mRNA_P-wetherbeei_contig7617.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7617.1.1
Unique NamemRNA_P-wetherbeei_contig7617.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7617.1.1 vs. uniprot
Match: A0A7R9XTR3_9VIRI (Hypothetical protein (Fragment) n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XTR3_9VIRI)

HSP 1 Score: 50.8 bits (120), Expect = 4.990e-6
Identity = 23/49 (46.94%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 VDARCRAVLAEAENCKLALRNKLRLEMLRLPKRVRAMPLREFCEEFGEN 147
            V++RC  ++  AE+  +ALR + R+++++LPK+VR+MPL EF +EFGE+
Sbjct:   62 VESRCAKLMEVAEDAVVALRAEYRVQLMKLPKKVRSMPLAEFRKEFGES 110
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BLAST of mRNA_P-wetherbeei_contig7617.1.1 vs. uniprot
Match: A0A5J4Z1C8_PORPP (Nbl1_Borealin_N domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1C8_PORPP)

HSP 1 Score: 50.4 bits (119), Expect = 7.130e-6
Identity = 20/47 (42.55%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 VDARCRAVLAEAENCKLALRNKLRLEMLRLPKRVRAMPLREFCEEFG 141
            +DARC  +   ++N   ++RN  R++M++LP++VR++PLREF +E+G
Sbjct:  234 IDARCSELRTLSQNAAFSIRNAYRVQMMKLPRKVRSLPLREFVQEYG 280
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BLAST of mRNA_P-wetherbeei_contig7617.1.1 vs. uniprot
Match: A0A5A8DJZ9_CAFRO (Nbl1_Borealin_N domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJZ9_CAFRO)

HSP 1 Score: 47.0 bits (110), Expect = 5.170e-5
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 VDARCRAVLAEAENCKLALRNKLRLEMLRLPKRVRAMPLREFCEEFGEN 147
            VD RC  V+A++E     LR+   ++M +LPKR+RAM +REF E+ G N
Sbjct:   38 VDRRCDKVVADSEAAASELRSAFSMQMAKLPKRIRAMTMREFIEQCGGN 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7617.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7R9XTR3_9VIRI4.990e-646.94Hypothetical protein (Fragment) n=2 Tax=Prasinoder... [more]
A0A5J4Z1C8_PORPP7.130e-642.55Nbl1_Borealin_N domain-containing protein n=1 Tax=... [more]
A0A5A8DJZ9_CAFRO5.170e-546.94Nbl1_Borealin_N domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7617contigP-wetherbeei_contig7617:2888..3034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.4878104-CDS-P-wetherbeei_contig7617:2887..30341683186991.4878104-CDS-P-wetherbeei_contig7617:2887..3034Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7617 2888..3034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7617.1.1prot_P-wetherbeei_contig7617.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7617 2888..3034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7617.1.1

>prot_P-wetherbeei_contig7617.1.1 ID=prot_P-wetherbeei_contig7617.1.1|Name=mRNA_P-wetherbeei_contig7617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
VDARCRAVLAEAENCKLALRNKLRLEMLRLPKRVRAMPLREFCEEFGEN
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mRNA from alignment at P-wetherbeei_contig7617:2888..3034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7617.1.1 ID=mRNA_P-wetherbeei_contig7617.1.1|Name=mRNA_P-wetherbeei_contig7617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig7617:2888..3034- (Phaeothamnion wetherbeei SAG_119_79)
GTTGATGCACGATGCCGGGCGGTCCTCGCCGAGGCTGAAAACTGCAAGTT
GGCCCTCCGCAACAAGCTGCGGCTCGAAATGCTGCGCCTGCCGAAGCGCG
TGCGGGCGATGCCGCTGCGCGAATTTTGCGAAGAGTTCGGCGAGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7617:2888..3034-

>mRNA_P-wetherbeei_contig7617.1.1 ID=mRNA_P-wetherbeei_contig7617.1.1|Name=mRNA_P-wetherbeei_contig7617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig7617:2888..3034- (Phaeothamnion wetherbeei SAG_119_79)
GTTGATGCACGATGCCGGGCGGTCCTCGCCGAGGCTGAAAACTGCAAGTT
GGCCCTCCGCAACAAGCTGCGGCTCGAAATGCTGCGCCTGCCGAAGCGCG
TGCGGGCGATGCCGCTGCGCGAATTTTGCGAAGAGTTCGGCGAGAAC
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