mRNA_P-wetherbeei_contig7566.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7566.1.1
Unique NamemRNA_P-wetherbeei_contig7566.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: A0A8J9R9A7_9CHLO (1-aminocyclopropane-1-carboxylate synthase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9R9A7_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 2.900e-11
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  808 TALPQAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPTWAAERALF 1035
            + L Q    ++L D+ F+D Y+AEN RRL ASY+ +T  L  AG+P+T A   +F+WVD+R +L  PTW AER L+
Sbjct:  306 STLIQETAHQMLQDQDFVDLYIAENLRRLDASYSALTGALDRAGIPYTPATGAIFLWVDMRKYLSEPTWQAERQLW 381          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: A0A067CQ56_SAPPC (Aminotran_1_2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ56_SAPPC)

HSP 1 Score: 76.3 bits (186), Expect = 3.870e-11
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  802 HFTALPQA---AMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPTWAAERAL 1032
            +F+ +P     ++A +L+D  +  AYLAEN   L +SYA + A L    VP+  AAAGMFVW+DLR FLDAPT+AAE+AL
Sbjct:  298 YFSGVPNVLLDSLATMLADLPWCSAYLAENKALLRSSYAAIAAVLEAHRVPYVPAAAGMFVWIDLREFLDAPTFAAEQAL 377          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: I0YQX0_COCSC (PLP-dependent transferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQX0_COCSC)

HSP 1 Score: 72.8 bits (177), Expect = 2.620e-10
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  808 TALPQAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPTWAAER 1026
            + L Q A  ++L D  F++ Y+AEN RRL ASY  +TA L  AG+P+T A   +F+WVD+R  L  PTW AER
Sbjct:  204 STLVQEAAHQMLQDHDFVNHYIAENLRRLEASYDALTAALEKAGIPYTPAQGAIFLWVDMRAHLSEPTWQAER 276          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: A0A383W6A9_TETOB (Uncharacterized protein n=4 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W6A9_TETOB)

HSP 1 Score: 72.8 bits (177), Expect = 5.910e-10
Identity = 87/219 (39.73%), Postives = 115/219 (52.51%), Query Frame = 1
Query:  799 NHFTALP---QAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRN-FLDAP-TWAAERALFLRLRRGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXGGDXXXXXXXXXXXXXXXXXXXXXXEASFSGAMALGGGVVLTPGESQRASEPGFFRVCYAYVPLPTLELAMARLRAAL 1440
            ++F + P   Q ++++LLSD+ +L  YL EN RRL  +YA VT+ L  AG+P+T A AGMF+WVDLR  F   P +W  E AL+  + +                          XXXXXXXXXXXXXXXXXXXX      GG                       EA+    MA    VVLTPG +  A+EPG+FRVCYA+    +L  A++R+ AA+
Sbjct:  288 SYFNSTPCPLQWSLSQLLSDKQWLQHYLQENRRRLREAYASVTSGLDAAGIPYTAAPAGMFLWVDLRAAFGGQPGSWEDEAALWRCMAQ-----------------QHRVVLTPGXXXXXXXXXXXXXXXXXXXXXTPTAFGGQPGSWED----------------EAALWRCMAQQHRVVLTPGAACHAAEPGWFRVCYAWTSPGSLPAAVSRIAAAV 473          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: A0A0D2MGF5_9CHLO (Aminotran_1_2 domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MGF5_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-9
Identity = 66/241 (27.39%), Postives = 91/241 (37.76%), Query Frame = 1
Query:  742 AFLCSVLTFSFPFPHRRTPNHFTALPQAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAG---VPFTEAAAGMFVWVDLRNFLDAPTWAAERALFLRLRRGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXGGDXXXXXXXXXXXXXXXXXXXXXXEASFSGAMALGGGVVLTPGESQRASEPGFFRVCYAYVPLPTLELAMARLRAALLEPEA 1455
            A LC++  F+ P           A  Q   A LL+D  FL +++AEN RRLA SY ++T  LA A    VPF  A A MF+WVDLR  L APTW  E +L+  +                                                                                            ++LTPG +  A  PGFFR+C+A++P   L +A AR++AA+ E +A
Sbjct:  290 AALCNLAYFALP----------AASVQWLFATLLADAKFLASFVAENNRRLAHSYDLLTGALASAEDGPVPFAPATAAMFLWVDLRAGLRAPTWEEEESLWSHMVEAKR---------------------------------------------------------------------------------------LLLTPGRACHAEAPGFFRICWAWMPAEALPVAAARIKAAVREHKA 433          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: A0A1V9Z229_9STRA (1-aminocyclopropane-1-carboxylate synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z229_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.530e-9
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  802 HFTALPQA---AMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPTWAAERAL 1032
            +F+ +P      +A +L D ++   YLAEN  +L ASY  VT  L    VPF  A+AGMFVW+DL  FL APTWA+E+AL
Sbjct:  294 YFSGVPNYLLDGLATMLGDLSWCQEYLAENNAQLRASYIAVTDVLTAYDVPFIPASAGMFVWIDLGQFLKAPTWASEQAL 373          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: A0A7J7QKJ7_9CHLO (Pyridoxal phosphate-dependent transferase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QKJ7_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.650e-8
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  799 NHFTALP---QAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPT--WAAERALF 1035
            ++F + P   Q +++++LSDR +L  YL EN RRL  +YA VT+ L  AG+P+T A AGMFVWVDLR         WA E AL+
Sbjct:  295 SYFNSTPCPLQWSLSQMLSDRQWLQHYLQENKRRLRQAYASVTSGLDTAGIPYTPAPAGMFVWVDLRAAFGGRRGGWADEEALW 378          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: A0A0L0DPZ2_THETB (ACC synthase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPZ2_THETB)

