mRNA_P-wetherbeei_contig754.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig754.6.1
Unique NamemRNA_P-wetherbeei_contig754.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A6H5JR21_9PHAE (Lipoyl-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR21_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.460e-22
Identity = 66/162 (40.74%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTP------EPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPATTERTPLIKFRGKR--LPPREAQVSPDSSDEAHQYSPGALEFDQ 462
            LGDSISEG +V W K VGD V  D+V+AVVETDKVSVD+RS+  G + + FA +D+VV VG  LCT+DG+  +   A         + ++ P   +  +            A   AP      PLIKF GKR  L  ++ +   D     H++SPGAL+F Q
Sbjct:   98 LGDSISEGTVVEWRKSVGDEVSEDEVIAVVETDKVSVDVRSTHVGVVVKLFAAVDDVVEVGKPLCTIDGDEASVVKARVQAQQDEEDANAPPPELKKPSLEDAMAEAFMAGADFVAPRKKSHKPLIKFVGKRALLTEKKDKKEKDGLPARHRHSPGALDFSQ 259          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A1V9YWQ2_9STRA (Lipoyl-binding domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWQ2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.380e-18
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPA-----TTERTPLIKFRGKR 378
            +GDSISEG +V   K++G++V VD+VV V+ETDKVSVD+ S   GTL ++F  +D+ V VG  L  +DG+  A  T+ TP P++ PVA              XXX   KAPA     T  R P IKF GKR
Sbjct:   35 MGDSISEGTVVDLRKQIGEHVNVDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKATVTSSTPAPAAAPVA--------------XXXXXXKAPAAAAHHTGARVPRIKFLGKR 151          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A835ZF23_9STRA (Single hybrid motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF23_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.850e-18
Identity = 64/139 (46.04%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPATTERTPLIKFRGKRLPPREAQVSPDSS 417
            LGDSISEG +V+W K VGD V VDDVVAVVETDKVSV+IRS  +G + +  A +D+ V VGA LCT+D    AA  A  P           E  A L         +E+        PLIKF GKR   +E Q +P++S
Sbjct:   79 LGDSISEGTVVQWLKSVGDLVAVDDVVAVVETDKVSVEIRSPHRGVITKLHAAVDDQVQVGAPLCTLDEA--AAPKAEAPXXXXXXXXXRPEDDATLAAHISGAVLEEQP---RRHVPLIKFVGKRS--KEKQEAPEAS 210          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A7S2V4U3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4U3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.810e-18
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNA-----ATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAP---ATTERTPLIKFRGKRLPPREAQ 399
            +GDSI+EG ++ W ++VG+ VE D VVAV+ETDKVSVDIRS   G + ++   +DE V VGA L  +D E +      A TA   E  S P+  +AE AA          AQ+  P   A  +R PLIKFRGKR  P + Q
Sbjct:   66 MGDSITEGTLIEWKRQVGEVVEADSVVAVIETDKVSVDIRSPSPGVITKQMCGVDETVVVGADLLELDTEASVSASFPAPTAVQQEEGSLPIE-QAENAATS--------AQDAKPQPLAIRKRVPLIKFRGKRPRPGQHQ 197          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A7S3PUW9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUW9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.560e-17
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPATTERTPLIKFRGK 375
            +GDSI+EG IV WA +VG  V+VDDV+A+VETDKV++DI++   G + E FA++D+ V VGA L  +D E  A T  GT  P +  V    ++A +           E+A +   R P I F GK
Sbjct:   50 MGDSITEGTIVEWAAQVGQAVKVDDVIALVETDKVTIDIKAQIDGVITEHFADVDDNVEVGANLYQIDTEAEA-TAPGTSAPEASSVQTNTKSAEEPKEVSNVAATGEEAQSGV-RVPSIHFLGK 172          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A8K1C888_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C888_PYTOL)

HSP 1 Score: 85.1 bits (209), Expect = 2.370e-16
Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAA 285
            +GDSISEG +V W K  GD V+ DDVV V+ETDKVSVD+R+ F G L E+ A IDE V VGA L +V  +   A  A TP  +  P A  + AAA
Sbjct:  146 MGDSISEGTVVEWLKAPGDFVQADDVVVVLETDKVSVDVRAPFAGVLGEQLAKIDESVLVGAPLFSVTKQEGGAAPASTPVAAPTPAAPASSAAA 240          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A7S2MS94_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS94_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.320e-15
