mRNA_P-wetherbeei_contig7565.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7565.1.3
Unique NamemRNA_P-wetherbeei_contig7565.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7565.1.3 vs. uniprot
Match: A0A835YR80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR80_9STRA)

HSP 1 Score: 201 bits (511), Expect = 8.340e-61
Identity = 93/172 (54.07%), Postives = 127/172 (73.84%), Query Frame = 3 
Query:  105 AGIAPPKAPPRNIGYGGGGNEPYVREIDDDERQLVLTNWLSYARRKSTEEGRSSGRDFESVAVIADMLPWRRGPLSGRKRRFSLAACRGEAVDAIACLQVGPDNSKILSFLSQELVMTVQYITVNPKAAKLGAGTFLVRQVKEVGKVENIRVDFSPLQQIYAGRFYLAATTL 620
            A I+PP  PP    YGGGGN+PY+R+IDD+E+QLVL  W+ Y+RR + EE     R  E + V   M  WRRG    RKRRF+LAAC+G+ VDA+ C+Q+GPDN    +F++Q++VMTV +I V+P  AKLGAGTFLV+Q+KE+G+ + IRVDF PL+++Y GRFYLA+ ++
Sbjct:    2 ASISPPTKPPELKKYGGGGNDPYIRDIDDEEKQLVLGGWIGYSRRIAMEE--EDPRLEEFMQVCRKMQAWRRGTGGARKRRFALAACQGDNVDAVVCVQIGPDNRSFAAFITQDMVMTVGFIAVSPSRAKLGAGTFLVKQLKEIGRAQGIRVDFEPLKEVYKGRFYLASISM 171
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BLAST of mRNA_P-wetherbeei_contig7565.1.3 vs. uniprot
Match: D8LQP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQP8_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 7.490e-38
Identity = 64/154 (41.56%), Postives = 102/154 (66.23%), Query Frame = 3 
Query:  159 GNEPYVREIDDDERQLVLTNWLSYARRKSTEEGRSSGRDFESVAVIADMLPWRRGPLSGRKRRFSLAACRGEAVDAIACLQVGPDNSKILSFLSQELVMTVQYITVNPKAAKLGAGTFLVRQVKEVGKVENIRVDFSPLQQIYAGRFYLAATTL 620
            G+E +VRE+ + E+ ++LT+W  YA+R   E      +  E + ++  M+ WR G ++ RKRRF+LA C+G +V A+AC+Q+GP N  + SFL+QE  M+V  + V+P + K  AG  L R++K++GK+EN+ V F P++ IY+GRFY A   +
Sbjct:  113 GDELFVRELIEPEKSVILTSWRDYAQRDGGE------KFAECIEILNKMVAWRSGVVAARKRRFTLACCKGSSVQAVACVQIGPKNESVRSFLAQEACMSVCLLNVDPSSPKFKAGAHLCREIKDIGKLENMAVSFDPIKDIYSGRFYAATLAM 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7565.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YR80_9STRA8.340e-6154.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LQP8_ECTSI7.490e-3841.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7565contigP-wetherbeei_contig7565:218..2946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQP8
Model size1012
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.86e-40
EggNOG OGs2EUBT@1|root,2SWI2@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001820.1
Cds size585
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7565.1.3prot_P-wetherbeei_contig7565.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7565 607..2908 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.6648822-UTR-P-wetherbeei_contig7565:217..6061683186988.6648822-UTR-P-wetherbeei_contig7565:217..606Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7565 218..606 -