HSP 1 Score: 67.4 bits (163), Expect = 2.400e-8
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  820 QAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPTWAAERALFLRL 1044
            Q A+  LL D  ++D+YLA +  RL  +Y VVT  L   G+P+  A AGMF  VDLR FLD PTW  E  L+ RL
Sbjct:  288 QWALHHLLVDMPWIDSYLATSKSRLRDAYQVVTDALDACGIPYVPAVAGMFFVVDLRQFLDEPTWEGEARLWQRL 362          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: F0XZ90_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ90_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 2.490e-7
Identity = 62/213 (29.11%), Postives = 79/213 (37.09%), Query Frame = 1
Query:  805 FTALP---QAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPTWAAERALFLRLRRGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXGGDXXXXXXXXXXXXXXXXXXXXXXEASFSGAMALGGGVVLTPGESQRASEPGFFRVCYAYVPLPTLELAMARLRA 1434
            FT +P   QA +A LLSD AF+DAYLAENAR LAAS     A L    +P+     GMF+W D  + L       +R  + R     A                                                                          EA+   A+     VVLTPG SQ A EPGFFR+C+A+V    L +A+A+  A
Sbjct:  333 FTCVPGPCQAMVAALLSDEAFVDAYLAENARALAASRDACAAVLDRLRLPYLRPRYGMFLWCDFSSLLPLIIGDGKRRAYSRAALFEA--------------------------------------------------------------------------EAALYDALLNELRVVLTPGASQHAPEPGFFRICFAFVERDVLLVALAKFEA 471          
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Match: UPI001F448A65 (aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=2 Tax=Streptomyces sp. MBT65 TaxID=1488395 RepID=UPI001F448A65)

