mRNA_P-wetherbeei_contig7562.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7562.1.1
Unique NamemRNA_P-wetherbeei_contig7562.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7562.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7562contigP-wetherbeei_contig7562:278..765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size457
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.562753-UTR-P-wetherbeei_contig7562:277..3431683186988.562753-UTR-P-wetherbeei_contig7562:277..343Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7562 278..343 -
1683186988.5983217-UTR-P-wetherbeei_contig7562:656..7651683186988.5983217-UTR-P-wetherbeei_contig7562:656..765Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7562 657..765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.5743332-CDS-P-wetherbeei_contig7562:343..4601683186988.5743332-CDS-P-wetherbeei_contig7562:343..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7562 344..460 -
1683186988.5850832-CDS-P-wetherbeei_contig7562:491..6561683186988.5850832-CDS-P-wetherbeei_contig7562:491..656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7562 492..656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7562.1.1prot_P-wetherbeei_contig7562.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7562 344..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7562.1.1

>prot_P-wetherbeei_contig7562.1.1 ID=prot_P-wetherbeei_contig7562.1.1|Name=mRNA_P-wetherbeei_contig7562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MSLRCGNEVCDTPLVCKIEEFHGILSGVNSTRRHVQRKRRTVFLPKPLSY
DSCTAMPDKSIVRKYMLRAARIARCAMISCCVSPSRPTRGPKS*
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mRNA from alignment at P-wetherbeei_contig7562:278..765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7562.1.1 ID=mRNA_P-wetherbeei_contig7562.1.1|Name=mRNA_P-wetherbeei_contig7562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=488bp|location=Sequence derived from alignment at P-wetherbeei_contig7562:278..765- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTGAACAGCGCGAGGCCTTTGCCGAAGCTAAGTATGGTGTCTACATG
GCGAACGGGTTGGCATCGCGTAGTAGGAGGCCCCAGGTGGAAACCGATCA
CAACGAGTCATGAGCCTCCGCTGTGGCAACGAGGTCTGTGATACCCCATT
AGTCTGCAAGATCGAGGAGTTCCACGGCATTCTGTCGGGCGTCAATAGCA
CCCGGCGGCACGTGCAGAGAAAGCGCAGAACTGTCTTCCTTCCTAAACCG
CTGAGTTATGATTCCTGTACTGCCGCCGCCGTTGCCCCGTGCGCTCGACT
CGGAGATGCCGGACAAGAGCATCGTTCGAAAGTACATGCTCCGCGCGGCG
AGGATTGCGCGGTGTGCCATGATCTCTTGCTGCGTCTCGCCTTCGCGGCC
GACGCGAGGACCCAAATCGTGAAAGGCCCGATGCTGAAGGAATTCTAGGT
CCTTCAGCGCCGTAGAAGCTTAGCGGCTTGACTACAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7562:278..765-

>mRNA_P-wetherbeei_contig7562.1.1 ID=mRNA_P-wetherbeei_contig7562.1.1|Name=mRNA_P-wetherbeei_contig7562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig7562:278..765- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCTCCGCTGTGGCAACGAGGTCTGTGATACCCCATTAGTCTGCAA
GATCGAGGAGTTCCACGGCATTCTGTCGGGCGTCAATAGCACCCGGCGGC
ACGTGCAGAGAAAGCGCAGAACTGTCTTCCTTCCTAAACCGCTGAGTTAT
GATTCCTGTACTGCCATGCCGGACAAGAGCATCGTTCGAAAGTACATGCT
CCGCGCGGCGAGGATTGCGCGGTGTGCCATGATCTCTTGCTGCGTCTCGC
CTTCGCGGCCGACGCGAGGACCCAAATCGTGA
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