mRNA_P-wetherbeei_contig755.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig755.3.1
Unique NamemRNA_P-wetherbeei_contig755.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: D8LH69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH69_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.260e-34
Identity = 115/235 (48.94%), Postives = 142/235 (60.43%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAAAVITEYKXXXXXXXXXXXXXXXXEDSEDDEAALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALLNPK-ASAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYIK 729
            MTTAHRPTW  A A     GN++ GG  S   SA D  + T LKFR++GQ+SE ELR+R+++A +E  E  A  +K                    QLLL ++G+++   V       XXXXXXXXXXXXXX        AL +EL  I+ ER+         XXXXXXX     AMTGN LL    +S+Q+KR+WNDDVVFK QAR + E KKRF+NDTIRNDFHRRFL+KYIK
Sbjct:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 235          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: A0A448ZGD8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGD8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.790e-28
Identity = 114/261 (43.68%), Postives = 143/261 (54.79%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQ--DSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAAAVITEYKXXXXXXXXXXXXXXXXEDSEDD----------------------EAALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALL---NPKASAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYIK 729
            MTTAHRPTW AA  G  S+G + +GGA S   S  D  AHTKLKFR+  Q  D ++ L+   LK  LE  E EA +K                   G   LL Q  E+D  A+  +Y          XXXXXXX                            EAAL  ELA I+AER+ AK+KE A XXXXXXXX    A+ GN LL   N   + ++KR+WN+DVVF++QA+G+ E KKRFINDT+RNDFH+RFL+K+I+
Sbjct:    1 MTTAHRPTWKAAV-GKASEGGWGSGGAGSQGLSVLDMPAHTKLKFRKGDQVVDRQKALKESLLK--LETAEKEATKK-----LLKRPAVDEKVEEEGRLKLLKQTAEVDERAIQAKYNDADALSSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAALYAELAKIRAEREAAKQKEEAEXXXXXXXXLEEAALLGNPLLASGNDHDTGRLKRRWNEDVVFRNQAKGEPEIKKRFINDTVRNDFHKRFLNKFIR 253          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: B8BTD5_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTD5_THAPS)

HSP 1 Score: 117 bits (292), Expect = 1.830e-27
Identity = 115/244 (47.13%), Postives = 142/244 (58.20%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAAAVITEYKXXXXXXXXXXXXXXXXEDSEDDEA---ALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALLNPKAS-------AQMKRQWNDDVVFKSQARGQSEP-KKRFINDTIRNDFHRRFLSKYI 726
            MTTAHRPTW AA  G   +G +AAGGA S   SAKD  +HTKLKFR+ G +  + L + +L   L+  EAE                       G QLLL Q  ++D   +   Y  XXXXXXXXXXXXXXX           AL+ ELA I+AER  AK KE A XXXXXX      A+TGN LL             ++KR+WNDDVVF++QA+ + +  KKRFINDT+RNDFH+RFL+K+I
Sbjct:    1 MTTAHRPTWKAAV-GRAQEGGWAAGGALSTNSSAKDLASHTKLKFRKVGDELREALLQESL---LKMEEAER-----SADLTAKRYNGEEEEERGRQLLLKQTADVDEGEIKKRYDDXXXXXXXXXXXXXXXXXXXXXXXXXXALQAELAKIRAERAAAKAKEDAEXXXXXXAQMEEAALTGNPLLXXXXXXXXXXXXGRIKRRWNDDVVFRNQAKNEPDQNKKRFINDTVRNDFHKRFLNKFI 235          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: A0A087SM42_AUXPR (CWC15-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SM42_AUXPR)