1683186988.730932-UTR-P-wetherbeei_contig7565:2908..29461683186988.730932-UTR-P-wetherbeei_contig7565:2908..2946Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7565 2909..2946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.6738985-CDS-P-wetherbeei_contig7565:606..6611683186988.6738985-CDS-P-wetherbeei_contig7565:606..661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7565 607..661 -
1683186988.6819437-CDS-P-wetherbeei_contig7565:942..9861683186988.6819437-CDS-P-wetherbeei_contig7565:942..986Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7565 943..986 -
1683186988.6899955-CDS-P-wetherbeei_contig7565:1343..14491683186988.6899955-CDS-P-wetherbeei_contig7565:1343..1449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7565 1344..1449 -
1683186988.7008414-CDS-P-wetherbeei_contig7565:2130..22971683186988.7008414-CDS-P-wetherbeei_contig7565:2130..2297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7565 2131..2297 -
1683186988.7114058-CDS-P-wetherbeei_contig7565:2514..26251683186988.7114058-CDS-P-wetherbeei_contig7565:2514..2625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7565 2515..2625 -
1683186988.7193549-CDS-P-wetherbeei_contig7565:2806..29081683186988.7193549-CDS-P-wetherbeei_contig7565:2806..2908Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7565 2807..2908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7565.1.3

>prot_P-wetherbeei_contig7565.1.3 ID=prot_P-wetherbeei_contig7565.1.3|Name=mRNA_P-wetherbeei_contig7565.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MAYGFRPRMPGVTRPRRNVRMAAGIAPPKAPPRNIGYGGGGNEPYVREID
DDERQLVLTNWLSYARRKSTEEGRSSGRDFESVAVIADMLPWRRGPLSGR
KRRFSLAACRGEAVDAIACLQVGPDNSKILSFLSQELVMTVQYITVNPKA
AKLGAGTFLVRQVKEVGKVENIRVDFSPLQQIYAGRFYLAATTL*
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mRNA from alignment at P-wetherbeei_contig7565:218..2946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7565.1.3 ID=mRNA_P-wetherbeei_contig7565.1.3|Name=mRNA_P-wetherbeei_contig7565.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2729bp|location=Sequence derived from alignment at P-wetherbeei_contig7565:218..2946- (Phaeothamnion wetherbeei SAG_119_79)
AATGTGCACTATGTTTCGTAGTCGCGTTTTCCGGACCCATGGCGTATGGA
TTTCGACCCAGGATGCCTGGCGTTACTCGACCACGAAGGAACGTGCGAAT
GGCTGCTGGCATAGCGCCTCCGAAAGCGCCTCCGAGAAATGTAAATAAGT
ATTATTCACTTCAGACCTTGGAATCCATGACGGCCGATTTGGGCGGTTTG
AACATCATGCCATTCTTTCTTCCTTTTGGCCCGTGTCATTATACAGTGAC
TGCGATCGCCTCACGACCGCGGCCTGCCCTTCTTTTTTCATCTTCCAATC
CGGCCCTGTCGCGGAAAACAGATAGGCTACGGCGGCGGCGGCAACGAGCC
ATACGTCCGCGAAATCGACGACGACGAGCGGCAGCTGGTCCTCACAAACT
GGCTTTCCTACGCCCGCCGAAAATCCACCGAGGCGAGCATCAGCCAGTCT
TTGCAGATTTCGTCGTCTGCTTGATTTTTGAAACGCAGATTCCCACCGTT
CACGATATTCAGCTCTTGTTCGCTGCATTCGGCCATTGTGCTGCCTTGGC
AAGCCCGCCTCGTTTCTCACCGCTCGCGCGTCCTATGTCCCTCCTCGCAA
ATGCGTGCGGCGTATGATTCCCGTTTGCCTCTTCTCATGGTCGCGGCAGG
AAGGACGGAGTAGTGGGAGAGACTTCGAGAGTGTGGCTGTGATTGCGGAC
ATGTTGCCGTGGCGGCGGGGGCCGCTGTCCGGCCGCAAGCGGCGCTTCAG
CCTTGCGGCATGCCGCGGCGAAGCGGTGGATGCCATCGCCTGCCTGCAGG
TGGGCCCTGACAACAGGTGAGACTGACTTTTCAGAACGTCTGGCAAGGAG