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPATTERTPLIKFRGK 375
            +GDSI+EG ++ W K VGD+V +DD++AV+ETDKVSVD+R++  G + E FA  D+ V VG  L  +D + + A    T  PS                      A+E   +++ R P IKF GK
Sbjct:   53 MGDSITEGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRIDVQSSDAMADETVSPSK-------------PTETMSATAEEPGHSSSTRVPSIKFLGK 164          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: F0WGD4_9STRA (Uncharacterized protein AlNc14C90G5666 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WGD4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.950e-15
Identity = 60/142 (42.25%), Postives = 79/142 (55.63%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPATTERTPLIKFRGKRLPPREAQVSPDSSDEA 426
            +GDSISEG +V   KE G++V+ D VVAV+ETDK+SVD+RS   GT+    AN+D+ V VG  L +VDG   +  +  T    S      A  +   XX     X Q  +PA+  RTPLI+F GKR   R   V    S+ A
Sbjct:    1 MGDSISEGTLVETLKEKGESVQEDQVVAVLETDKLSVDVRSPVAGTIVAYHANLDDSVKVGKPLFSVDGSQTSKESQDTSMEKS-----TASTSTPSXXSPDEDXTQATSPAS-RRTPLIQFLGKRTTERNVPVEKKESNAA 136          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A485K9E9_9STRA (Aste57867_2807 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9E9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.440e-15
Identity = 66/128 (51.56%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPATTE--RTPLIKFRGKR 378
            +GDSISEG +V   K+VG+ V+VD+VV V+ETDKVSVD+ S   GTL +  A++DE V VG  L  VDG+  AAT   TP P+         AAA  XXXXXXXX    A A +   R P IKF GKR
Sbjct:   32 MGDSISEGTVVEIKKQVGEAVQVDEVVMVLETDKVSVDVMSPMAGTLVKTLASLDEDVQVGKDLFVVDGD-VAATVVSTPAPA---------AAAPXXXXXXXXXXXXXAAAASHHHRVPRIKFLGKR 149          
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Match: A0A1V9ZZF4_9STRA (Lipoyl-binding domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZF4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.940e-15
Identity = 63/126 (50.00%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEKFANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLXXXXXXXXAQEKAPATTERTPLIKFRGKR 378
            +GDSISEG +V   KE+G +V VD+VV V+ETDKVSVD+ S   GTL + F  +D  V VG  L  VDG+  AAT A TP          A      XXXXXXX  QEK    + R P IKF GKR
Sbjct:   30 MGDSISEGTVVEIKKEIGQHVNVDEVVMVLETDKVSVDVMSPVAGTLVKHFVELDMDVQVGRDLFVVDGD-VAATVAATPV---------ATTPXXXXXXXXXXVKQEKTQTASVRVPRIKFLGKR 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig754.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR21_9PHAE2.460e-2240.74Lipoyl-binding domain-containing protein n=2 Tax=E... [more]
A0A1V9YWQ2_9STRA1.380e-1845.80Lipoyl-binding domain-containing protein n=1 Tax=A... [more]
A0A835ZF23_9STRA3.850e-1846.04Single hybrid motif-containing protein n=1 Tax=Tri... [more]
A0A7S2V4U3_9STRA9.810e-1844.68Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3PUW9_9STRA4.560e-1742.40Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8K1C888_PYTOL2.370e-1652.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2MS94_9STRA1.320e-1538.40Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0WGD4_9STRA1.950e-1542.25Uncharacterized protein AlNc14C90G5666 n=1 Tax=Alb... [more]
A0A485K9E9_9STRA2.440e-1551.56Aste57867_2807 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZZF4_9STRA2.940e-1550.00Lipoyl-binding domain-containing protein n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig754contigP-wetherbeei_contig754:7541..8853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWF4
PFAMsBiotin_lipoyl,S36_mt
Model size462
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.73e-23
EggNOG OGsCOG0508@1|root,KOG0559@2759|Eukaryota
Ec32 ortholog descriptionBiotin/lipoyl attachment
Ec32 orthologEc-07_007300.1
Descriptiondihydrolipoyllysine-residue succinyltransferase activity
Cds size462