HSP 1 Score: 116 bits (291), Expect = 2.740e-27
Identity = 103/253 (40.71%), Postives = 130/253 (51.38%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGG----APSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXG-------PQLLLTQEGEIDAAAVITEYKXXXXXXXXXXXXXXXXEDSEDDEAALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALLNPK--------ASAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYIK 729
            MTTAHRPTW  A      KG    GG    APS Q+S KD  + T+LKFRQ GQ   +EL +++L+A LE+ E     K                           P+ L+ +  + D         XXXXXXXXX          +DDEA L  ELA IKAER E   ++A  XX           + GN LL  K        AS  +KRQW+DDVVF++Q RG+ + +KRFINDTIRNDFH+RFL KY++
Sbjct:    1 MTTAHRPTWAPA------KGGEEQGGMRIFAPSKQQSVKDLPSQTRLKFRQDGQSKAEELSQKDLRAELEEKERAHYLKNKIHTFEEEREDDLRLLQSASHAREEPPRTLIPKAADADXXXXXXXXXXXXXXXXXXV---------QDDEAELLAELARIKAERAEEAARKAXXXXAAAESVNQAELLRGNPLLKEKLQAAAGGDASFAIKRQWDDDVVFRNQTRGEPKAQKRFINDTIRNDFHKRFLEKYVR 238          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: A0A2K1KJS5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KJS5_PHYPA)

HSP 1 Score: 115 bits (288), Expect = 5.870e-27
Identity = 91/242 (37.60%), Postives = 120/242 (49.59%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAAAVITEYKXXXXXXXXXXXXXXXXE---DSED-----DEAALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALLNPKASAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYIK 729
            MTTA RPTW  A  G    G    G  PS + S++D  +HT+LK R+ GQD+ +E+RRR+L+A LE  E      K                        +  G +D +   TE +                E   DS++     D A L  EL  IK ER E K ++                + GN LLN   S  +KR+W+DDVVFK+QARG+ +P KRFINDTIRNDFHR+FL+KY+K
Sbjct:    1 MTTAARPTWAPAKGGSEQGGVRMFG--PSQKFSSRDLASHTQLKLRKDGQDTTEEIRRRDLRAELEDREHRHFSSKEKSYDDRDRRKG------------STAGYLDGSKRDTEERSERAAIKNVDADDSDVEVPSDSDEXXXXXDTAELLAELERIKKERAEEKLRKERQLQEEEMKAKESELIRGNPLLNSTGSFAVKRRWDDDVVFKNQARGEPKPVKRFINDTIRNDFHRKFLNKYMK 228          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: A0A024U4X4_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4X4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.020e-27
Identity = 108/261 (41.38%), Postives = 136/261 (52.11%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAAAVITEYKXXXXXXXXXXXXXXXXEDSEDDE-----------------------AALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALL-----NPKASAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYI 726
            MTTA RPTW AA  G  ++G + +GG  S+Q SA+D  AH KLK RQ GQ + +EL  R+LK+ L + E + + +K       XXXXXXXXXXX   LL   E E  A  + ++Y                 +D++DD                        A L REL  IK ER+E + K+ A              + GN L      NP  SA +KR+WNDDVVFK+Q R + E KKRFINDTIRNDFHRRFL  YI
Sbjct:    1 MTTAARPTWNAAV-GQKNEGGWNSGGQVSMQFSARDLPAHKKLKTRQMGQGTVEELEGRDLKSELAERERQYQAEKDKVVDVAXXXXXXXXXXXXX-LLKGDEWEDRAKEIQSQY-----------------DDADDDTRKDDSGXXXXXXXXXXXXXXXXXAELMRELEKIKKEREEERLKKEAADRDAEESLRKEEILLGNPLTSQQSKNPTGSATIKRKWNDDVVFKNQTRHEPETKKRFINDTIRNDFHRRFLKTYI 242          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: A0A2D4BX11_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX11_PYTIN)

