mRNA_P-wetherbeei_contig757.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig757.2.1
Unique NamemRNA_P-wetherbeei_contig757.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig757.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig757contigP-wetherbeei_contig757:1130..2744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1548
Hectar predicted targeting categoryother localisation
Exons2
Cds size1359
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.0834274-UTR-P-wetherbeei_contig757:1129..11381683186989.0834274-UTR-P-wetherbeei_contig757:1129..1138Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig757 1130..1138 -
1683186989.1157455-UTR-P-wetherbeei_contig757:2564..27441683186989.1157455-UTR-P-wetherbeei_contig757:2564..2744Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig757 2565..2744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186989.0947666-CDS-P-wetherbeei_contig757:1138..19061683186989.0947666-CDS-P-wetherbeei_contig757:1138..1906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig757 1139..1906 -
1683186989.1051953-CDS-P-wetherbeei_contig757:1973..25641683186989.1051953-CDS-P-wetherbeei_contig757:1973..2564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig757 1974..2564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig757.2.1prot_P-wetherbeei_contig757.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig757 1139..2564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig757.2.1

>prot_P-wetherbeei_contig757.2.1 ID=prot_P-wetherbeei_contig757.2.1|Name=mRNA_P-wetherbeei_contig757.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=453bp
MPSTPSPFAPPAAATAAMGMVAMVLKPVFTAAVTAVGRRWSERSCSSLAC
GTLAALSLSVCSTTRRRRRHRACRRRRRWRPGSRRRAALLMSPWRSRPFL
PPRCCGRQRSARRCCRRRAPRASSSRRANSMAVSTVVAASAVPSALASAS
ALAVPALAAGALRAMGTARFVRNSPTRQRRSRWRRHLRGAATKRSSTGGG
SGGGSGGGGGGGGAGGSNADAVLQGDFPAAAAQRREVVIFRMRSLELVKR
KYVAWAGYACGQHEESILLFDLTIYRRNRRLLGALVLTSGWDERWRYAPS
VPLAGASAGALSAGGRLKGNGAPKGEKPGKSIEMVLPNMILDDAKDRLGG
GGDGGGGCGVVAVAAAVAAAVAAAAAVAAAVAVTPTATADGGYACTAGGG
EAAAIVAHTYTPHPIVSLATLRFVRRSIKMVDRAWRQQERGAGDRFLQFK
YT*
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mRNA from alignment at P-wetherbeei_contig757:1130..2744-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig757.2.1 ID=mRNA_P-wetherbeei_contig757.2.1|Name=mRNA_P-wetherbeei_contig757.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1615bp|location=Sequence derived from alignment at P-wetherbeei_contig757:1130..2744- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGATGGCGAAGGTCCTGCTGGAGCACCCATGGCTGGCCGGACGGCGG
ACGGAAGGCATCTGCGCGGCGGCGGCGGCGCTGCTCGCTCACCTGAAGCG
GATCGCCGCCGAGGACGCGACGGCTGCGGCGGCTGCCGTCGGCTGGCGTG
ACCGCTTCGTCGTAACTGTCGGCGTCTTCGATGCCATCCACCCCATCGCC
ATTCGCGCCGCCGGCGGCCGCGACAGCGGCCATGGGCATGGTGGCCATGG
TCCTCAAGCCGGTCTTTACGGCGGCGGTTACGGCGGTCGGGAGGCGGTGG
TCCGAACGGAGCTGTTCCTCGCTGGCCTGCGGGACTTTGGCGGCGCTGTC
GTTGTCGGTGTGCTCGACGACGCGGCGGCGGAGGCGGCATCGGGCCTGCC
GCCGGCGGCGCCGCTGGCGGCCCGGCTCGCGGCGGCGCGCCGCGTTGCTG
ATGTCGCCGTGGCGGTCTCGGCCGTTTCTGCCTCCGCGGTGCTGCGGGAG
