mRNA_P-wetherbeei_contig7531.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7531.1.1
Unique NamemRNA_P-wetherbeei_contig7531.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: A0A8J2WRH3_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WRH3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.450e-21
Identity = 58/138 (42.03%), Postives = 80/138 (57.97%), Query Frame = 1
Query:   16 GQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSSSYDSARFIEELRKRGLNKRTGNFDWVRYGRAVGGLFRPVPAISFMLGPLDKPVKAAK 429
            GQTEEERR +R+EQR+L +RI E    +  ++SD F N  + N+ +F KVRY RE V D   + GLA  A  ++GA++ S     A+ I +  K   +   G  DW   GR   GLFR  P ++F  GPL++PVK  K
Sbjct:   44 GQTEEERRILRQEQRNLQDRIGERRAAMCALDSDEFKNQRAANNGLFKKVRYNREMVNDGDIMVGLAECAVARAGALAKSVKQYGAKDICDALKESYSNSRGEMDWAALGRDGAGLFRAPPELNFFCGPLERPVKERK 181          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: A0A6H5JT36_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT36_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.510e-17
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 LMQDSGQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSS-SYDSARFIEELRKR-GLNKRTGN-----FDWVRYGRAVGGLFRPVP-AISFMLGPLDKPVKAAK 429
            +M +SGQT EERR++R +QR L  +I+E   +I D+N D    LT EN + F + ++ REA  D +N+K +A ++  Q+  +  SS   D   F++ ++K  G  K         F+W ++G  V  +F   P    FM+GPLDKP K  K
Sbjct:   30 VMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKQFQQTKFPREAANDAENLKLIAGSSTGQASQLGNSSVGIDGDAFLDSIKKHFGRTKGDDEQGVQTFNWAKWGSNVSMVFLAAPEGGGFMMGPLDKPAKERK 180          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.720e-16
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 LMQDSGQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSS-SYDSARFIEELRKR-GLNKRTGN-----FDWVRYGRAVGGLFRPVP-AISFMLGPLDKPVKAAK 429
            +M +SGQT EERR++R +QR L  +I+E   +I D+N D    LT EN + F + ++ REA  D +N+K +A  +A Q+  +  SS   D   F++ ++K  G  K         F+W ++G  V  ++   P    FM+GPLDKPVK  K
Sbjct:  129 VMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKHFKQTKFPREAANDAENLKLIAVGSAGQACQLGNSSVGIDGDAFLDSIKKHFGRTKGDDEQGVKTFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPVKERK 279          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: A0A0P1AQG7_PLAHL (Non-structural maintenance of chromosomes element 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQG7_PLAHL)

HSP 1 Score: 77.4 bits (189), Expect = 5.480e-14
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 LMQDSGQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVS--SSYDSARFIEELRKR-GLNKRTGNFDWVRYGRAVGGLFRPVPAISFMLGPLD 408
             +++S  +E++RR +R ++R+L++ I ENAH++A ++SD F   T E  +++  V Y REA  D  N+  L    AKQS A+  S  + YD+   I   +    +  + G FDW   G A G  FR VP   F+ G +D
Sbjct:   31 FLENSQLSEKDRRHVRYKERELLQSIKENAHDLAKLSSDQFHTHTQELDQMYDSVCYPREANLDASNLDELNVAVAKQSEALGSSDLTKYDTTDLIRAAQNVCTIESQNGEFDWNTLGNAAGACFRSVPESCFLFGLMD 169          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: A0A6G0W726_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W726_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.570e-14
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 LMQDSGQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVS--SSYDSARFIEELRKR-GLNKRTGNFDWVRYGRAVGGLFRPVPAISFMLGPLD 408
            LM DS  TEEERRQ+R  +R++++ + E + E + + S  F     E   I++KV Y REA  D  N+   +N   KQ+G +S S  + +D    I   +++  ++     FDW R G AVG  F+   +I+FM G +D
Sbjct:   15 LMADSKITEEERRQVRCREREILQELKERSVEASQLTSTVFEEKARELDSIYSKVVYPREANLDATNLDEFSNLVVKQAGLMSASDLTKFDVGDLINTAKEKCTMDSNEAVFDWDRLGSAVGACFQSAVSINFMFGSMD 153          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: A0A1Z5KLL0_FISSO (Non-structural maintenance of chromosomes element 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLL0_FISSO)