HSP 1 Score: 115 bits (287), Expect = 1.120e-26
Identity = 113/243 (46.50%), Postives = 138/243 (56.79%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAA-----AVITEYKXXXXXXXXXXXXXXXXEDSEDD--EAALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALL---NPKASAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYI 726
            MTTAHRPTW AA  G  S+G +  GG  S Q SA+D   HTKLK RQ GQ +  E+  R+L+A LE  E +  ++K                    ++LL  + E DA      +V ++Y      XXXXXXXXXXX        EA L REL  IK E           XXXXXXXXX    + GN L       A+A+MKR+WNDDVVFK+Q+R + E KKRFINDTIRNDFHRRFL+KY+
Sbjct:    1 MTTAHRPTWHAAV-GQKSEGGWQTGGQVSQQFSARDLPGHTKLKLRQVGQGTANEVEARDLRAELEGREQQYEEEKSKNSDSVQARLRRLEE--NKKILLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXEAELMRELEKIKKEXXXXXXXXXXXXXXXXXXXXREEILQGNPLTAAQTASANAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYV 240          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: A0A1Q3AVR9_CEPFO (Cwf_Cwc_15 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AVR9_CEPFO)

HSP 1 Score: 113 bits (283), Expect = 3.190e-26
Identity = 113/244 (46.31%), Postives = 136/244 (55.74%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQ----------EGEIDAAAVITEYKXXXXXXXXXXXXXXXXEDSEDDEAALRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALLNPKASAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYIK 729
            MTTA RPTW  A  G    G    G  PS + S++D  AHT LK R+ GQD++ EL++RNL+  LE+ E      +                  G  LLL            +  +DA     E K   XXXXXXXXXXXX E       AL  EL  IK ER E K +    XXXXXXXXXX   M GN LLN   S  +KR+W+DDVVFK+QARG+++  KRFINDTIRNDFHR+FL KY+K
Sbjct:    1 MTTAARPTWAPAKGGNEQGGTRIFG--PSQKYSSRDLAAHTNLKPRKEGQDTQDELQKRNLREELEERE------RRHFSSKSKSYSDDRDRRKGSDLLLEGTKRDTEDRIVQRSVDADDSDVEVKSDDXXXXXXXXXXXXTE-------ALLAELEQIKKERAEEKMRXXXXXXXXXXXXXXAEVMRGNPLLNNPTSFNVKRRWDDDVVFKNQARGENKIAKRFINDTIRNDFHRKFLQKYMK 229          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: D0NV69_PHYIT (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=D0NV69_PHYIT)

HSP 1 Score: 113 bits (283), Expect = 4.050e-26
Identity = 100/245 (40.82%), Postives = 129/245 (52.65%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQ----WEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAAA-----VITEYKXXXXXXXXXXXXXXXXEDSEDDEAA-LRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALLNPKA--SAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYI 726
            MTTAHRPTW AA  G  ++G + AGG  S Q SA+D  AH +LK RQ GQ +  E+   +L+  LE+    +E E  +KK                    ++LL  + E DA       V ++Y           XXXXXX          L REL  IK ER+E + ++                + GN L   +A  SA+MKR+WNDDVVFK+Q+R + E KKRFINDTIRNDFHRRFL+KYI
Sbjct:    1 MTTAHRPTWHAAV-GQSNEGGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEVEKGRKKDTAQDKLRRLEE------NKKILLLGDAEADAKESQLKEVASKYNDADDGAGSEAXXXXXXXXXXXXXXXELMRELEKIKQEREEERLRKEEEARKTVELQSREEILQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238          
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Match: K3WMS3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMS3_GLOUD)

