mRNA_P-wetherbeei_contig7557.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7557.1.1
Unique NamemRNA_P-wetherbeei_contig7557.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7557.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7557contigP-wetherbeei_contig7557:1564..2293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size730
Hectar predicted targeting categoryother localisation
Exons1
Cds size570
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.1401656-UTR-P-wetherbeei_contig7557:1563..15741683186988.1401656-UTR-P-wetherbeei_contig7557:1563..1574Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7557 1564..1574 +
1683186988.159691-UTR-P-wetherbeei_contig7557:2144..22931683186988.159691-UTR-P-wetherbeei_contig7557:2144..2293Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7557 2145..2293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.150115-CDS-P-wetherbeei_contig7557:1574..21441683186988.150115-CDS-P-wetherbeei_contig7557:1574..2144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7557 1575..2144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7557.1.1prot_P-wetherbeei_contig7557.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7557 1575..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7557.1.1

>prot_P-wetherbeei_contig7557.1.1 ID=prot_P-wetherbeei_contig7557.1.1|Name=mRNA_P-wetherbeei_contig7557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
MKRKAPLPAGAEARKRCFPGFPLSDLPLLCRTFIQAQAITRRCSLTRVQA
CLRGCPCGRCGEQRILQWGNIGELREDADQSQRRHGEVRRVPHRDHQREH
MPQMKGYATNGLETALQSEALAESQGGTLQRLSPRDPPCHSMCGDLLTAE
AEYCREVHAKALAAMLRRSDLLAEVKVPMRAALWAARRA*
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mRNA from alignment at P-wetherbeei_contig7557:1564..2293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7557.1.1 ID=mRNA_P-wetherbeei_contig7557.1.1|Name=mRNA_P-wetherbeei_contig7557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=730bp|location=Sequence derived from alignment at P-wetherbeei_contig7557:1564..2293+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAGCAGCGCATGAAACGGAAGGCTCCCTTGCCTGCTGGTGCTGAGGCA
CGCAAACGTTGCTTCCCCGGTTTCCCTCTCTCCGATCTTCCTTTGCTCTG
CCGCACTTTTATTCAGGCTCAAGCCATCACTCGCCGCTGCTCGCTCACGC
GGGTGCAGGCATGCCTACGCGGCTGTCCGTGCGGGCGCTGCGGCGAACAA
AGGATCCTGCAATGGGGAAATATTGGGGAGCTTCGAGAAGACGCTGACCA
AAGTCAGAGACGTCACGGGGAAGTACGAAGAGTTCCGCATCGCGATCACC
AAAGAGAACATATGCCTCAAATGAAAGGATATGCGACTAACGGACTTGAA
ACAGCTTTACAAAGCGAAGCGCTCGCTGAGAGCCAAGGCGGAACTCTGCA
ACGCCTTTCGCCTCGAGATCCTCCATGCCACTCAATGTGCGGGGACTTAC
TGACCGCTGAGGCAGAGTACTGCCGAGAAGTGCATGCCAAAGCGCTCGCG
GCGATGCTACGACGGTCAGATCTCCTAGCCGAGGTCAAGGTGCCAATGCG
AGCAGCACTGTGGGCGGCGCGGCGCGCCTGAAGGATCCCAACTATCAAGA
GCTGCGCGACAATACCGTCAAATGAACGGGTTGGAAGATTGGCGAGATCG
GAGGCAAATGATTGCAGATCTACAACATCGGAGGGGAGGCGGCACTTGAC
CATGTTAACTAATGAAAGAATCATCACGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7557:1564..2293+

>mRNA_P-wetherbeei_contig7557.1.1 ID=mRNA_P-wetherbeei_contig7557.1.1|Name=mRNA_P-wetherbeei_contig7557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig7557:1564..2293+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGGAAGGCTCCCTTGCCTGCTGGTGCTGAGGCACGCAAACGTTG
CTTCCCCGGTTTCCCTCTCTCCGATCTTCCTTTGCTCTGCCGCACTTTTA
TTCAGGCTCAAGCCATCACTCGCCGCTGCTCGCTCACGCGGGTGCAGGCA
TGCCTACGCGGCTGTCCGTGCGGGCGCTGCGGCGAACAAAGGATCCTGCA
ATGGGGAAATATTGGGGAGCTTCGAGAAGACGCTGACCAAAGTCAGAGAC
GTCACGGGGAAGTACGAAGAGTTCCGCATCGCGATCACCAAAGAGAACAT
ATGCCTCAAATGAAAGGATATGCGACTAACGGACTTGAAACAGCTTTACA
AAGCGAAGCGCTCGCTGAGAGCCAAGGCGGAACTCTGCAACGCCTTTCGC
CTCGAGATCCTCCATGCCACTCAATGTGCGGGGACTTACTGACCGCTGAG
GCAGAGTACTGCCGAGAAGTGCATGCCAAAGCGCTCGCGGCGATGCTACG
ACGGTCAGATCTCCTAGCCGAGGTCAAGGTGCCAATGCGAGCAGCACTGT
GGGCGGCGCGGCGCGCCTGA
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