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186987.3150473-CDS-P-wetherbeei_contig754:7540..75881683186987.3150473-CDS-P-wetherbeei_contig754:7540..7588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig754 7541..7588 +
1683186987.3418167-CDS-P-wetherbeei_contig754:7855..79091683186987.3418167-CDS-P-wetherbeei_contig754:7855..7909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig754 7856..7909 +
1683186987.3534477-CDS-P-wetherbeei_contig754:8224..85371683186987.3534477-CDS-P-wetherbeei_contig754:8224..8537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig754 8225..8537 +
1683186987.368424-CDS-P-wetherbeei_contig754:8806..88531683186987.368424-CDS-P-wetherbeei_contig754:8806..8853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig754 8807..8853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig754.6.1prot_P-wetherbeei_contig754.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig754 7541..8853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig754.6.1

>prot_P-wetherbeei_contig754.6.1 ID=prot_P-wetherbeei_contig754.6.1|Name=mRNA_P-wetherbeei_contig754.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
LGDSISEGVIVRWAKEVGDNVEVDDVVAVVETDKVSVDIRSSFKGTLAEK
FANIDEVVAVGARLCTVDGEGNAATTAGTPEPSSGPVAAEAEAAAKLAAA
AAAPPAQEKAPATTERTPLIKFRGKRLPPREAQVSPDSSDEAHQYSPGAL
EFDQ
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mRNA from alignment at P-wetherbeei_contig754:7541..8853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig754.6.1 ID=mRNA_P-wetherbeei_contig754.6.1|Name=mRNA_P-wetherbeei_contig754.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1313bp|location=Sequence derived from alignment at P-wetherbeei_contig754:7541..8853+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGGCGATTCGATTTCTGAGGGAGTCATTGTCCGGTGGGCAAAGGAGGT GAGCAAGAGAAGCTATCTTTTAAGCTATCCTATTTGGCGTGATATTGGAT GAGCAATGATGAGGTGCCCGATACGAACAATGCTTCAAAACTGGGCCTCC ACGCTATTTTGAAAAAGAGAATGGGGAGCATCCTCGTTGAGAACGACGCG GCCGTTTTTGCCTTGGCGTGTCAATCTGTTGATGCATTTGAAGAGGTGAC ATATTTTCTAGCCTAACGATTCTTAAACCCTGGTCACACCGTTGCGTTTT GTGCCGCTACTGCAGGTTGGCGACAACGTGGAGGTGGACGACGTTGTTGC TGTCGTAGAAACCGACAAGGTAAGGGAAGAAAGGAGAGGAGACCCGTGAC CGATGGTTCGTTTCCTGCTTCTCAGCCCTTTGCGAGTTTGTGTTTGTCTT CCCCACCAAATTATCCTGGCTCGGCGTTGTAACGGCGGCGGCGGCGGCGG CTCGGCGGTGGCGGCTCGGCGATGGCGGTGGCTACAGCGGCGGCGTCGAC GGCGATGGTGGCATAGCCGCTACCTTCTCGCGCGGCTGCACCGGTTCTTT GTCTCTGTGGGTCGTAAAACCAAAAACCGAAAACTTATCTTCAAACGTTC TTGCCGGAACTGCTGCGCTGACCCCACCAACCAGGTCAGCGTGGACATCC GGTCGTCCTTCAAGGGCACGCTGGCCGAAAAGTTCGCCAACATTGACGAA GTCGTGGCCGTCGGCGCCCGCCTCTGCACCGTCGACGGCGAGGGAAATGC CGCGACGACGGCAGGCACCCCAGAGCCGAGCTCCGGGCCCGTCGCCGCCG AGGCAGAGGCGGCGGCCAAGCTGGCGGCGGCGGCGGCGGCGCCTCCTGCA CAGGAAAAGGCGCCCGCGACGACAGAGCGCACACCGCTTATCAAGTTCAG GGGCAAGCGGCTGCCGCCGCGCGAGGCACAGGTGAGCCCAGACAGTTGTA CTTGCGCAACCCGCTGTGATCCGTCGAAGTCTTGGACTTTGTGGCTGAAT AAGCTTGCCTCTCGTTGCCAGTTGAACTGTTCTTCTTCCTCTCACCTTGC TGGATTGAGAAATTGGGAGTTTAATGCGTGTTACTCACTGAGTGCATCGC TTTGACTCACTCACTTTCATCCCGCTAATTCCGACTTTGCCCATCTCGCT CCTTCCTGCGCTCTGACACGTCATCGACGCGGCAGCTCGCCATGGCGAAC CGGGCGCCGGCGGAAGCCGATGAAGCGCATCAGTACTCCCCGGGGGCGCT CGAGTTCGACCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig754:7541..8853+

>mRNA_P-wetherbeei_contig754.6.1 ID=mRNA_P-wetherbeei_contig754.6.1|Name=mRNA_P-wetherbeei_contig754.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig754:7541..8853+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGGCGATTCGATTTCTGAGGGAGTCATTGTCCGGTGGGCAAAGGAGGT
TGGCGACAACGTGGAGGTGGACGACGTTGTTGCTGTCGTAGAAACCGACA
AGGTCAGCGTGGACATCCGGTCGTCCTTCAAGGGCACGCTGGCCGAAAAG
TTCGCCAACATTGACGAAGTCGTGGCCGTCGGCGCCCGCCTCTGCACCGT
CGACGGCGAGGGAAATGCCGCGACGACGGCAGGCACCCCAGAGCCGAGCT
CCGGGCCCGTCGCCGCCGAGGCAGAGGCGGCGGCCAAGCTGGCGGCGGCG
GCGGCGGCGCCTCCTGCACAGGAAAAGGCGCCCGCGACGACAGAGCGCAC
ACCGCTTATCAAGTTCAGGGGCAAGCGGCTGCCGCCGCGCGAGGCACAGG
TGAGCCCAGACAGTTCCGATGAAGCGCATCAGTACTCCCCGGGGGCGCTC
GAGTTCGACCAG
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