HSP 1 Score: 63.9 bits (154), Expect = 3.330e-7
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  820 QAAMARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVWVDLRNFLDAPTWAAERALF 1035
            QA + RLL+D A + A+LAEN RRL+ASY    A L   G+P+  A AG  VW DL  +L  P +A ERAL+
Sbjct:  248 QAHLTRLLADPAHVHAFLAENRRRLSASYTRAAALLDGYGIPYAPAQAGCSVWADLAAWLPRPGFAGERALW 319          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7566.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A8J9R9A7_9CHLO2.900e-1147.371-aminocyclopropane-1-carboxylate synthase n=1 Tax... [more]
A0A067CQ56_SAPPC3.870e-1151.25Aminotran_1_2 domain-containing protein n=2 Tax=Sa... [more]
I0YQX0_COCSC2.620e-1049.32PLP-dependent transferase n=1 Tax=Coccomyxa subell... [more]
A0A383W6A9_TETOB5.910e-1039.73Uncharacterized protein n=4 Tax=Tetradesmus obliqu... [more]
A0A0D2MGF5_9CHLO1.220e-927.39Aminotran_1_2 domain-containing protein n=1 Tax=Mo... [more]
A0A1V9Z229_9STRA1.530e-948.751-aminocyclopropane-1-carboxylate synthase n=1 Tax... [more]
A0A7J7QKJ7_9CHLO1.650e-847.62Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]
A0A0L0DPZ2_THETB2.400e-849.33ACC synthase n=1 Tax=Thecamonas trahens ATCC 50062... [more]
F0XZ90_AURAN2.490e-729.11Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI001F448A653.330e-750.00aminotransferase class I/II-fold pyridoxal phospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7566contigP-wetherbeei_contig7566:2..1603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008619588.1
PFAMsAminotran_1_2
Model size1602
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.5e-12
EggNOG OGsCOG0436@1|root,KOG0256@2759|Eukaryota
Description1-aminocyclopropane-1-carboxylate synthase activity
Cds size630
COG categoryE
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.7782104-UTR-P-wetherbeei_contig7566:1..8291683186988.7782104-UTR-P-wetherbeei_contig7566:1..829Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7566 2..829 +
1683186988.816014-UTR-P-wetherbeei_contig7566:1459..16031683186988.816014-UTR-P-wetherbeei_contig7566:1459..1603Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7566 1460..1603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.7980192-CDS-P-wetherbeei_contig7566:829..14591683186988.7980192-CDS-P-wetherbeei_contig7566:829..1459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7566 830..1459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7566.1.1prot_P-wetherbeei_contig7566.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7566 830..1459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7566.1.1

