mRNA_P-wetherbeei_contig76.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig76.5.1
Unique NamemRNA_P-wetherbeei_contig76.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig76.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig76contigP-wetherbeei_contig76:4241..5676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1324
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_011810.1
Cds size1152
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.3820996-CDS-P-wetherbeei_contig76:4240..52411683186990.3820996-CDS-P-wetherbeei_contig76:4240..5241Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 4241..5241 -
1683186990.3926928-CDS-P-wetherbeei_contig76:5354..55051683186990.3926928-CDS-P-wetherbeei_contig76:5354..5505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 5355..5505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.403589-UTR-P-wetherbeei_contig76:5505..56761683186990.403589-UTR-P-wetherbeei_contig76:5505..5676Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig76 5506..5676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig76.5.1prot_P-wetherbeei_contig76.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig76 4241..5505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig76.5.1

>prot_P-wetherbeei_contig76.5.1 ID=prot_P-wetherbeei_contig76.5.1|Name=mRNA_P-wetherbeei_contig76.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=384bp
MPRYPEYVLKTGIQGIVRGFFMRLLCTDGPLDAQPHHTLIRIFTARGISN
ALWKGHSMDNEFVDGLLHDAPNDKDPDALVSKAKANLELWGLVHILRVVD
IDAVAKLRHIIDALAAELRHPPPEAAREKELTIWTTLACPAVLAGVLLPQ
LSYELPSAVSLAMHVQISCEHFETAASLFTAIVLGDVRAAGKSRSAVPLR
VTLEVPSAYGGGGSGGAAQGGGRGLRRTWGPRELEENSESFVGEVKAAVP
QLGEVTFELLFAAPCDGGGGGGGSGNRGGVNGVSDGGGGAGIDDDAPPKT
VVRVRRTYVLHYRSDRGVRSFERPFRALAEGIFLDRAAAEQYAQLQRDQG
KTFEGDGMPAARAALARVAARARAEGRDYDAYCG
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mRNA from alignment at P-wetherbeei_contig76:4241..5676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig76.5.1 ID=mRNA_P-wetherbeei_contig76.5.1|Name=mRNA_P-wetherbeei_contig76.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1436bp|location=Sequence derived from alignment at P-wetherbeei_contig76:4241..5676- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGTGCTTCACAGTTTGGGTTCTGAAGCAAAGGGTTTTCTTGGGCAG
GAGAGGTGTTCGAGCTGTTGGGAATGTGTAACGGGAGGATTCACAAAGCT
CCAGCTAGGGCACTTTTCCTCCTCTGTTCTCTAGCCATGTAGCAGCTCTG
CTGAGAGACCAGACCAGCGAAATGCCTCGTTATCCGGAGTACGTGCTCAA
GACAGGCATCCAAGGCATCGTCCGCGGTTTCTTCATGCGGTTGCTCTGCA
CAGACGGGCCGTTGGACGCTCAGCCTCATCACACGCTAATCAGGATCTTT
ACCGCGCGCGGCATCTCTAACGGTGAGGCCCTTTCGAACGCAACTTTCCC
AAAGCATCCAGAAGTGACTCGACAACAACTGCCACAATATCTTCGCTTCC
