mRNA_P-wetherbeei_contig7558.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.930e-15 Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 3
Query: 27 GRSKGRGRPPKSAAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGC-------LRRVAEARLGGGRSGGG 290
G+ +GR + S+ G+ ++KG+H C +C EGG L+CCDYCP ++HM+PCL L +P G WACP C + A + GGG+ GGG
Sbjct: 2939 GKKRGRPKSSPSSGPPKGAR-LFKGVHEATCSICGEGGALICCDYCPASFHMEPCLDLAKDPAGPWACPLCRAGTPKPVNPKAASLKGGGKGGGG 3032
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.760e-13 Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3
Query: 27 GRSKGRGRPPKSAAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGC 239
G+ +GR + S+ G+ ++KG+H C +C EGG L+CCDYCP ++HM+PCL L +P G WACP C
Sbjct: 2363 GKKRGRPKSSPSSGPPKGAR-LFKGVHEATCSMCGEGGALICCDYCPASFHMEPCLELAKDPAGPWACPLC 2432
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A6N2B2F8_SOLCI (PHD-type domain-containing protein n=1 Tax=Solanum chilense TaxID=4083 RepID=A0A6N2B2F8_SOLCI) HSP 1 Score: 67.0 bits (162), Expect = 3.930e-9 Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 3
Query: 105 HGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV 251
+ D C++C +GG L+CCD C YH + CLG+ PNGLW CP C+ ++
Sbjct: 230 YDDACMICADGGDLMCCDNCSSTYHHKICLGMQEVPNGLWYCPFCVCKI 278
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: M1VH65_CYAM1 (PHD-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VH65_CYAM1) HSP 1 Score: 66.2 bits (160), Expect = 8.490e-9 Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 3
Query: 63 AAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV-AEAR----LGGGRSGGGAGDKAS*QPIGW 326
AA+ G P D+C +C GG ++CCD CPM YH+Q C+GL P+G W CP C+ R+ E R LG S G+ AS P GW
Sbjct: 168 AAIAHGWAP------DDVCSICGLGGDIVCCDECPMGYHLQ-CIGLPSIPSGEWFCPACVLRIKVEERMRQELGLASS---LGEHASSIPTGW 250
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A7S9J4_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S9J4_NEMVE) HSP 1 Score: 65.9 bits (159), Expect = 1.320e-8 Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 3
Query: 102 LHGDLCVLCREGGTLLCCDYCPMAYHMQPCL--GLMFEPNGLWACPGCLRRVAEARLGGGRSGGGAGDKAS*QPIGWRWVT 338
+H D C +C++GG LLCCD CPMAYH++ CL +M P G W CP C + ++ + + WRWVT
Sbjct: 9 IHSDYCRVCKDGGQLLCCDKCPMAYHLK-CLIPPMMRVPTGEWKCPRCQSEPLKGKVE--------------RILHWRWVT 74
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: M1CHG0_SOLTU (Uncharacterized protein n=2 Tax=Solanum tuberosum TaxID=4113 RepID=M1CHG0_SOLTU) HSP 1 Score: 65.5 bits (158), Expect = 1.630e-8 Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 3
Query: 105 HGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV 251
+ D C++C +GG L+CCD C YH CLG+ PNG W CP C+ ++
Sbjct: 230 YDDACMICADGGNLMCCDNCSSTYHHNKCLGMQEVPNGSWYCPFCVCKI 278
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A3P7IXV6_STRVU (PHD-type domain-containing protein n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7IXV6_STRVU) HSP 1 Score: 61.6 bits (148), Expect = 1.720e-8 Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 3
Query: 48 RPPKSAAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHM---QPCLGLMFEPNGLWACPGCLR 245
RP + AVT WK ++ CV+CREGG LLCCD CP ++H+ +P + P G W C C R
Sbjct: 43 RPTEPIAVTD-----WKSINRTYCVVCREGGELLCCDACPASFHLLCHEPVIRREAIPRGRWLCNRCHR 106
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: UPI000E1C4E15 (increased DNA methylation 1-like n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI000E1C4E15) HSP 1 Score: 65.1 bits (157), Expect = 1.790e-8 Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 3
Query: 105 HGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV 251
+ D C++C +GG L+CCD C YH + CLG+ PNG W CP C+ ++
Sbjct: 235 YDDACMICADGGNLMCCDNCSSTYHHKICLGMQEVPNGSWYCPFCVCKI 283
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: UPI00109BD36C (LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BD36C) HSP 1 Score: 64.7 bits (156), Expect = 3.670e-8 Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 3
Query: 69 VTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFE-PNGLWACPGCLRRVAEARLGGGRSGGGAGDKAS*QPIGWRWVT 338
V M ST + +H D C +C++GG LLCCD CPMAYH++ + M P G W CP C + ++ + + WRWVT
Sbjct: 378 VEMTSTSS-EDIHSDYCRVCKDGGQLLCCDQCPMAYHLKCLIPPMKRVPTGEWKCPRCQTEPLKGKVE--------------RILHWRWVT 453
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A6P8IZH3_ACTTE (chromodomain-helicase-DNA-binding protein 4-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IZH3_ACTTE) HSP 1 Score: 64.7 bits (156), Expect = 3.720e-8 Identity = 33/91 (36.26%), Postives = 47/91 (51.65%), Query Frame = 3
Query: 69 VTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFE-PNGLWACPGCLRRVAEARLGGGRSGGGAGDKAS*QPIGWRWVT 338
V M ST + +H D C +C++GG LLCCD CPMAYH++ + M P+G W CP C + ++ + + WRWVT
Sbjct: 389 VEMTSTSS-EDIHSDYCRVCKDGGQLLCCDKCPMAYHLKCLIPPMKRVPSGEWKCPRCQSEPLKGKVE--------------RILHWRWVT 464 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7558.1.1 >prot_P-wetherbeei_contig7558.1.1 ID=prot_P-wetherbeei_contig7558.1.1|Name=mRNA_P-wetherbeei_contig7558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp MGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWback to top mRNA from alignment at P-wetherbeei_contig7558:331..1099- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7558.1.1 ID=mRNA_P-wetherbeei_contig7558.1.1|Name=mRNA_P-wetherbeei_contig7558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=769bp|location=Sequence derived from alignment at P-wetherbeei_contig7558:331..1099- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7558:331..1099- >mRNA_P-wetherbeei_contig7558.1.1 ID=mRNA_P-wetherbeei_contig7558.1.1|Name=mRNA_P-wetherbeei_contig7558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig7558:331..1099- (Phaeothamnion wetherbeei SAG_119_79)back to top |