mRNA_P-wetherbeei_contig7612.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7612.2.1
Unique NamemRNA_P-wetherbeei_contig7612.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A836CKB8_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.850e-42
Identity = 98/243 (40.33%), Postives = 135/243 (55.56%), Query Frame = 1
Query:    1 EERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGSAADAERLLGSLRCTKGRV--------LPRPLIKLIVSIYGPEE 705
            +E L G++VERKTA DL +S++DGR+ EQK R+   G+GRV+YLVEG + H + L+PA LR+A+A T+   G  V  TAN+TESVA L+RVH +IAA L  A  C G      G G                     VR  M+  +Y+ +C K +D   R +FG QLRQ++ CSA R  A+L  +PTPL  M  + AAG   ++ER L  L   KG          L +PL   +  +Y  ++
Sbjct:   66 QEVLLGYIVERKTASDLGSSMVDGRFHEQKHRMARHGLGRVIYLVEGPITHTTRLTPAHLRTAMAHTQAQDGMTVLWTANVTESVAHLQRVHRHIAASLEAA--CRGITASAPGTG---------------------VRPIMSMDQYRAQCGKGKDGDVRYVFGCQLRQVYGCSAARAAAILNEYPTPLDFMLAMEAAG---ESERCLELLAGIKGEPGARMAEAKLTKPLQAALCKLYADDD 282          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A7S3XK47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK47_HETAK)

HSP 1 Score: 142 bits (359), Expect = 7.900e-38
Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 1
Query:   16 GFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAG 582
            GFVVERKTA+DLA SI+DGRY+EQK RL+ SG+ +V YLVEG L  Q +L   +LR+A+AST +  GF+VQR AN+ ESV +L R HH +A  L  A   + S   L               ++ +     AV   MTYR Y ++C K +    + IFG QL+Q    S G++QA+L+RFPTP  LM G
Sbjct:   72 GFVVERKTAEDLAKSIIDGRYAEQKVRLKKSGLSKVTYLVEGSLSGQDVLPTKSLRTAMASTLIQHGFSVQRCANLDESVRWLARTHHQVARQLGYAVAAAQSGDPL---------------DSFK-----AVLPVMTYRHYHDQCGKLKAQKVQDIFGMQLKQFPGMSVGKIQAILERFPTPQRLMDG 240          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.180e-37
Identity = 103/245 (42.04%), Postives = 141/245 (57.55%), Query Frame = 1
Query:    4 ERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASA-RGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGS----AAD-------AERLLGSLRCTKG---RVLPRPLIKLIVSIY 693
            E L G++VERKTA DLA+SI+DGRY EQKRRL+LSG+ R +YLVEG L HQ  L+PAALR+AL S++   G AV +   + ++V FL R H +IA++L     C   + GL  V          GG A+       +R  MTY EY + C K   ++  R + GA +RQ   CSA R +A+++ F +PL LM  L  A S    A D       A+ LLG L C+ G     LP+PL +L+  ++
Sbjct:  298 EVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDGLRDTVNFLARTHRHIASLLE--LSCR-REAGLSPV---RGSRECSGGRAM-------LRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIAGDDAARMKRADALLGGLVCSGGAGTNKLPQPLRRLLCRLF 529          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A2R5FYX3_9STRA (Crossover junction endonuclease MUS81 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYX3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.870e-26
Identity = 75/194 (38.66%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    1 EERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNI--AAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLM 576
            EE +  +++ERK   DL  SI DGRYSEQK RLQ  G+ RV+YLVEG   HQSIL P ALR+A+A T+V  GF V    N+ E+V +L R+H  I  + V T     SG                             A      Y  +     K +  S   IFGAQL+Q+   S  R  A+L+++PTP SL+
Sbjct:  354 EEYVLDYIIERKEVSDLGTSIKDGRYSEQKYRLQRCGLSRVIYLVEGEPSHQSILKPQALRTAMAETQVRDGFTVMHVLNVMETVEYLSRMHRLIESSTVATSQNKWSGP----------------------------ARDSWRRYENFHAANVKGKLRSVNEIFGAQLKQIKGFSGMRAAAILEKYPTPRSLL 519          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A6J2TU23_DROLE (crossover junction endonuclease MUS81 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2TU23_DROLE)

