mRNA_P-wetherbeei_contig76.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig76.9.1
Unique NamemRNA_P-wetherbeei_contig76.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig76.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig76contigP-wetherbeei_contig76:7193..8285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size816
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004190.1
Cds size816
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.5035818-CDS-P-wetherbeei_contig76:7192..73061683186990.5035818-CDS-P-wetherbeei_contig76:7192..7306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 7193..7306 -
1683186990.5147278-CDS-P-wetherbeei_contig76:7467..77811683186990.5147278-CDS-P-wetherbeei_contig76:7467..7781Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 7468..7781 -
1683186990.5248594-CDS-P-wetherbeei_contig76:7897..82851683186990.5248594-CDS-P-wetherbeei_contig76:7897..8285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 7898..8285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig76.9.1prot_P-wetherbeei_contig76.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig76 7193..8285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig76.9.1

>prot_P-wetherbeei_contig76.9.1 ID=prot_P-wetherbeei_contig76.9.1|Name=mRNA_P-wetherbeei_contig76.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=272bp
ALAGRSWADSDSEVEETPAAAKVKNAQSTPWSDSDDEEDEEEGEEEDEEG
EHAADENGGDAGDAGDRETTSKMGNGAGAAESANGAADAAAQAAAREAAL
KNMSKKERKALKEKELADLDALLADFGVDATEEQKDGEEGPSEGTLAAEA
EEVKAEGAGAVEDAKKKKKKRREKDKGAAAQAATAAEGKEVGGEAKVAAA
AAGTGEEAEEGAATPAAAAMASLKAKVRLPLSDAAENVALVAAAKEAAAA
AKKKKDVKKKDKKNYNQTPQR*
back to top

mRNA from alignment at P-wetherbeei_contig76:7193..8285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig76.9.1 ID=mRNA_P-wetherbeei_contig76.9.1|Name=mRNA_P-wetherbeei_contig76.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1093bp|location=Sequence derived from alignment at P-wetherbeei_contig76:7193..8285- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTAGCCGGCAGGAGCTGGGCGGACAGCGACAGCGAGGTGGAAGAAAC
GCCGGCGGCCGCCAAGGTGAAAAACGCCCAATCCACTCCATGGAGTGACA
GCGACGACGAGGAGGACGAAGAAGAGGGAGAGGAGGAGGATGAGGAGGGC
GAGCACGCGGCGGACGAGAACGGAGGCGACGCCGGCGACGCCGGCGACCG
AGAAACCACGTCGAAGATGGGTAATGGCGCAGGAGCAGCAGAGTCTGCAA
ACGGGGCAGCGGATGCAGCCGCACAAGCGGCGGCGCGGGAGGCGGCGTTG
AAGAATATGTCCAAGAAGGAGCGCAAGGCACTGAAGGAGAAAGAGCTGGC
GGATTTGGATGCGCTGCTGGCCGACTTCGGCGTTGACGGTAAAGTCACAC
CAAACCTTGTTTTCTCTCGCGACTTGCCCTCTTTCAAACAGCCTTTGAGA
GATCGCAGGCGCTTATGAAATGTTCTTTTCGCTGCCGCTTCGCTTTTCTT
GCAGCCACGGAGGAGCAGAAGGATGGGGAGGAGGGGCCGTCAGAGGGAAC
GTTGGCCGCTGAGGCGGAAGAGGTGAAGGCCGAAGGCGCTGGAGCAGTGG
AGGACGCCAAGAAGAAGAAGAAGAAAAGGCGGGAGAAGGACAAGGGCGCC
GCCGCGCAGGCCGCTACCGCCGCGGAGGGGAAGGAGGTGGGCGGGGAAGC
GAAGGTGGCGGCTGCTGCCGCTGGCACGGGCGAGGAGGCGGAGGAGGGCG
CAGCAACACCAGCCGCGGCGGCGATGGCCAGCCTCAAGGCCAAGGTGCGT
CTGCCTCTTTCAGATGCGGTCTTTTAAGATGTGTCCCTTCCTTTTTCCGG
TACTGTTTGCTATTCGGCATTTTGTCGCTGATGACTGTGATGAAAGGAGT
GATGATTCAATCTTCAATCACTTCTTTTGAGTTCTCCCCGGCTTCTCTCG
TCATCCGGCAGGCGGCGGCGAAGAAGAAGGCGGAGAACGTGGCCCTCGTG
GCCGCTGCCAAAGAGGCGGCAGCTGCAGCCAAGAAAAAGAAGGACGTAAA
GAAGAAAGACAAGAAGAATTACAACCAAACGCCGCAGCGATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig76:7193..8285-

>mRNA_P-wetherbeei_contig76.9.1 ID=mRNA_P-wetherbeei_contig76.9.1|Name=mRNA_P-wetherbeei_contig76.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig76:7193..8285- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTAGCCGGCAGGAGCTGGGCGGACAGCGACAGCGAGGTGGAAGAAAC
GCCGGCGGCCGCCAAGGTGAAAAACGCCCAATCCACTCCATGGAGTGACA
GCGACGACGAGGAGGACGAAGAAGAGGGAGAGGAGGAGGATGAGGAGGGC
GAGCACGCGGCGGACGAGAACGGAGGCGACGCCGGCGACGCCGGCGACCG
AGAAACCACGTCGAAGATGGGTAATGGCGCAGGAGCAGCAGAGTCTGCAA
ACGGGGCAGCGGATGCAGCCGCACAAGCGGCGGCGCGGGAGGCGGCGTTG
AAGAATATGTCCAAGAAGGAGCGCAAGGCACTGAAGGAGAAAGAGCTGGC
GGATTTGGATGCGCTGCTGGCCGACTTCGGCGTTGACGCCACGGAGGAGC
AGAAGGATGGGGAGGAGGGGCCGTCAGAGGGAACGTTGGCCGCTGAGGCG
GAAGAGGTGAAGGCCGAAGGCGCTGGAGCAGTGGAGGACGCCAAGAAGAA
GAAGAAGAAAAGGCGGGAGAAGGACAAGGGCGCCGCCGCGCAGGCCGCTA
CCGCCGCGGAGGGGAAGGAGGTGGGCGGGGAAGCGAAGGTGGCGGCTGCT
GCCGCTGGCACGGGCGAGGAGGCGGAGGAGGGCGCAGCAACACCAGCCGC
GGCGGCGATGGCCAGCCTCAAGGCCAAGGTGCGTCTGCCTCTTTCAGATG
CGGCGGAGAACGTGGCCCTCGTGGCCGCTGCCAAAGAGGCGGCAGCTGCA
GCCAAGAAAAAGAAGGACGTAAAGAAGAAAGACAAGAAGAATTACAACCA
AACGCCGCAGCGATGA
back to top