GCAGCGAAGCGCGCGGCGCTGCTGTCGGCGAAGGGCCCCGCGTGCTTCGT
CCTCGCGGAGGGCGAATTCGATGGCGGTTTCGACGGTTGTCGCGGCTTCA
GCGGTGCCGTCGGCTTTGGCGTCGGCGTCGGCTTTGGCGGTTCCAGCGCT
GGCGGCGGGAGCGCTGCGAGCAATGGGGACTGCAAGATTTGTGCGAAATT
CGCCGACCCGGCAGCGGCGCTCGCGTTGGAGAAGGCACCTGCGTGGGGCT
GCAACAAAGCGTTCCAGCACGTGACAACAGTGATGACAGCACCGGCGACG
ACGACGACGACGATGATGGCGGCTGGAGCGGCGGCGGCGGCGGTGGCAGT
GGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGCAGGAGGAAGCAA
CGCCGATGCCGTTCTACAGGGTGACTTTCCCGCTGCGGCCGCTCAACGAC
GCGAAGTGGTGATTTTCAGAATGCGAAGTCTGGAGCTTGTGAAACGAAAA
TACGTGGCGTGGGCGGGATATGCATGTGGGCAGCACGAGGAATCAATTCT
GCTTTTTGATTTGACGATTTACCGTCGGAATCGGCGGCTTCTTGGGGCCT
TGGTGCTGACAAGCGGTTGGGACGAGCGATGGCGGTACGCACCATCAGTA
CCGTTGGCGGGCGCTAGCGCCGGGGCGTTGTCAGCGGGCGGGCGGTTGAA
GGGAAATGGCGCTCCCAAAGGGGAAAAACCCGGGAAATCAATTGAGATGG
TGCTGCCTAACATGATCTTAGATGACGCTAAGGATCGCCTCGGCGGCGGC
GGTGATGGCGGCGGTGGTTGTGGCGTTGTGGCAGTGGCGGCGGCAGTGGC
GGCGGCAGTGGCGGCTGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGACGC
CGACGGCGACGGCGGACGGTGGTTATGCGTGCACAGCTGGGGGTGGCGAG
GCAGCTGCTATTGTGGCTCACACATACACGCCCCATCCAATCGTCTCGCT
GGCGACTTTGCGTTTTGTGCGGCGGTCGATAAAAATGGTAGACAGGGCAT
GGCGGCAACAGGAGCGCGGGGCCGGCGACCGGTTTCTCCAATTTAAATAC
ACCTAGACTTCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig757:1130..2744-

>mRNA_P-wetherbeei_contig757.2.1 ID=mRNA_P-wetherbeei_contig757.2.1|Name=mRNA_P-wetherbeei_contig757.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1359bp|location=Sequence derived from alignment at P-wetherbeei_contig757:1130..2744- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCATCCACCCCATCGCCATTCGCGCCGCCGGCGGCCGCGACAGCGGC
CATGGGCATGGTGGCCATGGTCCTCAAGCCGGTCTTTACGGCGGCGGTTA
CGGCGGTCGGGAGGCGGTGGTCCGAACGGAGCTGTTCCTCGCTGGCCTGC
GGGACTTTGGCGGCGCTGTCGTTGTCGGTGTGCTCGACGACGCGGCGGCG
GAGGCGGCATCGGGCCTGCCGCCGGCGGCGCCGCTGGCGGCCCGGCTCGC
GGCGGCGCGCCGCGTTGCTGATGTCGCCGTGGCGGTCTCGGCCGTTTCTG
CCTCCGCGGTGCTGCGGGAGGCAGCGAAGCGCGCGGCGCTGCTGTCGGCG
AAGGGCCCCGCGTGCTTCGTCCTCGCGGAGGGCGAATTCGATGGCGGTTT
CGACGGTTGTCGCGGCTTCAGCGGTGCCGTCGGCTTTGGCGTCGGCGTCG
GCTTTGGCGGTTCCAGCGCTGGCGGCGGGAGCGCTGCGAGCAATGGGGAC
TGCAAGATTTGTGCGAAATTCGCCGACCCGGCAGCGGCGCTCGCGTTGGA
GAAGGCACCTGCGTGGGGCTGCAACAAAGCGTTCCAGCACGGGCGGTGGC
AGTGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGCAGGAGGAAG
CAACGCCGATGCCGTTCTACAGGGTGACTTTCCCGCTGCGGCCGCTCAAC
GACGCGAAGTGGTGATTTTCAGAATGCGAAGTCTGGAGCTTGTGAAACGA
AAATACGTGGCGTGGGCGGGATATGCATGTGGGCAGCACGAGGAATCAAT
TCTGCTTTTTGATTTGACGATTTACCGTCGGAATCGGCGGCTTCTTGGGG
CCTTGGTGCTGACAAGCGGTTGGGACGAGCGATGGCGGTACGCACCATCA
GTACCGTTGGCGGGCGCTAGCGCCGGGGCGTTGTCAGCGGGCGGGCGGTT
GAAGGGAAATGGCGCTCCCAAAGGGGAAAAACCCGGGAAATCAATTGAGA
TGGTGCTGCCTAACATGATCTTAGATGACGCTAAGGATCGCCTCGGCGGC
GGCGGTGATGGCGGCGGTGGTTGTGGCGTTGTGGCAGTGGCGGCGGCAGT
GGCGGCGGCAGTGGCGGCTGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGA
CGCCGACGGCGACGGCGGACGGTGGTTATGCGTGCACAGCTGGGGGTGGC
GAGGCAGCTGCTATTGTGGCTCACACATACACGCCCCATCCAATCGTCTC
GCTGGCGACTTTGCGTTTTGTGCGGCGGTCGATAAAAATGGTAGACAGGG
CATGGCGGCAACAGGAGCGCGGGGCCGGCGACCGGTTTCTCCAATTTAAA
TACACCTAG
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