HSP 1 Score: 94.0 bits (232), Expect = 1.370e-18
Identity = 74/224 (33.04%), Postives = 110/224 (49.11%), Query Frame = 1
Query:    4 ERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLCHQSILSPA-ALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMT-YREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGSAADAERLLGSLRCTKGRVLPRPL 669
            E +  ++VERK   DLA+SI DGR+ EQK RL+  GI  V+YL+E    +Q +  P  +L  AL +T + CGF V RT N   S+++L  V   +  +L  A      D                   ++        R+G+  +R   E   +N   + R +F  QL Q+H+ S  R  A+++R+PTP  L+   A   +AA+  RLL S+ C     L RPL
Sbjct:  207 ELVLPYIVERKRMDDLASSIRDGRFHEQKHRLRQCGIPHVIYLIEDYGDNQHVGLPLDSLEQALVNTRIHCGFHVVRTDNHYRSMSYLAGVTRTLV-LLYGAKFLHSVDK-----------------QSLHPICPSDARVGLLKFRALYEDSARNAQLTVREVFVQQLLQIHSLSLERALAIVERYPTPRLLLDAYAVCETAAEGRRLLASIPCGP---LQRPL 409          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A7R9UCP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.140e-18
Identity = 68/186 (36.56%), Postives = 93/186 (50.00%), Query Frame = 1
Query:    4 ERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPT 561
            E +  F++ERK+A DLA SI+DGRY+EQK RL+ SGIG V YLVEG    Q  L   ALR+A+A T V  GF V  T N+ +S   LRR+H  I +++      +G +  L                     V  A+   +T   +Q    K+R  +A  IF   L Q+   S    Q  ++ FPT
Sbjct:  483 EYVLDFIIERKSAADLAESIIDGRYAEQKSRLRASGIGHVTYLVEGAASSQERLPKQALRTAMAETRVLPGFRVLHTNNIAQSAEELRRMHEQIKSLMR-----AGGEDAL-----------------ALFLVDEAMGTFVTLPAFQSESRKHRAFAAGEIFARMLCQVPKFSHVTSQGFVEHFPT 646          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: UPI0007E7B1B1 (crossover junction endonuclease MUS81 n=1 Tax=Drosophila eugracilis TaxID=29029 RepID=UPI0007E7B1B1)

HSP 1 Score: 91.7 bits (226), Expect = 9.040e-18
Identity = 73/235 (31.06%), Postives = 110/235 (46.81%), Query Frame = 1
Query:    4 ERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLCHQSILSPA-ALRSALASTEVACGFAVQRTANMTESVAFLRRVH------------HNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGSAADAERLLGSLRCTKGRVLPRPL 669
            E +  +++ERK   DLA+SI DGR+ EQK RLQ SG+ +++YLVE    ++ +  P  +L+ ALA+ +V  G  V RT N   S+++L  +             H++     D + C  +D  LG                            + +R   E   KN   + R +F  QL QLH+ S  R  A+++R+PTP  L+          +A  LLGS+RC     L RPL
Sbjct:  205 ELVLPYIIERKRMDDLASSIRDGRFHEQKHRLQQSGLKKIIYLVEDYGDNEQLGLPLESLQQALANAKVQSGVQVVRTENHYRSMSYLAGMSRSLDQIFSSKRLHSVDREALDKSCCLLTDSKLGL---------------------------LKFRALYEDSAKNAQLTVREVFVQQLLQLHSLSLERAMAIVERYPTPRCLLEAYENCAEPKEARLLLGSIRCGP---LERPL 409          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A2B4RLV5_STYPI (Crossover junction endonuclease MUS81 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RLV5_STYPI)

HSP 1 Score: 92.0 bits (227), Expect = 1.060e-17
Identity = 74/233 (31.76%), Postives = 111/233 (47.64%), Query Frame = 1
Query:    4 ERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVE--GRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGSAADAERLLGSLRCTKG-RVLPRPLIKLIVSIY 693
            E +  ++VERK   DL  SI+DGR+ EQK RL+  G+   +YLVE  G + H S L    L  A+ +T+V  GF V+RT ++ E VA+L  +   +     + T  S   GGL               N + +         M + ++ +   KN+  +   +F  QL QL   S  +  A+L ++PTP SL+       S  D E LL  L+C +  R L   L KLI  ++
Sbjct:  378 ELILDYIVERKRMDDLCGSIIDGRFHEQKFRLRHCGLRHPIYLVEDFGSIQHMS-LPENTLLQAIVNTQVVDGFFVKRTRDLKEGVAYLTVMTRYLQKFYANKTLVSCHQGGLEQARLNNEKER----NKMYL---------MNFLDFNDSTAKNKVMTVSEVFAKQLMQLSGVSPDKAVAILDKYPTPKSLLDAYKVQKSVEDQELLLSELKCGENQRTLGSSLSKLIYQLF 596          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A3M6U4C9_POCDA (ERCC4 domain-containing protein (Fragment) n=3 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U4C9_POCDA)