HSP 1 Score: 113 bits (283), Expect = 4.050e-26
Identity = 99/252 (39.29%), Postives = 125/252 (49.60%), Query Frame = 1
Query:   28 MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQDSEQELRRRNLKATLEQWEAEARQKKXXXXXXXXXXXXXXXXXXGPQLLLTQEGEIDAA-----AVITEYKXXXXXXXXXXXXXXXXEDSEDDEAA------------LRRELAIIKAERDEAKKKEAAIXXXXXXXXXXXXAMTGNALLNPKA--SAQMKRQWNDDVVFKSQARGQSEPKKRFINDTIRNDFHRRFLSKYI 726
            MTTAHRPTW AA  G  ++G + AGGA S Q SA+D  AH KLK+RQ GQ +  E+   +L+A LE  E +  ++K                    +LLL  + E DA      ++ ++Y                  DS+D                L REL  IK             XXX          + GN LL   +  SA+MKR+WNDDVVFK+Q+R + E KKRFINDTIRNDFHRRFLSKYI
Sbjct:    1 MTTAHRPTWHAAV-GQANEGGWQAGGALSEQFSARDLPAHKKLKYRQVGQGTANEVELLDLRAELEGKEEKYEEEKGKKKDTALDKLRRLEE--NKKLLLLGDSEADARESQLKSIASKYDDADEIG-----------DSDDSSXXXXXXXXXXXXXXLMRELEKIKRXXXXXXXXXXXXXXXASEQESRVEILQGNPLLQQSSGGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLSKYI 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig755.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH69_ECTSI1.260e-3448.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A448ZGD8_9STRA3.790e-2843.68Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8BTD5_THAPS1.830e-2747.13Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A087SM42_AUXPR2.740e-2740.71CWC15-like protein n=2 Tax=Auxenochlorella prototh... [more]
A0A2K1KJS5_PHYPA5.870e-2737.60Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A024U4X4_9STRA6.020e-2741.38Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A2D4BX11_PYTIN1.120e-2646.50Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1Q3AVR9_CEPFO3.190e-2646.31Cwf_Cwc_15 domain-containing protein n=1 Tax=Cepha... [more]
D0NV69_PHYIT4.050e-2640.82Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]
K3WMS3_GLOUD4.050e-2639.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig755contigP-wetherbeei_contig755:2491..3493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LH69
Preferred nameCWC15
PFAMsCwf_Cwc_15
Model size1003
Max annot lvl2759|Eukaryota
KEGG koko:K09191,ko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons1
Evalue6.9e-37
EggNOG OGsKOG3228@1|root,KOG3228@2759|Eukaryota
Ec32 ortholog descriptionPre-mRNA-splicing factor Cwf15/Cwc15
Ec32 orthologEc-24_000770.1
DescriptionmRNA splicing, via spliceosome
Cds size705
COG categoryA
BRITEko00000,ko00001,ko00002,ko03000,ko03021,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186987.7776299-UTR-P-wetherbeei_contig755:2490..25171683186987.7776299-UTR-P-wetherbeei_contig755:2490..2517Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig755 2491..2517 +
1683186987.8057208-UTR-P-wetherbeei_contig755:3222..34931683186987.8057208-UTR-P-wetherbeei_contig755:3222..3493Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig755 3223..3493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186987.7929912-CDS-P-wetherbeei_contig755:2517..32221683186987.7929912-CDS-P-wetherbeei_contig755:2517..3222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig755 2518..3222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig755.3.1prot_P-wetherbeei_contig755.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig755 2518..3222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig755.3.1