GTTCTTGGGAAAGGATGGCTCGGAGGTTTTTCCCTGGAAGATTGGTGCCA
TCGCGACAGCTTGGGTGTTCGCATCTGAAAGGACGGCAACACACAGCTAG
TCAAGTATGAAGCGAGACATTGGACTTGACATTTGTTTTCACAGACCAGT
AATCCATTCATTGCATTGCGGATGATGCGGCGTGGCTTTCGCTAGTCCGT
GTATTCTTTTGAGAAACTTCATTTCCTTTTGAAAAGGGTGGCGCACACTC
AGGCAGATTTGAATGTGACGTAGGTCGCGAAGGTGGGGTTATGCCCCCGA
GTTAGATTGTTCATGAAAAATCTTGGCTATAAGCGCAAGGGGCGGGCAGC
GCGCCTGCCCGCTGATGCCGATTCTTGTCTTCCTCTTCTGCACCTCCTCT
GCATAAGCTACTCTGACCTGCCCTTCACATTTTTGCATGGTTCGCCGCCG
CTGCCGCATCTATCGCCGCTCCCGCCGCCTCCCACCGCCGCTGCCTGCTC
TTAAACGCATTCTGCCGCTGGCCCCGTCCGCTTGCCGCCGCCCTTTTGCT
GTTTCGCCCGCTTTTCCCACTCCGACTGCTCCATTCTTCTCCCTCTTCTC
TTTTCTGGCTGGTTCCTCTTGATGCCGTGCTGTTCGGCCTCGGTCAGCAA
GATTCTGTCATTTCTGTCCCAGGAGCTCGTGATGACGGTGCAATACATCA
CGGTCAATCCAAAGGCCGCAAAGCTCGGGGCAGGCACCTTCCTCGTGCGG
CAGGTGAGAAACTGCACTCGTCGCCTTTCGCGGTTGCGACGGGTATGGAG
TGACATCCGGTCGTCACCTTCACAGCCAACCGTTTTGTCCAGTTGAAACT
TGGCAGTTTTGCCAGCGTGTGGAGCTTGATGTACGCTGTTTTCTTTGCCG
AGCGACGTGAAATGTTAGAGCTTACTCCGCTACGTTACACGAAAACATAT
GCGTAGCTGAAACGCCCTTTCCCTCGCTCGTCACCGCGCCTGCTGTTTGG
TAATATTATGTCTTTTTTCCACGATTTTTTTCGTAAAGATGTTCTTTTAT
TCCGTTCATGGCCGCCCGGCTTGAAGAGCGCTCGGCCGCCCATCTTTGAC
TGCTCGCCAGGTGAAGGAGGTCGGAAAAGTCGAGAACATTCGGGTTGATT
TCAGGTGAGAGAGGCTAAGCGACCCGCGGCGGGTGCCGTTGCAGCAGCAG
CGATGGCGGTTGCAGGATCGCCGGGTACGGGCAGTTTGGACATTGTGCAA
TGAATGTATGTGGTGCTGACAGGCACTGCGTGCATATTGGCAACAATTTC
TTGTGAGAAAAACCTAAAGCATGACGCGAATCGAATCTGAGATCGGTCTT
CCTGCTAATTCGCTCCCTCGATCCGCCCTCTTCCCATTGCACTCCTTTCA
CGTCCACGTTAAAAAAACTCCCTTGCCCTGTCCAGCCCCCTGCAGCAGAT
TTATGCCGGGCGGTTCTACCTTGCCGCCACAACGCTGTAGCACGATTGTA
AGAGAAGCTTGGCAGCTAATCTTGCCTGGCTGGCTGCTGCTGCGGCGGCT
GCGAAAGGTCGAACGGAAGGGATGCATGGAGTAGCCAGGGGGCGAGCCAT
GGAAGCAATCGCCTCCAGGTTTCGTTTGTTTGAGGGGCGGGGAGTGTCTT
GTTCGTTCGGCGTGTTGTCAAAGACCTCTTTCTACCACACTGGAAATCTC
AGTACATATGAAACGAGCGGCCGTCTGCCGGACTCTCCATGGGTTGCCGG
TCAGGGTAACAACGATTCATGCTGTTGCGATGCGTGGCTAAAGTCGCTGG
CAGAGCGATTTATTGTTGAGTAATTAATGTTAGGGTTAGGGTTGGGGTTA
GGGTCAGGGTTAATGAATTGCATTCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7565:218..2946-

>mRNA_P-wetherbeei_contig7565.1.3 ID=mRNA_P-wetherbeei_contig7565.1.3|Name=mRNA_P-wetherbeei_contig7565.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig7565:218..2946- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTATGGATTTCGACCCAGGATGCCTGGCGTTACTCGACCACGAAG
GAACGTGCGAATGGCTGCTGGCATAGCGCCTCCGAAAGCGCCTCCGAGAA
ATATAGGCTACGGCGGCGGCGGCAACGAGCCATACGTCCGCGAAATCGAC
GACGACGAGCGGCAGCTGGTCCTCACAAACTGGCTTTCCTACGCCCGCCG
AAAATCCACCGAGGAAGGACGGAGTAGTGGGAGAGACTTCGAGAGTGTGG
CTGTGATTGCGGACATGTTGCCGTGGCGGCGGGGGCCGCTGTCCGGCCGC
AAGCGGCGCTTCAGCCTTGCGGCATGCCGCGGCGAAGCGGTGGATGCCAT
CGCCTGCCTGCAGGTGGGCCCTGACAACAGCAAGATTCTGTCATTTCTGT
CCCAGGAGCTCGTGATGACGGTGCAATACATCACGGTCAATCCAAAGGCC
GCAAAGCTCGGGGCAGGCACCTTCCTCGTGCGGCAGGTGAAGGAGGTCGG
AAAAGTCGAGAACATTCGGGTTGATTTCAGCCCCCTGCAGCAGATTTATG
CCGGGCGGTTCTACCTTGCCGCCACAACGCTGTAG
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