HSP 1 Score: 90.9 bits (224), Expect = 2.620e-17
Identity = 70/221 (31.67%), Postives = 105/221 (47.51%), Query Frame = 1
Query:    4 ERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVE--GRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDATDCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGSAADAERLLGSLRCTKGRVLP 660
            E +  ++VERK   DL  SI+DGR+ EQK RL+  G+   +YLVE  G + H S L  + L  A+ +T+V  GF V+RT ++ ESVA+L  +   +    T+ T  S    GL                 +     G     M +  + +   KN+  +   +F  QL QL   S  +  A+L ++PTP SL+       S  D E LL  L+C + +  P
Sbjct:  359 ELILDYIVERKRMDDLCGSIIDGRFHEQKFRLRHCGLRHPIYLVEDFGSIQHMS-LPESTLLQAIVNTQVVDGFFVKRTRDLKESVAYLTVMTRYLQKFCTNKTLVSCHQAGLEEA-------------RLNNDKEGTKMYLMNFPVFNDSTVKNKVMTVSEVFAKQLMQLSGVSPDKAAAILDKYPTPRSLLNAYKVQKSVEDKELLLSVLKCGENQSSP 565          
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Match: A0A1S3HIJ9_LINUN (crossover junction endonuclease MUS81 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HIJ9_LINUN)

HSP 1 Score: 90.9 bits (224), Expect = 2.930e-17
Identity = 70/235 (29.79%), Postives = 118/235 (50.21%), Query Frame = 1
Query:    4 ERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVE--GRLCHQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLTDAT--DCSGSDGGLGGVGTXXXXXXXXGGNAIRMAVGGAVRLGMTYREYQERCCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGSAADAERLLGSLRC-TKGRVLPRPLIKLIVSIY 693
            E +  +++ERK   DLA SI+DGR+ EQK RL+  G+ + +YLVE  G   H S+     L  A+ +T+V  GF V+RT ++ ESVA+L  +   + ++  +     CS ++                GG ++   +  +V++ MTY E+ +   K++  + + +FG  L QLH  S  +  ++   FPT   L+    +  S  + E LL  L+  +  R L   L K +  +Y
Sbjct:  577 ELVLDYIIERKRMDDLAGSIIDGRFKEQKFRLKNCGLRKPIYLVEDYGSTQHFSVKEDT-LNQAIVNTQVIDGFYVKRTKDLKESVAYLTIMTRYLQSIYKNKCLHACSKNE------------LDENGGESV---IDSSVQMLMTYEEFSQYSIKSKALTVKEVFGKMLMQLHGMSGEKALSITDHFPTLSHLVQKYESCASEKEKETLLAKLKFGSMNRNLGAALSKTVYQLY 795          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7612.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKB8_9STRA4.850e-4240.33Restriction endonuclease type II-like protein n=1 ... [more]
A0A7S3XK47_HETAK7.900e-3846.03Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6H5L7R8_9PHAE3.180e-3742.04ERCC4 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A2R5FYX3_9STRA8.870e-2638.66Crossover junction endonuclease MUS81 n=1 Tax=Hond... [more]
A0A6J2TU23_DROLE1.370e-1833.04crossover junction endonuclease MUS81 n=1 Tax=Dros... [more]
A0A7R9UCP7_9STRA6.140e-1836.56Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
UPI0007E7B1B19.040e-1831.06crossover junction endonuclease MUS81 n=1 Tax=Dros... [more]
A0A2B4RLV5_STYPI1.060e-1731.76Crossover junction endonuclease MUS81 n=3 Tax=Styl... [more]
A0A3M6U4C9_POCDA2.620e-1731.67ERCC4 domain-containing protein (Fragment) n=3 Tax... [more]
A0A1S3HIJ9_LINUN2.930e-1729.79crossover junction endonuclease MUS81 isoform X1 n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7612contigP-wetherbeei_contig7612:1648..2367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQM7
Preferred nameMus81
PFAMsERCC4
Model size720
Max annot lvl2759|Eukaryota
KEGG koko:K08991
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000793,GO:0000794,GO:0002164,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007095,GO:0007127,GO:0007129,GO:0007131,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0031297,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0040019,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045132,GO:0045143,GO:0045786,GO:0045930,GO:0045995,GO:0046483,GO:0048256,GO:0048257,GO:0048285,GO:0048476,GO:0048518,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051026,GO:0051094,GO:0051239,GO:0051240,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:2000026
Exons1
Evalue4.2e-39
EggNOG OGsCOG1948@1|root,KOG2379@2759|Eukaryota
Description3'-flap endonuclease activity
Cds size720
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.268449-CDS-P-wetherbeei_contig7612:1647..23671683186991.268449-CDS-P-wetherbeei_contig7612:1647..2367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7612 1648..2367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7612.2.1prot_P-wetherbeei_contig7612.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7612 1648..2367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7612.2.1

