mRNA_P-wetherbeei_contig76.11.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig76.11.1
Unique NamemRNA_P-wetherbeei_contig76.11.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A067CS54_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CS54_SAPPC)

HSP 1 Score: 83.6 bits (205), Expect = 3.790e-19
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2 
Query:   23 GKEDPAELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEKEP 205
            G +D  ELTVFVQ++LEQMQSRFA+MS+AIIGR+DEMG RID+LEKSI  LMEQ+  E +P
Sbjct:   13 GAQDSQELTVFVQSLLEQMQSRFAQMSEAIIGRIDEMGSRIDDLEKSIGELMEQSSTEGKP 73
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A024USC6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USC6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.060e-18
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 2 
Query:   23 GKEDPAELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEKEPGDQAEASAAP 235
            G++D  ELTVFVQ++LEQMQSRFA+MS+AIIGR+DEMG RID+LEKSI  L+EQT       D A A+  P
Sbjct:   14 GQQDSQELTVFVQSLLEQMQSRFAQMSEAIIGRIDEMGSRIDDLEKSIGELLEQTNA----SDAAVAAQKP 80
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A7S2ERV2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERV2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-16
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 2 
Query:   23 GKEDPAELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEKEP 205
            G  DP +L+VFV+ +LEQMQ RF+ M D+IIGR+DEMGDRI++LEKS+  LME+ GV+  P
Sbjct:   36 GSSDPQDLSVFVEDLLEQMQKRFSHMGDSIIGRIDEMGDRIEDLEKSVSDLMERAGVDPPP 96
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: F0WJR0_9STRA (Predicted protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJR0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.560e-16
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:   41 ELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVE 196
            +LTVFVQT+LEQMQ+RF++MSDAIIGR+D+MG RIDELEKSI  LM+QT  E
Sbjct:   22 DLTVFVQTLLEQMQNRFSQMSDAIIGRIDDMGTRIDELEKSIGDLMDQTNDE 73
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A7S0IS76_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IS76_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 7.770e-16
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 2 
Query:    2 DPGKRPEGKEDPAELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEKEPGDQAEASAAPGRA 244
            D G  P+  +D   LTVFVQT+L+QMQSRFA MSDAIIGR+DEMG R    E SI  LM Q G+E+EP +   A     R+
Sbjct:   19 DEGAAPQTTQD---LTVFVQTLLQQMQSRFATMSDAIIGRIDEMGHRXXXXENSIGELMAQAGIEEEPQEGTAAEDGEARS 96
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A1W0A769_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A769_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.370e-15
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:   26 KEDPAELTVFVQTVLEQMQSRFAEMSDAIIGR---------VDEMGDRIDELEKSIQLLMEQTGVEKEPGDQAE 220
            ++D  ELTVFVQ++LEQMQSRFA+MS+AIIGR         +DEMG RID+LEKSI  LMEQ+  E +P    E
Sbjct:   14 QQDSQELTVFVQSLLEQMQSRFAQMSEAIIGRNILFNAVVLLDEMGTRIDDLEKSIGELMEQSATEGKPAAPKE 87
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A2D4BZG6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZG6_PYTIN)

HSP 1 Score: 72.8 bits (177), Expect = 2.140e-14
Identity = 48/98 (48.98%), Postives = 58/98 (59.18%), Query Frame = 2 
Query:    8 GKRPEGKEDPAELTVFVQTVLEQMQSRFAEMSDAIIGR------------------VDEMGDRIDELEKSIQLLMEQTGVEKEPGDQAEASAAPGRAA 247
            G  P    D  +LTVFVQ++LEQMQSRF++MS+AIIGR                  +DEMG RIDELEKSI  LMEQT  +      A+A+AA   AA
Sbjct:   15 GGAPGAPNDGQDLTVFVQSLLEQMQSRFSQMSEAIIGRNILFAFLSHAMHHIDIGSLDEMGARIDELEKSISDLMEQTNEDGAADKTAQAAAAASDAA 112
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A835YY59_9STRA (Heat shock factor-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY59_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.370e-14
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 2 
Query:   41 ELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEKEPG 208
            +L  FVQ VLEQMQ+RF +MSD IIGRVDEMG R+D+LEKSI  LME TGVE   G
Sbjct:   21 DLIEFVQGVLEQMQTRFQQMSDTIIGRVDEMGARLDDLEKSIADLMEATGVEGAAG 76
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A7S2RXN8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RXN8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.030e-14
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:    2 DPGKRPEGKEDPAELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEK-EPGDQAEAS 226
            D G  P  +E   +L++FVQ +L QMQSRF +MS+AI+ R+DEMGDRID LEKSI  LM Q GV+  EPG  + +S
Sbjct:   16 DAGNAPSQEEQ--DLSIFVQNLLTQMQSRFQQMSEAIVTRIDEMGDRIDGLEKSIGDLMNQAGVQSDEPGAASSSS 89
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BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Match: A0A6A5BXW9_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BXW9_NAEFO)