TCCTCCCTTCTTGGCAAACCCACAACATACTGCAGCACTATGGAAGGGTC
ATAGCATGGACAATGAGTTTGTCGATGGCTTGCTCCACGACGCTCCCAAC
GACAAAGACCCAGACGCGCTCGTGTCCAAGGCAAAAGCCAACCTCGAACT
GTGGGGCCTCGTCCACATCCTCCGCGTCGTCGACATCGACGCGGTGGCAA
AATTGCGGCATATCATCGACGCGCTGGCCGCCGAGCTGCGCCACCCGCCT
CCGGAGGCCGCCCGTGAGAAGGAGCTGACCATCTGGACGACGCTCGCCTG
CCCGGCCGTCCTGGCTGGCGTCCTGCTGCCGCAGCTCTCCTACGAGCTGC
CGTCCGCCGTTTCTCTCGCCATGCACGTCCAGATTAGCTGCGAGCACTTC
GAAACGGCCGCCAGCCTCTTCACCGCCATTGTCCTCGGCGACGTCCGCGC
CGCCGGCAAGAGCCGCTCGGCCGTTCCGCTGCGCGTAACGCTCGAGGTTC
CTTCGGCCTACGGCGGCGGCGGGTCTGGCGGCGCGGCGCAGGGCGGCGGA
AGGGGCCTACGCCGCACGTGGGGGCCTCGGGAGCTGGAGGAGAACTCGGA
GAGCTTTGTCGGGGAGGTAAAGGCAGCCGTGCCGCAGCTGGGCGAGGTTA
CCTTCGAGCTGCTCTTCGCGGCACCGTGCGACGGCGGCGGTGGCGGCGGT
GGTAGTGGTAATAGGGGCGGCGTCAATGGCGTTAGTGATGGTGGCGGCGG
CGCTGGTATTGACGACGATGCTCCTCCAAAGACGGTGGTTCGGGTAAGGC
GGACATACGTGCTCCATTACCGGAGCGACCGCGGGGTGCGCTCCTTCGAG
CGCCCATTCCGCGCCCTGGCCGAAGGCATCTTCCTGGACAGGGCTGCTGC
AGAACAGTATGCACAACTCCAGAGGGACCAGGGAAAGACCTTTGAGGGCG
ACGGCATGCCGGCGGCGCGCGCCGCGCTCGCCCGCGTTGCCGCACGGGCC
CGCGCCGAGGGCCGCGACTACGATGCATACTGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig76:4241..5676-

>mRNA_P-wetherbeei_contig76.5.1 ID=mRNA_P-wetherbeei_contig76.5.1|Name=mRNA_P-wetherbeei_contig76.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1152bp|location=Sequence derived from alignment at P-wetherbeei_contig76:4241..5676- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCGTTATCCGGAGTACGTGCTCAAGACAGGCATCCAAGGCATCGT
CCGCGGTTTCTTCATGCGGTTGCTCTGCACAGACGGGCCGTTGGACGCTC
AGCCTCATCACACGCTAATCAGGATCTTTACCGCGCGCGGCATCTCTAAC
GCACTATGGAAGGGTCATAGCATGGACAATGAGTTTGTCGATGGCTTGCT
CCACGACGCTCCCAACGACAAAGACCCAGACGCGCTCGTGTCCAAGGCAA
AAGCCAACCTCGAACTGTGGGGCCTCGTCCACATCCTCCGCGTCGTCGAC
ATCGACGCGGTGGCAAAATTGCGGCATATCATCGACGCGCTGGCCGCCGA
GCTGCGCCACCCGCCTCCGGAGGCCGCCCGTGAGAAGGAGCTGACCATCT
GGACGACGCTCGCCTGCCCGGCCGTCCTGGCTGGCGTCCTGCTGCCGCAG
CTCTCCTACGAGCTGCCGTCCGCCGTTTCTCTCGCCATGCACGTCCAGAT
TAGCTGCGAGCACTTCGAAACGGCCGCCAGCCTCTTCACCGCCATTGTCC
TCGGCGACGTCCGCGCCGCCGGCAAGAGCCGCTCGGCCGTTCCGCTGCGC
GTAACGCTCGAGGTTCCTTCGGCCTACGGCGGCGGCGGGTCTGGCGGCGC
GGCGCAGGGCGGCGGAAGGGGCCTACGCCGCACGTGGGGGCCTCGGGAGC
TGGAGGAGAACTCGGAGAGCTTTGTCGGGGAGGTAAAGGCAGCCGTGCCG
CAGCTGGGCGAGGTTACCTTCGAGCTGCTCTTCGCGGCACCGTGCGACGG
CGGCGGTGGCGGCGGTGGTAGTGGTAATAGGGGCGGCGTCAATGGCGTTA
GTGATGGTGGCGGCGGCGCTGGTATTGACGACGATGCTCCTCCAAAGACG
GTGGTTCGGGTAAGGCGGACATACGTGCTCCATTACCGGAGCGACCGCGG
GGTGCGCTCCTTCGAGCGCCCATTCCGCGCCCTGGCCGAAGGCATCTTCC
TGGACAGGGCTGCTGCAGAACAGTATGCACAACTCCAGAGGGACCAGGGA
AAGACCTTTGAGGGCGACGGCATGCCGGCGGCGCGCGCCGCGCTCGCCCG
CGTTGCCGCACGGGCCCGCGCCGAGGGCCGCGACTACGATGCATACTGCG
GG
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