mRNA_P-wetherbeei_contig7593.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7593.1.1
Unique NamemRNA_P-wetherbeei_contig7593.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7593.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7593contigP-wetherbeei_contig7593:150..1185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size944
Hectar predicted targeting categoryother localisation
Exons2
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.0682108-UTR-P-wetherbeei_contig7593:149..4741683186990.0682108-UTR-P-wetherbeei_contig7593:149..474Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7593 150..474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.0769894-CDS-P-wetherbeei_contig7593:474..5551683186990.0769894-CDS-P-wetherbeei_contig7593:474..555Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7593 475..555 -
1683186990.085315-CDS-P-wetherbeei_contig7593:648..11851683186990.085315-CDS-P-wetherbeei_contig7593:648..1185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7593 649..1185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7593.1.1prot_P-wetherbeei_contig7593.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7593 475..1185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7593.1.1

>prot_P-wetherbeei_contig7593.1.1 ID=prot_P-wetherbeei_contig7593.1.1|Name=mRNA_P-wetherbeei_contig7593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
DEQAYALARTEKRKDKAPRPHLPPHSLAHKAHNLHRTRSPDRIDGKVSFI
WKPRLCNGWQAGYVKVTRGPGVRIFWTRSIHALPKDTAPVKRRRKKEKRR
RKGGGSSEVEKMRHCSIVERFCFEGLTEIPIPPSVSVAHPYSCELKEQAW
TAFRAAVSWSEAKPRSLCAAEIRAQRRRPAEAIQAGQDVEWAVQAGNAPS
LYAGH*
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mRNA from alignment at P-wetherbeei_contig7593:150..1185-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7593.1.1 ID=mRNA_P-wetherbeei_contig7593.1.1|Name=mRNA_P-wetherbeei_contig7593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1036bp|location=Sequence derived from alignment at P-wetherbeei_contig7593:150..1185- (Phaeothamnion wetherbeei SAG_119_79)
GACGAACAGGCATATGCATTGGCACGCACTGAAAAACGAAAAGATAAAGC
TCCTCGGCCTCATCTCCCTCCTCACTCGCTCGCACACAAAGCGCACAACC
TCCATAGAACGAGGAGCCCAGATAGGATCGATGGAAAAGTTTCTTTTATC
TGGAAGCCGCGTTTGTGCAACGGCTGGCAAGCCGGTTATGTAAAGGTGAC
GCGTGGACCGGGTGTGCGCATCTTTTGGACTCGCTCCATTCATGCGCTGC
CGAAAGATACAGCACCGGTTAAACGGAGGAGAAAGAAGGAAAAAAGGAGG
AGGAAGGGGGGTGGAAGCAGCGAAGTAGAGAAAATGAGGCATTGCAGTAT
TGTGGAGCGTTTCTGCTTCGAAGGCCTAACCGAGATCCCAATTCCTCCTT
CAGTCTCGGTCGCTCACCCTTATTCCTGCGAGCTGAAGGAGCAAGCATGG
ACAGCATTCCGGGCCGCAGTCTCGTGGAGCGAGGCGAAACCGCGAAGCTT
GTGCGCTGCGGAGATCAGAGCGCAGCGAAGGCGGCCGGTGGGTAAAGATT
GCTTGCTTGCGGTAGAGAATATGCGCAATCCCCTTACTCCTTCTCTGTTA
CATCCGCCGTGTTCCGTGCATCTTTTGAAGGCGGAGGCCATCCAGGCTGG
CCAGGATGTCGAATGGGCTGTTCAGGCCGGCAACGCCCCGTCGTTGTACG
CTGGACATTAAAAGCGGCGCGACTACATACACAGCTCCCTCTACCTGATG
GTCATCTTCGAGGGGTCCAATCTGGAGGCAACTTTCTCACCGCATTTTCC
GTGGCCTGGCACGGAGAACGCAAGGCTGGTACAGTTTAATTTTATTTGTT
TCTTCAGGGTCGCATTCTCAAAGCGGATTCGCGCGAGGAAAGGGTGCCTT
CGGTTTTGGTAAAAGTTAACAAGCTCTCCCACCTGATGTTCCGCAAAAAA
GGTGTGATCAGGACGCACTGCCTCGTCGAAATTCACGTGCCGCGTTGGGG
AACTACCTCTGCGAGGCCGTTGCGGCCGCAGCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7593:150..1185-

>mRNA_P-wetherbeei_contig7593.1.1 ID=mRNA_P-wetherbeei_contig7593.1.1|Name=mRNA_P-wetherbeei_contig7593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig7593:150..1185- (Phaeothamnion wetherbeei SAG_119_79)
GACGAACAGGCATATGCATTGGCACGCACTGAAAAACGAAAAGATAAAGC
TCCTCGGCCTCATCTCCCTCCTCACTCGCTCGCACACAAAGCGCACAACC
TCCATAGAACGAGGAGCCCAGATAGGATCGATGGAAAAGTTTCTTTTATC
TGGAAGCCGCGTTTGTGCAACGGCTGGCAAGCCGGTTATGTAAAGGTGAC
GCGTGGACCGGGTGTGCGCATCTTTTGGACTCGCTCCATTCATGCGCTGC
CGAAAGATACAGCACCGGTTAAACGGAGGAGAAAGAAGGAAAAAAGGAGG
AGGAAGGGGGGTGGAAGCAGCGAAGTAGAGAAAATGAGGCATTGCAGTAT
TGTGGAGCGTTTCTGCTTCGAAGGCCTAACCGAGATCCCAATTCCTCCTT
CAGTCTCGGTCGCTCACCCTTATTCCTGCGAGCTGAAGGAGCAAGCATGG
ACAGCATTCCGGGCCGCAGTCTCGTGGAGCGAGGCGAAACCGCGAAGCTT
GTGCGCTGCGGAGATCAGAGCGCAGCGAAGGCGGCCGGCGGAGGCCATCC
AGGCTGGCCAGGATGTCGAATGGGCTGTTCAGGCCGGCAACGCCCCGTCG
TTGTACGCTGGACATTAA
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