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006508,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0015031,GO:0015833,GO:0016043,GO:0019538,GO:0030163,GO:0031647,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0036506,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0045185,GO:0046907,GO:0050896,GO:0051087,GO:0051179,GO:0051205,GO:0051220,GO:0051234,GO:0051235,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071816,GO:0071818,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1904378
Exons3
Evalue3.35e-39
EggNOG OGsKOG3024@1|root,KOG3024@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family UPF0363
Ec32 orthologEc-11_004990.1
Descriptionprotein insertion into ER membrane
Cds size489
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186992.9495916-CDS-P-wetherbeei_contig764:165..4081683186992.9495916-CDS-P-wetherbeei_contig764:165..408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig764 166..408 -
1683186992.9589348-CDS-P-wetherbeei_contig764:745..8771683186992.9589348-CDS-P-wetherbeei_contig764:745..877Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig764 746..877 -
1683186992.9670932-CDS-P-wetherbeei_contig764:968..10821683186992.9670932-CDS-P-wetherbeei_contig764:968..1082Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig764 969..1082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig764.1.1prot_P-wetherbeei_contig764.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig764 166..1082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig764.1.1

>prot_P-wetherbeei_contig764.1.1 ID=prot_P-wetherbeei_contig764.1.1|Name=mRNA_P-wetherbeei_contig764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
QALQLYKTSYARFKAQEKLDEAEQLITDGAAAMARRKELNAATELGVLLV
ESFEENSRPVQEKYLKQLQSVADAWPCPGIELSAVAWAGGSAELAAKDLR
VRLARAYLVTDDYGGAARNFATAGAGAVAEYATVLRDWSRMGYKSERDLF
LCRAVLHVLSLNR
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mRNA from alignment at P-wetherbeei_contig764:166..1082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig764.1.1 ID=mRNA_P-wetherbeei_contig764.1.1|Name=mRNA_P-wetherbeei_contig764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=917bp|location=Sequence derived from alignment at P-wetherbeei_contig764:166..1082- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCCCTGCAGCTGTACAAGACGAGCTATGCGCGCTTCAAGGCACAAGA
GAAGCTCGATGAGGCAGAGCAACTTATTACGGATGGTGCAGCTGCCATGG
CTCGACGAAAAGAGGTGCGTTGTTTCCTACTGATGGAGTCCGAGAGGGAA
GAAATGATCACATGTCTCATCGTTTCTCCATATGTACCCTTCTTCCCCGC
CGCAGCTCAACGCCGCGACGGAGCTCGGGGTATTGCTGGTCGAAAGCTTC
GAGGAGAACTCTCGGCCCGTGCAAGAAAAGTATTTGAAGCAGCTGCAGAG
CGTTGCCGATGCATGGCCTTGCCCCGGCATTGAGCTCGTCGCGTTCCTCA
AGGCAAGTCGATCAGACGACTGAAAGCACTAATGCCTCCCAGGACCACCT
AGCAACTCGTATATCTTGGGTGAAGGTCTTCTTCCATTTCAACCTGTAAT
CCATTTTCTAACGTTCTTTGCTCTCCGTCCAGTGCAAATTGCAAACCACT
TTATGGTTTTGCAGCCTCGAAAAGGCCGCATGCCACGTGCCCTTCCTTCG
CGCCCGACAAGCTGCCTGAGAGATGGCGCAAGTGCCGTGCCGCCGCTGTT
TTCTTAATTTGACGCCGCTATATTCCCCCCGCCGCCGTCACCAAAACCTT
TCCGCGCCCCTCTGTCACGCACAGTCGGCCGTGGCGTGGGCTGGCGGCTC
GGCGGAACTTGCCGCCAAGGACCTCCGCGTGCGACTCGCCCGGGCGTACC
TCGTAACGGATGACTATGGTGGCGCCGCCCGCAATTTTGCGACGGCCGGT
GCGGGCGCCGTTGCCGAGTACGCGACCGTGCTGCGGGATTGGAGCCGCAT
GGGGTACAAGTCGGAGCGGGACCTTTTTCTGTGCCGCGCCGTGCTTCACG
TTTTGTCGCTCAACCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig764:166..1082-

>mRNA_P-wetherbeei_contig764.1.1 ID=mRNA_P-wetherbeei_contig764.1.1|Name=mRNA_P-wetherbeei_contig764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig764:166..1082- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCCCTGCAGCTGTACAAGACGAGCTATGCGCGCTTCAAGGCACAAGA
GAAGCTCGATGAGGCAGAGCAACTTATTACGGATGGTGCAGCTGCCATGG
CTCGACGAAAAGAGCTCAACGCCGCGACGGAGCTCGGGGTATTGCTGGTC
GAAAGCTTCGAGGAGAACTCTCGGCCCGTGCAAGAAAAGTATTTGAAGCA
GCTGCAGAGCGTTGCCGATGCATGGCCTTGCCCCGGCATTGAGCTCTCGG
CCGTGGCGTGGGCTGGCGGCTCGGCGGAACTTGCCGCCAAGGACCTCCGC
GTGCGACTCGCCCGGGCGTACCTCGTAACGGATGACTATGGTGGCGCCGC
CCGCAATTTTGCGACGGCCGGTGCGGGCGCCGTTGCCGAGTACGCGACCG
TGCTGCGGGATTGGAGCCGCATGGGGTACAAGTCGGAGCGGGACCTTTTT
CTGTGCCGCGCCGTGCTTCACGTTTTGTCGCTCAACCGG
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