>prot_P-wetherbeei_contig755.3.1 ID=prot_P-wetherbeei_contig755.3.1|Name=mRNA_P-wetherbeei_contig755.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
MTTAHRPTWVAATAGPGSKGNYAAGGAPSLQRSAKDATAHTKLKFRQSGQ
DSEQELRRRNLKATLEQWEAEARQKKDGGGSGSSGAGARADDADGPQLLL
TQEGEIDAAAVITEYKDKDDSDSGDSDLDSDGEDSEDDEAALRRELAIIK
AERDEAKKKEAAIEAERAANAAREAAMTGNALLNPKASAQMKRQWNDDVV
FKSQARGQSEPKKRFINDTIRNDFHRRFLSKYIK*
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mRNA from alignment at P-wetherbeei_contig755:2491..3493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig755.3.1 ID=mRNA_P-wetherbeei_contig755.3.1|Name=mRNA_P-wetherbeei_contig755.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1003bp|location=Sequence derived from alignment at P-wetherbeei_contig755:2491..3493+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCAAGAACGCCAGAGAAGAGCAACCATGACCACCGCTCACCGACCGAC ATGGGTGGCCGCGACCGCCGGGCCAGGTTCGAAGGGCAATTACGCTGCGG GCGGCGCCCCGAGTCTACAGCGATCTGCCAAGGATGCGACGGCGCACACC AAGCTCAAGTTCCGGCAGTCTGGGCAGGACTCAGAGCAGGAGCTGCGACG ACGGAATCTGAAGGCGACACTGGAGCAGTGGGAGGCGGAGGCGCGCCAGA AGAAGGACGGCGGGGGCAGCGGCAGCAGCGGCGCAGGCGCGAGAGCAGAC GATGCCGACGGGCCGCAGTTATTGCTGACGCAGGAAGGCGAGATCGACGC TGCGGCGGTCATCACGGAGTACAAGGACAAGGACGACAGCGATAGCGGCG ACAGCGATTTAGACAGCGACGGCGAAGACTCAGAGGACGACGAGGCGGCG CTGCGGCGGGAGCTCGCCATCATCAAAGCGGAACGCGACGAGGCGAAAAA GAAGGAGGCTGCCATCGAAGCGGAGCGCGCCGCCAACGCAGCGCGCGAGG CGGCCATGACGGGCAACGCGTTGCTGAACCCGAAGGCGAGCGCGCAGATG AAGCGCCAGTGGAACGACGACGTCGTCTTCAAGTCGCAGGCGCGCGGCCA GTCGGAGCCCAAGAAGCGTTTCATCAACGACACCATCCGGAACGACTTCC ACCGGCGGTTCCTCTCCAAATACATCAAGTAGTTTGGGAGGAAAAGAAAA GCGTATCGAAGGAATAGGGAAAAAGCACGGCAACAGCCGCTGCGGTGTTG GAGGGATGCACTGTTTATTTCGCATGGGGTTGGCTCGGTCATAGCATTTT TATGGCGGGGCTCCCGCGGCCCCCACTCATCACCGCGAGAGCATCAAATA AGGAAAGCATCCCCAAACGAACAAACTGAGGAAATGGCGCCTCCTTTGCC CTGATGCGATTATAGAAGCGAGAAGTAACGTGAAAACGATGGGATATGAC GAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig755:2491..3493+

>mRNA_P-wetherbeei_contig755.3.1 ID=mRNA_P-wetherbeei_contig755.3.1|Name=mRNA_P-wetherbeei_contig755.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig755:2491..3493+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCGCTCACCGACCGACATGGGTGGCCGCGACCGCCGGGCCAGG
TTCGAAGGGCAATTACGCTGCGGGCGGCGCCCCGAGTCTACAGCGATCTG
CCAAGGATGCGACGGCGCACACCAAGCTCAAGTTCCGGCAGTCTGGGCAG
GACTCAGAGCAGGAGCTGCGACGACGGAATCTGAAGGCGACACTGGAGCA
GTGGGAGGCGGAGGCGCGCCAGAAGAAGGACGGCGGGGGCAGCGGCAGCA
GCGGCGCAGGCGCGAGAGCAGACGATGCCGACGGGCCGCAGTTATTGCTG
ACGCAGGAAGGCGAGATCGACGCTGCGGCGGTCATCACGGAGTACAAGGA
CAAGGACGACAGCGATAGCGGCGACAGCGATTTAGACAGCGACGGCGAAG
ACTCAGAGGACGACGAGGCGGCGCTGCGGCGGGAGCTCGCCATCATCAAA
GCGGAACGCGACGAGGCGAAAAAGAAGGAGGCTGCCATCGAAGCGGAGCG
CGCCGCCAACGCAGCGCGCGAGGCGGCCATGACGGGCAACGCGTTGCTGA
ACCCGAAGGCGAGCGCGCAGATGAAGCGCCAGTGGAACGACGACGTCGTC
TTCAAGTCGCAGGCGCGCGGCCAGTCGGAGCCCAAGAAGCGTTTCATCAA
CGACACCATCCGGAACGACTTCCACCGGCGGTTCCTCTCCAAATACATCA
AGTAG
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