HSP 1 Score: 70.9 bits (172), Expect = 4.190e-14
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 2 
Query:    8 GKRPEGKEDPAELTVFVQTVLEQMQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEKE 202
            G  P+G +   ELTVFVQ +L QMQ RF +MSD II R+DEMG RID+LEKSI  LM+Q G+ +E
Sbjct:    7 GVPPQGTQ---ELTVFVQNLLHQMQKRFQDMSDTIIKRIDEMGTRIDDLEKSIGELMQQAGIPEE 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig76.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CS54_SAPPC3.790e-1970.49Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024USC6_9STRA2.060e-1863.38Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2ERV2_9STRA1.700e-1660.66Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
F0WJR0_9STRA4.560e-1675.00Predicted protein putative n=1 Tax=Albugo laibachi... [more]
A0A7S0IS76_9EUKA7.770e-1654.32Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A1W0A769_9STRA4.370e-1558.11Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A2D4BZG6_PYTIN2.140e-1448.98Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A835YY59_9STRA2.370e-1469.64Heat shock factor-binding protein 1 n=1 Tax=Tribon... [more]
A0A7S2RXN8_9STRA3.030e-1455.26Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6A5BXW9_NAEFO4.190e-1460.00Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig76contigP-wetherbeei_contig76:9004..9616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863059.1
Preferred nameHSBP1
PFAMsHSBP1
Model size304
Max annot lvl2759|Eukaryota
KEGG koko:K19765
KEGG Pathwayko04212,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0001704,GO:0001706,GO:0003006,GO:0003008,GO:0003012,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0005856,GO:0006355,GO:0006357,GO:0006936,GO:0006950,GO:0007275,GO:0007369,GO:0007444,GO:0007492,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010154,GO:0010286,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0019219,GO:0019222,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034605,GO:0035220,GO:0035295,GO:0035987,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043621,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048316,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048598,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0060429,GO:0061458,GO:0065007,GO:0070013,GO:0070370,GO:0080090,GO:0080134,GO:0080135,GO:0140110,GO:1900034,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue3.81e-10
EggNOG OGsKOG4117@1|root,KOG4117@2759|Eukaryota
Ec32 ortholog descriptionHeat shock factor binding 1
Ec32 orthologEc-08_002570.1
Descriptiontranscription corepressor activity
Cds size183
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.554742-UTR-P-wetherbeei_contig76:9003..90481683186990.554742-UTR-P-wetherbeei_contig76:9003..9048Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig76 9004..9048 -
1683186990.6023705-UTR-P-wetherbeei_contig76:9540..96161683186990.6023705-UTR-P-wetherbeei_contig76:9540..9616Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig76 9541..9616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.5680113-CDS-P-wetherbeei_contig76:9048..91231683186990.5680113-CDS-P-wetherbeei_contig76:9048..9123Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 9049..9123 -
1683186990.5788167-CDS-P-wetherbeei_contig76:9310..94151683186990.5788167-CDS-P-wetherbeei_contig76:9310..9415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 9311..9415 -
1683186990.589284-CDS-P-wetherbeei_contig76:9537..95401683186990.589284-CDS-P-wetherbeei_contig76:9537..9540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 9538..9540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig76.11.1prot_P-wetherbeei_contig76.11.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig76 9049..9540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig76.11.1

>prot_P-wetherbeei_contig76.11.1 ID=prot_P-wetherbeei_contig76.11.1|Name=mRNA_P-wetherbeei_contig76.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MQSRFAEMSDAIIGRVDEMGDRIDELEKSIQLLMEQTGVEKEPGDQAEAS
AAPGRAAGNA*
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mRNA from alignment at P-wetherbeei_contig76:9004..9616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig76.11.1 ID=mRNA_P-wetherbeei_contig76.11.1|Name=mRNA_P-wetherbeei_contig76.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=613bp|location=Sequence derived from alignment at P-wetherbeei_contig76:9004..9616- (Phaeothamnion wetherbeei SAG_119_79)
GGACCCAGGAAAGAGACCGGAGGGCAAAGAGGATCCGGCAGAGCTCACAG
TGTTTGTACAGACCGTGCTGGAGCAGATGGTGAGAAATGCACTCCCTTCA
TCAACCTGCAATGTGGACATTGTTTTCCACTGGCCACGCTTCCTCACACT
GTTTTCCACTCGACACCAAAACCGCTGCTATGTCTCTCCCACCGCCAACA
GCAATCTCGCTTCGCGGAGATGTCCGACGCTATCATCGGGAGGGTTGATG
AAATGGGCGACCGCATCGACGAGCTGGAGAAGTCGATACAGTTGCTTATG
GAGCAGGTGAGGCTTTGTGGCTTTTTGGAAGGGGTTTGAACTACAGAGGT
CGACGACAAGGCTTAAGGTTGTCCAAGGTGGACTGCCTAGTGGTCTCCCA
TTTTGTACCATCATTTTTCGGCCACCTGTGACTCTGCAAGCTGACCATTC
TTCTTTTCCTTTGCCCTTTTCACTTTCCTCTCTCCCTTTGCAGACTGGCG
TAGAGAAGGAGCCTGGCGACCAAGCAGAAGCATCGGCAGCACCAGGAAGA
GCCGCAGGAAACGCATGAATCGTCAAAATATTAATTTGCTGTAAATATCA
TCGCTCGTATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig76:9004..9616-

>mRNA_P-wetherbeei_contig76.11.1 ID=mRNA_P-wetherbeei_contig76.11.1|Name=mRNA_P-wetherbeei_contig76.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig76:9004..9616- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAATCTCGCTTCGCGGAGATGTCCGACGCTATCATCGGGAGGGTTGA
TGAAATGGGCGACCGCATCGACGAGCTGGAGAAGTCGATACAGTTGCTTA
TGGAGCAGACTGGCGTAGAGAAGGAGCCTGGCGACCAAGCAGAAGCATCG
GCAGCACCAGGAAGAGCCGCAGGAAACGCATGA
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