HSP 1 Score: 62.8 bits (151), Expect = 1.140e-8
Identity = 55/166 (33.13%), Postives = 76/166 (45.78%), Query Frame = 1
Query:   10 DSGQTEEERRQIRREQRDLMERIVENAHEIADINSD-------------TFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSSSYDSARFIEELRKRGLNKRTGN--FDWVRYGRAVGGLFRPVPA-ISFMLGPLDKPVKAAKPDKPKTVKKK 459
            D  QT+EERR +R EQR++   +   A+                     T   +   N+E+F  V Y RE V D  NV  LANN AKQ         YD+ + I  L+K+   ++ GN  FDW   G   G  +  VP+ +SF  G  +  + AAKP K +  K K
Sbjct:   34 DERQTDEERRLLRVEQRNIHHVLATGAYRTRKRGGXXXXXXXXXXXXRPTLEGVRDTNNELFHHVTYTRELVLDADNVVLLANNYAKQVEQSVQVPRYDAIKVISALKKQCTMRKDGNTFFDWATLGVQTGVCYNAVPSKVSFAAGKYEVGI-AAKPKKAREAKVK 198          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: A0A7S2LXM8_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LXM8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.910e-7
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 1
Query:    1 LMQDSGQTEEERRQIRREQRDLMERIVENAHEIADI-----------------NSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSSSYDSARFIEELRKRGLNKRTG--NFDWVRYGRAVGGLFRPVPA-ISFMLGPLD 408
            +M  SGQT+ +RR +RR QR+L+  I  +A                             +   +N+E++  VRY REAV D +N+  +++ AA++   +     YD+    + L K+G  +  G   F+W   G  VG  F  +P+  SF+ GPLD
Sbjct:   56 IMTASGQTDADRRVLRRRQRELLNDISFDAPAAXXXXXXXXXXXXXXXXNEKPKQSGLRSWREKNNELWDNVRYTREAVLDSENMDLISSKAAREVEKIIQVPRYDAITLAQNLVKKGSTRTGGINQFNWAGLGFQVGVCFSSLPSNCSFLYGPLD 211          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: G4YQD1_PHYSP (Nse4_C domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YQD1_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 8.980e-7
Identity = 43/140 (30.71%), Postives = 67/140 (47.86%), Query Frame = 1
Query:    1 LMQDSGQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSSSYDSARF----IEELRKRGLNKRTGNFDWVRYGRAVGGLFRPVPAISFMLGPLD 408
            L+ DS  ++++RRQ+R  QR+L++ + E   E+  +NSD F     +  E++  V Y RE   D   +  L     KQS  +S +   D  +F    +     R     +  FDW   G AVG  F+ VP  + + G LD
Sbjct: 2147 LLTDSNLSDQDRRQVRYMQRELLQGMKEQEEELRSLNSDKFDAAAGDVDELYQHVHYPREGNLDSLCLDELETAVGKQSKMLSGT---DMTKFKALDLINAGSRECTTASTEFDWDGLGVAVGSCFQSVPDTNVLFGRLD 2283          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: K0RA50_THAOC (Non-structural maintenance of chromosomes element 4 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RA50_THAOC)

HSP 1 Score: 56.6 bits (135), Expect = 1.970e-6
Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 1
Query:    1 LMQDSGQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSSSYDSARFIEELRKRGL------NKRTGNFDWVRYGRAVGGLFRPVPA-ISFMLGPLD 408
            LM  SGQT +ER+Q+RR+   L + +++++   +DI      N     +E+   VRY+REA +D  N   LA  +A Q+  +     YD+ R  +   K+G       ++R   FDW   G   G  F  +P  +SF  GP++
Sbjct:   23 LMTLSGQTHQERQQLRRDFTALQQ-LIKSSPLQSDIRPQQLRN-----NELNESVRYIREAKKDASNSSLLAERSALQAENMITVPRYDAVRLAQMASKKGAVLQTPGDRRDYRFDWQGLGLQAGVCFSSLPTGVSFPNGPIE 159          
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Match: UPI000645109C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645109C)

HSP 1 Score: 55.1 bits (131), Expect = 6.420e-6
Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = 1
Query:   19 QTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEIFTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVS-SSYDSARFIEELRKRGLNKRTGNF----DWVRYGRAVGGLFRPVPAISFMLGPLD 408
            QT  ERRQIRRE R L++       ++    ++  + L  +  +I+++V++ REA  D + +   +    +QS    V+ +S+DS  FI  +R   +     N      W R+G+AV   +  VP   FM GP++
Sbjct:  157 QTTNERRQIRREYRLLIQDTQSKRQDLIQPENNGLSELLKKGEDIYSRVQHPREAALDSELLSLASQLGLEQSQKFKVTFNSFDSEGFITRVRDHLMQLSEDNDVNEQGWNRFGQAVNEHYNTVPEFDFMYGPMN 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7531.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A8J2WRH3_9STRA5.450e-2142.03Non-structural maintenance of chromosomes element ... [more]
A0A6H5JT36_9PHAE1.510e-1736.42Non-structural maintenance of chromosomes element ... [more]
D7G069_ECTSI2.720e-1637.09Non-structural maintenance of chromosomes element ... [more]
A0A0P1AQG7_PLAHL5.480e-1435.25Non-structural maintenance of chromosomes element ... [more]
A0A6G0W726_9STRA6.570e-1435.25Non-structural maintenance of chromosomes element ... [more]
A0A1Z5KLL0_FISSO1.140e-833.13Non-structural maintenance of chromosomes element ... [more]
A0A7S2LXM8_9STRA2.910e-729.49Non-structural maintenance of chromosomes element ... [more]
G4YQD1_PHYSP8.980e-730.71Nse4_C domain-containing protein n=1 Tax=Phytophth... [more]
K0RA50_THAOC1.970e-631.47Non-structural maintenance of chromosomes element ... [more]
UPI000645109C6.420e-629.63hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7531contigP-wetherbeei_contig7531:881..1501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra96780
PFAMsNse4_C
Model size465
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
Exons2
Evalue1.36e-16
EggNOG OGsCOG5125@1|root,KOG2866@2759|Eukaryota
Ec32 ortholog descriptionNon-structural maintenance of chromosome element 4, C-terminal
Ec32 orthologEc-05_004030.1
DescriptionDNA repair
Cds size462
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.621188-CDS-P-wetherbeei_contig7531:880..11831683186986.621188-CDS-P-wetherbeei_contig7531:880..1183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7531 881..1183 -
1683186986.6305535-CDS-P-wetherbeei_contig7531:1339..14981683186986.6305535-CDS-P-wetherbeei_contig7531:1339..1498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7531 1340..1498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.638421-UTR-P-wetherbeei_contig7531:1498..15011683186986.638421-UTR-P-wetherbeei_contig7531:1498..1501Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7531 1499..1501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7531.1.1prot_P-wetherbeei_contig7531.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7531 881..1498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7531.1.1

