mRNA_P-wetherbeei_contig7558.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7558.1.1
Unique NamemRNA_P-wetherbeei_contig7558.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.930e-15
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   27 GRSKGRGRPPKSAAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGC-------LRRVAEARLGGGRSGGG 290
            G+ +GR +   S+    G+  ++KG+H   C +C EGG L+CCDYCP ++HM+PCL L  +P G WACP C       +   A +  GGG+ GGG
Sbjct: 2939 GKKRGRPKSSPSSGPPKGAR-LFKGVHEATCSICGEGGALICCDYCPASFHMEPCLDLAKDPAGPWACPLCRAGTPKPVNPKAASLKGGGKGGGG 3032          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.760e-13
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   27 GRSKGRGRPPKSAAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGC 239
            G+ +GR +   S+    G+  ++KG+H   C +C EGG L+CCDYCP ++HM+PCL L  +P G WACP C
Sbjct: 2363 GKKRGRPKSSPSSGPPKGAR-LFKGVHEATCSMCGEGGALICCDYCPASFHMEPCLELAKDPAGPWACPLC 2432          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A6N2B2F8_SOLCI (PHD-type domain-containing protein n=1 Tax=Solanum chilense TaxID=4083 RepID=A0A6N2B2F8_SOLCI)

HSP 1 Score: 67.0 bits (162), Expect = 3.930e-9
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  105 HGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV 251
            + D C++C +GG L+CCD C   YH + CLG+   PNGLW CP C+ ++
Sbjct:  230 YDDACMICADGGDLMCCDNCSSTYHHKICLGMQEVPNGLWYCPFCVCKI 278          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: M1VH65_CYAM1 (PHD-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VH65_CYAM1)

HSP 1 Score: 66.2 bits (160), Expect = 8.490e-9
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 3
Query:   63 AAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV-AEAR----LGGGRSGGGAGDKAS*QPIGW 326
            AA+  G  P       D+C +C  GG ++CCD CPM YH+Q C+GL   P+G W CP C+ R+  E R    LG   S    G+ AS  P GW
Sbjct:  168 AAIAHGWAP------DDVCSICGLGGDIVCCDECPMGYHLQ-CIGLPSIPSGEWFCPACVLRIKVEERMRQELGLASS---LGEHASSIPTGW 250          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A7S9J4_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S9J4_NEMVE)

HSP 1 Score: 65.9 bits (159), Expect = 1.320e-8
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  102 LHGDLCVLCREGGTLLCCDYCPMAYHMQPCL--GLMFEPNGLWACPGCLRRVAEARLGGGRSGGGAGDKAS*QPIGWRWVT 338
            +H D C +C++GG LLCCD CPMAYH++ CL   +M  P G W CP C     + ++               + + WRWVT
Sbjct:    9 IHSDYCRVCKDGGQLLCCDKCPMAYHLK-CLIPPMMRVPTGEWKCPRCQSEPLKGKVE--------------RILHWRWVT 74          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: M1CHG0_SOLTU (Uncharacterized protein n=2 Tax=Solanum tuberosum TaxID=4113 RepID=M1CHG0_SOLTU)

HSP 1 Score: 65.5 bits (158), Expect = 1.630e-8
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 3
Query:  105 HGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV 251
            + D C++C +GG L+CCD C   YH   CLG+   PNG W CP C+ ++
Sbjct:  230 YDDACMICADGGNLMCCDNCSSTYHHNKCLGMQEVPNGSWYCPFCVCKI 278          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A3P7IXV6_STRVU (PHD-type domain-containing protein n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7IXV6_STRVU)

HSP 1 Score: 61.6 bits (148), Expect = 1.720e-8
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 3
Query:   48 RPPKSAAVTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHM---QPCLGLMFEPNGLWACPGCLR 245
            RP +  AVT      WK ++   CV+CREGG LLCCD CP ++H+   +P +     P G W C  C R
Sbjct:   43 RPTEPIAVTD-----WKSINRTYCVVCREGGELLCCDACPASFHLLCHEPVIRREAIPRGRWLCNRCHR 106          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: UPI000E1C4E15 (increased DNA methylation 1-like n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI000E1C4E15)

HSP 1 Score: 65.1 bits (157), Expect = 1.790e-8
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 3
Query:  105 HGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLWACPGCLRRV 251
            + D C++C +GG L+CCD C   YH + CLG+   PNG W CP C+ ++
Sbjct:  235 YDDACMICADGGNLMCCDNCSSTYHHKICLGMQEVPNGSWYCPFCVCKI 283          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: UPI00109BD36C (LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BD36C)

HSP 1 Score: 64.7 bits (156), Expect = 3.670e-8
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 3
Query:   69 VTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFE-PNGLWACPGCLRRVAEARLGGGRSGGGAGDKAS*QPIGWRWVT 338
            V M ST   + +H D C +C++GG LLCCD CPMAYH++  +  M   P G W CP C     + ++               + + WRWVT
Sbjct:  378 VEMTSTSS-EDIHSDYCRVCKDGGQLLCCDQCPMAYHLKCLIPPMKRVPTGEWKCPRCQTEPLKGKVE--------------RILHWRWVT 453          
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Match: A0A6P8IZH3_ACTTE (chromodomain-helicase-DNA-binding protein 4-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IZH3_ACTTE)