>prot_P-wetherbeei_contig7566.1.1 ID=prot_P-wetherbeei_contig7566.1.1|Name=mRNA_P-wetherbeei_contig7566.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MARLLSDRAFLDAYLAENARRLAASYAVVTARLAYAGVPFTEAAAGMFVW
VDLRNFLDAPTWAAERALFLRLRRGAAAGRGSGGNGNVGGGGVGGENKSG
GYGAGGGSGSDGDGGRGDGDDGNGGGGGDGGTGSSDVSSGGRGSSSGSGN
FEASFSGAMALGGGVVLTPGESQRASEPGFFRVCYAYVPLPTLELAMARL
RAALLEPEA*
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mRNA from alignment at P-wetherbeei_contig7566:2..1603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7566.1.1 ID=mRNA_P-wetherbeei_contig7566.1.1|Name=mRNA_P-wetherbeei_contig7566.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1602bp|location=Sequence derived from alignment at P-wetherbeei_contig7566:2..1603+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGTTTTTGACCTTTGCCGGCTTTTGCCTTCGCTTTGGCTTTCTGGT ACAAAACCATCTTACCAGATTGTTTTGCCTTTTGTCAGCCTTCATTGGCT AGTGGTCTAGGGGGAATCCTTCAGGTGGCTTCGGCCGAGCGTTTTACTGT GGTGTGATCTGTGGCCAGTCGTAGAGAAGACCTCCGCATTTTCCCCGTAT CATGTTCTGTATTTCTTGTCAAGCCAAGAAACAGTCTCTCGCGCGTTCCG CATGAGTAGCATTCCCCCCTTGAAAACGTAGTTGTCCCGCGACGGCCGCC CGCCCCCGTGGCGTACCTCACGCCCCGGCACCTGCGCTAGTGGTGTGCGG GCTGTGGACGGCCGTTCATTGCAGCCGACGGAGCAAGACAAGGACGGTTC CGTGCTGGAGGCGAAAGAGGCTTCCGAGCAGCTAACGGCGCGAGTCGTCT GCTGAGATGCTCGTCTATGGCATTAATTTTGTCAATGTTTCCTCATTGTT GTGGATGTTTGGCTAGCAGTAGAAGGGACGGCTTTTCAACTGGAGGAGTT TTCTCGAAGTTGCATCTTTGTCATCTCTCCTCCCCCGTGAAGCTGTTCAG CATGCATCCATCCCGGTCTGAGCTTTCCTCCTCTTTGACGTCTTTCACTC CCCTGGTCCCGTCCCCACATTTCTCGTCCCCCCCTTCCTACCTCCCGCCG CCGCAAGTATCAATGTCGATCCTGCCCCCCATCCCGTCCTCGCCTTCCTT TGTTCCGTCCTCACATTCTCGTTCCCGTTTCCTCACCGACGCACACCCAA TCATTTCACCGCACTCCCACAGGCGGCGATGGCGCGGCTGCTCTCCGACC GTGCCTTTCTTGACGCCTACCTCGCCGAGAACGCCCGCCGCCTCGCTGCC TCGTACGCTGTCGTCACCGCCCGTCTTGCCTATGCCGGCGTGCCCTTCAC TGAGGCGGCGGCCGGCATGTTCGTGTGGGTCGATTTGAGGAACTTTCTCG ACGCGCCGACCTGGGCGGCGGAGCGGGCACTGTTCTTGCGGCTGCGGCGG GGCGCGGCAGCCGGCAGGGGCAGCGGTGGCAATGGAAACGTTGGCGGCGG CGGGGTTGGTGGTGAGAACAAGAGCGGAGGTTATGGCGCCGGCGGTGGTA GTGGCAGTGACGGCGACGGTGGCCGCGGTGATGGCGACGACGGCAACGGC GGGGGTGGCGGCGATGGCGGCACTGGTAGTAGTGATGTAAGCAGTGGCGG GAGAGGCAGCAGCAGCGGTAGCGGCAATTTCGAGGCCAGTTTTTCTGGCG CTATGGCGTTGGGCGGCGGCGTGGTGCTGACGCCGGGCGAATCGCAGCGG GCGTCGGAGCCCGGCTTCTTCCGGGTGTGCTACGCGTATGTGCCGTTACC GACGTTAGAGTTGGCCATGGCGCGGCTGCGGGCGGCACTGCTCGAACCCG AGGCGTAAGAATGCAAGATTTTGAGCGACCCACTTCCGCGACTGGTTACA ACGTTAAACATATGATGAGATACCAGTGTCGCTTTAATAATGTCATACAT GATACGAGGCTGCAGTGCTGTACATCTGCACCATGGGAACTAAGTGAGCC CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7566:2..1603+

>mRNA_P-wetherbeei_contig7566.1.1 ID=mRNA_P-wetherbeei_contig7566.1.1|Name=mRNA_P-wetherbeei_contig7566.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig7566:2..1603+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGGCTGCTCTCCGACCGTGCCTTTCTTGACGCCTACCTCGCCGA
GAACGCCCGCCGCCTCGCTGCCTCGTACGCTGTCGTCACCGCCCGTCTTG
CCTATGCCGGCGTGCCCTTCACTGAGGCGGCGGCCGGCATGTTCGTGTGG
GTCGATTTGAGGAACTTTCTCGACGCGCCGACCTGGGCGGCGGAGCGGGC
ACTGTTCTTGCGGCTGCGGCGGGGCGCGGCAGCCGGCAGGGGCAGCGGTG
GCAATGGAAACGTTGGCGGCGGCGGGGTTGGTGGTGAGAACAAGAGCGGA
GGTTATGGCGCCGGCGGTGGTAGTGGCAGTGACGGCGACGGTGGCCGCGG
TGATGGCGACGACGGCAACGGCGGGGGTGGCGGCGATGGCGGCACTGGTA
GTAGTGATGTAAGCAGTGGCGGGAGAGGCAGCAGCAGCGGTAGCGGCAAT
TTCGAGGCCAGTTTTTCTGGCGCTATGGCGTTGGGCGGCGGCGTGGTGCT
GACGCCGGGCGAATCGCAGCGGGCGTCGGAGCCCGGCTTCTTCCGGGTGT
GCTACGCGTATGTGCCGTTACCGACGTTAGAGTTGGCCATGGCGCGGCTG
CGGGCGGCACTGCTCGAACCCGAGGCGTAA
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