mRNA_P-wetherbeei_contig762.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig762.4.1
Unique NamemRNA_P-wetherbeei_contig762.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig762.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig762contigP-wetherbeei_contig762:4863..5520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size459
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.5596426-UTR-P-wetherbeei_contig762:4862..49231683186991.5596426-UTR-P-wetherbeei_contig762:4862..4923Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig762 4863..4923 -
1683186991.6019392-UTR-P-wetherbeei_contig762:5491..55201683186991.6019392-UTR-P-wetherbeei_contig762:5491..5520Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig762 5492..5520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.5711632-CDS-P-wetherbeei_contig762:4923..50241683186991.5711632-CDS-P-wetherbeei_contig762:4923..5024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig762 4924..5024 -
1683186991.5818012-CDS-P-wetherbeei_contig762:5223..54911683186991.5818012-CDS-P-wetherbeei_contig762:5223..5491Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig762 5224..5491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig762.4.1prot_P-wetherbeei_contig762.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig762 4924..5491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig762.4.1

>prot_P-wetherbeei_contig762.4.1 ID=prot_P-wetherbeei_contig762.4.1|Name=mRNA_P-wetherbeei_contig762.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MVSISDTMLVYCLCLALLSVCALACFYRYIADPIYQYLEERHRRRLVGKT
VVEDPGEPEPEETKADEVKHWYLNDVLQISSDEEYEMGPEDKDYKAKEEK
RQREKRARKHGRKRSDASRSSA*
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mRNA from alignment at P-wetherbeei_contig762:4863..5520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig762.4.1 ID=mRNA_P-wetherbeei_contig762.4.1|Name=mRNA_P-wetherbeei_contig762.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=658bp|location=Sequence derived from alignment at P-wetherbeei_contig762:4863..5520- (Phaeothamnion wetherbeei SAG_119_79)
GGAAAACCCAGTTCTTCACGAGAGGCAAAATGGTTTCAATTTCCGACACC
ATGCTCGTATATTGCTTGTGCCTTGCTCTCCTCTCTGTGTGCGCCTTGGC
GTGCTTCTATCGTTACATCGCGGACCCCATTTACCAATACCTCGAGGAGC
GACACCGGCGGAGGCTAGTCGGCAAGACCGTCGTGGAGGATCCTGGAGAG
CCCGAGCCCGAGGAAACTAAGGCGGATGAGGTGAAACATTGGTACCTCAA
CGATGTCCTGCAGATTAGCTCGGACGAAGAGTACGAAATGGGACCCGGTA
AGAAAATAAATAGGCTTGGCATACCGTTTTCCCTAGCTGGAAAAGGGGTG
AAAAGGCGGGGAGAAACAGAGCTAGAAGGGTGTTTAGTTATAGGACATTT
CCGCTACGGCTTGCTAGAACCACAACAGGAAAACCACCGTGGCTTGCATT
GATGCCTTCCTCCCCGTCCTTCTCCTATCTCTCCGGCTGCACACAGAGGA
CAAGGACTACAAGGCGAAGGAGGAGAAGCGGCAGCGGGAGAAGCGGGCAA
GGAAACACGGCCGAAAGCGCTCCGACGCCAGCCGAAGTTCCGCTTAGTTT
GATATTCCATTGTAAAGAACTGGTTTATACTATCGTGTCCACGAAAAAGG
CAGCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig762:4863..5520-

>mRNA_P-wetherbeei_contig762.4.1 ID=mRNA_P-wetherbeei_contig762.4.1|Name=mRNA_P-wetherbeei_contig762.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig762:4863..5520- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTCAATTTCCGACACCATGCTCGTATATTGCTTGTGCCTTGCTCT
CCTCTCTGTGTGCGCCTTGGCGTGCTTCTATCGTTACATCGCGGACCCCA
TTTACCAATACCTCGAGGAGCGACACCGGCGGAGGCTAGTCGGCAAGACC
GTCGTGGAGGATCCTGGAGAGCCCGAGCCCGAGGAAACTAAGGCGGATGA
GGTGAAACATTGGTACCTCAACGATGTCCTGCAGATTAGCTCGGACGAAG
AGTACGAAATGGGACCCGAGGACAAGGACTACAAGGCGAAGGAGGAGAAG
CGGCAGCGGGAGAAGCGGGCAAGGAAACACGGCCGAAAGCGCTCCGACGC
CAGCCGAAGTTCCGCTTAG
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