HSP 1 Score: 64.7 bits (156), Expect = 3.720e-8
Identity = 33/91 (36.26%), Postives = 47/91 (51.65%), Query Frame = 3
Query:   69 VTMGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFE-PNGLWACPGCLRRVAEARLGGGRSGGGAGDKAS*QPIGWRWVT 338
            V M ST   + +H D C +C++GG LLCCD CPMAYH++  +  M   P+G W CP C     + ++               + + WRWVT
Sbjct:  389 VEMTSTSS-EDIHSDYCRVCKDGGQLLCCDKCPMAYHLKCLIPPMKRVPSGEWKCPRCQSEPLKGKVE--------------RILHWRWVT 464          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7558.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.930e-1542.11Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE1.760e-1346.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6N2B2F8_SOLCI3.930e-946.94PHD-type domain-containing protein n=1 Tax=Solanum... [more]
M1VH65_CYAM18.490e-941.94PHD-type domain-containing protein n=1 Tax=Cyanidi... [more]
A7S9J4_NEMVE1.320e-838.27Predicted protein n=1 Tax=Nematostella vectensis T... [more]
M1CHG0_SOLTU1.630e-844.90Uncharacterized protein n=2 Tax=Solanum tuberosum ... [more]
A0A3P7IXV6_STRVU1.720e-842.03PHD-type domain-containing protein n=1 Tax=Strongy... [more]
UPI000E1C4E151.790e-844.90increased DNA methylation 1-like n=1 Tax=Solanum l... [more]
UPI00109BD36C3.670e-836.26LOW QUALITY PROTEIN: chromodomain-helicase-DNA-bin... [more]
A0A6P8IZH3_ACTTE3.720e-836.26chromodomain-helicase-DNA-binding protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7558contigP-wetherbeei_contig7558:331..1099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0RWQ5
PFAMsPHD,zf-CXXC
Model size769
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.13e-11
EggNOG OGsCOG0553@1|root,COG2940@1|root,KOG0383@2759|Eukaryota,KOG1084@2759|Eukaryota,2XF8R@2836|Bacillariophyta
DescriptionCXXC zinc finger domain
Cds size237
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.2228267-UTR-P-wetherbeei_contig7558:330..7881683186988.2228267-UTR-P-wetherbeei_contig7558:330..788Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7558 331..788 -
1683186988.2529628-UTR-P-wetherbeei_contig7558:1025..10991683186988.2529628-UTR-P-wetherbeei_contig7558:1025..1099Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7558 1026..1099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.2415428-CDS-P-wetherbeei_contig7558:788..10251683186988.2415428-CDS-P-wetherbeei_contig7558:788..1025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7558 789..1025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7558.1.1prot_P-wetherbeei_contig7558.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7558 789..1025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7558.1.1

>prot_P-wetherbeei_contig7558.1.1 ID=prot_P-wetherbeei_contig7558.1.1|Name=mRNA_P-wetherbeei_contig7558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MGSTPVWKGLHGDLCVLCREGGTLLCCDYCPMAYHMQPCLGLMFEPNGLW
ACPGCLRRVAEARLGGGRSGGGAGDKAS*
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mRNA from alignment at P-wetherbeei_contig7558:331..1099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7558.1.1 ID=mRNA_P-wetherbeei_contig7558.1.1|Name=mRNA_P-wetherbeei_contig7558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=769bp|location=Sequence derived from alignment at P-wetherbeei_contig7558:331..1099- (Phaeothamnion wetherbeei SAG_119_79)
AGGCAATTGGTGGCACTGCGTCAGCGGGCCGCAGCAAGGGCCGCGGCCGC CCGCCGAAGAGCGCGGCGGTCACCATGGGCAGCACGCCCGTCTGGAAGGG CCTGCACGGCGACCTCTGCGTGCTGTGCCGTGAGGGCGGGACGCTGCTGT GCTGCGACTATTGTCCGATGGCCTACCATATGCAGCCGTGTCTCGGGCTG ATGTTTGAGCCCAACGGGCTGTGGGCATGCCCGGGGTGCCTGCGCCGCGT GGCGGAGGCCCGCCTCGGCGGCGGCCGCAGTGGCGGTGGCGCCGGCGACA AGGCTTCGTAACAGCCTATCGGATGGCGGTGGGTGACCCGCAGCGGTTCA GCGGAACCGGCGCTGATGACCAGCCGCGGTCGGCGGCGGCGGCGGAACCT GCGGTGGATCCACTGCGAGCGGCGGCAGCGGCATGTGCAGTGGCGGCGGT GGAGCTGGCGGAGGCAGAACCCGGTGATGGTGGCGTCGAGCAGCCAGGAT GGGCAAGGAGCGACGGCGATCGGGGGCTGGCGGCGACCAGCGGTGACGGG TTGCTGTGTTGGTAGTGGGGGCAGCGCAGCGGCGGCGGTGGCCGCAGCGC AACGGCCGCGGCGGCGGCGGTGACCGCGGCGGCGGCGATGCGACGGCGAC AGCGACGGCGCGGTGCCACTGCGGCGGCGGGCTGCCGTAATCACATTTCT TAACCGGAAGGGAGTGGGGGAGAAGAGAACGAGGTATTAGGGCAGCGTAT TAAATGCAGAATCCCCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7558:331..1099-

>mRNA_P-wetherbeei_contig7558.1.1 ID=mRNA_P-wetherbeei_contig7558.1.1|Name=mRNA_P-wetherbeei_contig7558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig7558:331..1099- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGCACGCCCGTCTGGAAGGGCCTGCACGGCGACCTCTGCGTGCT
GTGCCGTGAGGGCGGGACGCTGCTGTGCTGCGACTATTGTCCGATGGCCT
ACCATATGCAGCCGTGTCTCGGGCTGATGTTTGAGCCCAACGGGCTGTGG
GCATGCCCGGGGTGCCTGCGCCGCGTGGCGGAGGCCCGCCTCGGCGGCGG
CCGCAGTGGCGGTGGCGCCGGCGACAAGGCTTCGTAA
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