>prot_P-wetherbeei_contig7531.1.1 ID=prot_P-wetherbeei_contig7531.1.1|Name=mRNA_P-wetherbeei_contig7531.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MQDSGQTEEERRQIRREQRDLMERIVENAHEIADINSDTFANLTSENHEI
FTKVRYVREAVEDMQNVKGLANNAAKQSGAVSVSSSYDSARFIEELRKRG
LNKRTGNFDWVRYGRAVGGLFRPVPAISFMLGPLDKPVKAAKPDKPKTVK
KKVH
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mRNA from alignment at P-wetherbeei_contig7531:881..1501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7531.1.1 ID=mRNA_P-wetherbeei_contig7531.1.1|Name=mRNA_P-wetherbeei_contig7531.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig7531:881..1501- (Phaeothamnion wetherbeei SAG_119_79)
CTCATGCAAGACTCGGGCCAGACGGAGGAGGAGCGGCGCCAGATCCGACG TGAGCAGCGCGACCTGATGGAAAGGATCGTCGAAAACGCCCACGAGATTG CAGATATAAACTCCGACACGTTCGCGAACCTGACAAGCGAGAACCATGAG ATTTTCACGAAGGTAATGCTCCAATTTTGAATTTCTGGGCGCTGTCCGAT CAAAATCTCGTGCTCCACATACATAGAATGTGCACGTCGGATATGTGCGA GCCTCGTGTCATAAACGCCATGCACTGCAACCGCGCAACTCTCTCCATTT TCCCGCGCCGTGATATAGGTACGCTACGTGCGCGAGGCGGTCGAAGACAT GCAGAACGTCAAGGGGCTCGCCAACAACGCGGCGAAGCAATCGGGGGCCG TCTCCGTGAGCAGCAGTTACGACTCCGCGCGCTTCATCGAGGAGCTGCGC AAGCGCGGGTTGAACAAGAGGACGGGCAACTTTGACTGGGTTCGTTACGG CCGGGCGGTCGGGGGCCTCTTTCGGCCCGTGCCCGCGATATCCTTCATGC TGGGGCCGCTTGACAAGCCCGTCAAGGCGGCCAAGCCGGACAAGCCCAAG ACCGTCAAGAAAAAGGTTCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7531:881..1501-

>mRNA_P-wetherbeei_contig7531.1.1 ID=mRNA_P-wetherbeei_contig7531.1.1|Name=mRNA_P-wetherbeei_contig7531.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig7531:881..1501- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGACTCGGGCCAGACGGAGGAGGAGCGGCGCCAGATCCGACGTGA
GCAGCGCGACCTGATGGAAAGGATCGTCGAAAACGCCCACGAGATTGCAG
ATATAAACTCCGACACGTTCGCGAACCTGACAAGCGAGAACCATGAGATT
TTCACGAAGGTACGCTACGTGCGCGAGGCGGTCGAAGACATGCAGAACGT
CAAGGGGCTCGCCAACAACGCGGCGAAGCAATCGGGGGCCGTCTCCGTGA
GCAGCAGTTACGACTCCGCGCGCTTCATCGAGGAGCTGCGCAAGCGCGGG
TTGAACAAGAGGACGGGCAACTTTGACTGGGTTCGTTACGGCCGGGCGGT
CGGGGGCCTCTTTCGGCCCGTGCCCGCGATATCCTTCATGCTGGGGCCGC
TTGACAAGCCCGTCAAGGCGGCCAAGCCGGACAAGCCCAAGACCGTCAAG
AAAAAGGTTCAC
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