>prot_P-wetherbeei_contig7612.2.1 ID=prot_P-wetherbeei_contig7612.2.1|Name=mRNA_P-wetherbeei_contig7612.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
EERLAGFVVERKTAKDLAASIMDGRYSEQKRRLQLSGIGRVVYLVEGRLC
HQSILSPAALRSALASTEVACGFAVQRTANMTESVAFLRRVHHNIAAVLT
DATDCSGSDGGLGGVGTGGAAGIGGGGNAIRMAVGGAVRLGMTYREYQER
CCKNRDASARGIFGAQLRQLHNCSAGRVQAVLQRFPTPLSLMAGLAAAGS
AADAERLLGSLRCTKGRVLPRPLIKLIVSIYGPEEDGGAA
back to top

mRNA from alignment at P-wetherbeei_contig7612:1648..2367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7612.2.1 ID=mRNA_P-wetherbeei_contig7612.2.1|Name=mRNA_P-wetherbeei_contig7612.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig7612:1648..2367- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCGGCTGGCCGGCTTCGTGGTGGAGCGCAAGACGGCCAAGGACCT GGCGGCGTCCATCATGGACGGCCGTTACTCGGAGCAGAAGCGGCGGCTGC AGCTGTCGGGCATCGGCCGGGTCGTCTACCTCGTGGAAGGGCGCCTCTGC CACCAGAGCATCCTCAGCCCTGCGGCACTGCGGTCGGCGCTGGCGAGCAC CGAGGTCGCCTGCGGCTTCGCGGTGCAGCGGACCGCCAACATGACCGAGT CGGTGGCGTTCCTGCGCCGCGTCCACCACAACATTGCCGCCGTGCTGACT GATGCTACAGACTGCAGTGGCAGCGACGGCGGGCTCGGTGGCGTGGGCAC AGGCGGCGCGGCAGGCATTGGCGGCGGCGGTAACGCTATCCGCATGGCGG TGGGCGGCGCGGTGCGCCTGGGCATGACGTACCGCGAGTACCAGGAGCGC TGCTGCAAGAACCGTGACGCCTCAGCGCGCGGCATTTTTGGGGCGCAGCT GCGGCAGCTGCACAACTGCAGCGCCGGCCGCGTCCAGGCGGTGCTGCAGC GGTTTCCGACGCCGCTCAGCCTCATGGCGGGGCTTGCGGCGGCGGGCTCC GCGGCCGACGCCGAGCGGCTGCTGGGATCACTGCGGTGCACCAAGGGCAG GGTGCTGCCGCGGCCGCTCATCAAGCTCATCGTGAGCATTTACGGCCCCG AGGAGGACGGCGGAGCGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7612:1648..2367-

>mRNA_P-wetherbeei_contig7612.2.1 ID=mRNA_P-wetherbeei_contig7612.2.1|Name=mRNA_P-wetherbeei_contig7612.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig7612:1648..2367- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCGGCTGGCCGGCTTCGTGGTGGAGCGCAAGACGGCCAAGGACCT
GGCGGCGTCCATCATGGACGGCCGTTACTCGGAGCAGAAGCGGCGGCTGC
AGCTGTCGGGCATCGGCCGGGTCGTCTACCTCGTGGAAGGGCGCCTCTGC
CACCAGAGCATCCTCAGCCCTGCGGCACTGCGGTCGGCGCTGGCGAGCAC
CGAGGTCGCCTGCGGCTTCGCGGTGCAGCGGACCGCCAACATGACCGAGT
CGGTGGCGTTCCTGCGCCGCGTCCACCACAACATTGCCGCCGTGCTGACT
GATGCTACAGACTGCAGTGGCAGCGACGGCGGGCTCGGTGGCGTGGGCAC
AGGCGGCGCGGCAGGCATTGGCGGCGGCGGTAACGCTATCCGCATGGCGG
TGGGCGGCGCGGTGCGCCTGGGCATGACGTACCGCGAGTACCAGGAGCGC
TGCTGCAAGAACCGTGACGCCTCAGCGCGCGGCATTTTTGGGGCGCAGCT
GCGGCAGCTGCACAACTGCAGCGCCGGCCGCGTCCAGGCGGTGCTGCAGC
GGTTTCCGACGCCGCTCAGCCTCATGGCGGGGCTTGCGGCGGCGGGCTCC
GCGGCCGACGCCGAGCGGCTGCTGGGATCACTGCGGTGCACCAAGGGCAG
GGTGCTGCCGCGGCCGCTCATCAAGCTCATCGTGAGCATTTACGGCCCCG
AGGAGGACGGCGGAGCGGCG
back to top