mRNA_P-wetherbeei_contig7530.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7530.1.1
Unique NamemRNA_P-wetherbeei_contig7530.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7530.1.1 vs. uniprot
Match: A0A835YRV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV6_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.050e-45
Identity = 95/173 (54.91%), Postives = 117/173 (67.63%), Query Frame = 1 
Query:    1 MGQVIAMCASDDAEGGYISRQ---PERYRVIGKSGATIRASQQLDSAILCTLSTGTIIEVAEVKGRRCRVTEPVKGWGSLATESGYLICELV-VPRQRYRVVYPDGVIVRTAADIDTSEYVSTLACGEVVEGTGVTEDCGGVERVQIADGGWVSMHLREE-DARLGEPLLERL 504
            +G VIA C  DDAEGG  +     PE++RV+G+SGAT+R  + LDS +LCTLS GT++ V  VKGRRCR+ EPVKGW S +TE GY+I E V   R RYRVV+ +GV+VRTAAD D SE V  L  GE++EGTG      GVERV+I DG WVS+      D   GE LL +L
Sbjct:    4 IGSVIASCLQDDAEGGTAAAAAAAPEQFRVVGRSGATVRGGENLDSPLLCTLSPGTLVTVDLVKGRRCRIVEPVKGWASTSTEKGYVIVERVDSARPRYRVVFSEGVVVRTAADPDNSEPVRLLPSGEIIEGTGEVVSVEGVERVRIDDG-WVSVTKPPNADGTPGEALLHKL 175
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BLAST of mRNA_P-wetherbeei_contig7530.1.1 vs. uniprot
Match: D7FVU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU7_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.570e-34
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 1 
Query:   67 ERYRVIGKSGATIRASQQLDSAILCTLSTGTIIEVAEVKGRRCRVTEPVKGWGSLATESGYLICELVVPRQRYRVVYPDGVIVRTAADIDTSEYVSTLACGEVVEGTGVTEDCGGVERVQIADGGWVSMHLREED---ARLGEPL 492
            +++ V+G  GA++R   +LDS IL TL  GT++ V+EV+ RR  + +PV GW SL+TE GY I E      RY+VVY DG+IVR+ A I+T E V  +  G++++ TG T+   GVERVQI D GWVSM LRE++   ARL  P+
Sbjct:    6 DKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPVNGWASLSTEDGYGIIEPTKRCSRYKVVYNDGIIVRSTAKIETGEVVKIVHPGDILKATGKTQILDGVERVQI-DSGWVSMRLREDNGVGARLLAPM 149
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BLAST of mRNA_P-wetherbeei_contig7530.1.1 vs. uniprot
Match: D7FVU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU8_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 5.940e-34
Identity = 67/145 (46.21%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:   70 RYRVIGKSGATIRASQQLDSAILCTLSTGTIIEVAEVKGRRCRVTEPVKGWGSLATESGYLICELVVPRQRYRVVYPDGVIVRTAADIDTSEYVSTLACGEVVEGTGVTEDCGGVERVQIADGGWVSMHLREEDARLGEPLLERL 504
            +Y+V+G  GAT+R + +LDS +L TL  GT++ VA+V+ RR  + +P+ GW SL+TESGY+I E +    +Y+VVY +G+ VR++  I+    V    CG V++ TG TE    VERV++ DG WVSM LRE D   G PLL  L
Sbjct:   60 KYQVVGLGGATVRMTARLDSPVLRTLPQGTVVVVAQVRSRRAHIIKPMDGWASLSTESGYVILEAIARPTKYKVVYREGIFVRSSPSIEDGRIVRIAPCGTVLKATGKTEIFDAVERVEVEDG-WVSMRLRE-DKGSGAPLLMAL 202
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BLAST of mRNA_P-wetherbeei_contig7530.1.1 vs. uniprot
Match: A0A7S2Y0S5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0S5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.530e-25
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:   97 ATIRASQQLDSAILCTLSTGTIIEVAEVKGR----------------------RCRVTEPVKGWGSLATESGYLICE-LVVPRQRYRVVYPDGVIVRTAADIDTSEYVSTLACGEVVEGTGVTEDCGGVERVQIADGGWVSMHLREEDARLGEPLLERL 504
            AT+R  + L+S+I+  L  GTI+EV E++                        R R+  PV+GW SL ++SG  + E L   + +YRV+YPDG++VR  A+ID    V +L  GE+VE TG +    GVER+QIADG W+S +LRE+    GE LLER+
Sbjct:    1 ATVRTQEFLNSSIVQILPRGTIVEVCEIRESPNNLQPHDFNPLMLKTECTTRGRARILSPVEGWVSLQSDSGAALLEKLGEVKMKYRVIYPDGIVVRNKANIDQGRIVRSLEYGEIVEATGESIFYEGVERIQIADG-WISRNLREDGDARGEFLLERV 158
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BLAST of mRNA_P-wetherbeei_contig7530.1.1 vs. uniprot
Match: D7G2D9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2D9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.250e-5
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:   70 RYRVIGKSGATIRASQQLDSAILCTLSTGTIIEVAE-------------VKGRRCRVTEPVKGWGSLATESGYLICELVVPRQRYRVVYPDGVIVRTAADIDTSEYVSTLACGEVVEGTGVT-EDCGG--VERVQIADGG 441
            RYRV+ + GA +R   +L S  L  L   +++EV E              +G    V  P+ G      E    I +L+ P Q YRVV PDG +VR   ++ +S+ V T+A GE+V+ +     D G   V+R+++ADGG
Sbjct:  118 RYRVVCRDGAFVRHGIELTSPFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVE----IVKLLQPLQ-YRVVLPDGAVVRRTVELASSQ-VKTIAAGELVQVSAKKFSDLGNRCVQRLKLADGG 251
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7530.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YRV6_9STRA2.050e-4554.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FVU7_ECTSI3.570e-3448.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVU8_ECTSI5.940e-3446.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y0S5_9STRA1.530e-2540.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G2D9_ECTSI1.250e-533.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7530contigP-wetherbeei_contig7530:980..2709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_76104
PFAMsRUN,RabGAP-TBC
Model size1009
Max annot lvl2759|Eukaryota
KEGG koko:K19951,ko:K20176
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.19e-07
EggNOG OGsCOG5210@1|root,KOG2222@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_004320.1
Descriptionregulation of Rab protein signal transduction
Cds size507
COG categoryZ
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.5634525-CDS-P-wetherbeei_contig7530:979..10511683186986.5634525-CDS-P-wetherbeei_contig7530:979..1051Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7530 980..1051 +
1683186986.5755634-CDS-P-wetherbeei_contig7530:1369..14851683186986.5755634-CDS-P-wetherbeei_contig7530:1369..1485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7530 1370..1485 +
1683186986.5855322-CDS-P-wetherbeei_contig7530:1888..22071683186986.5855322-CDS-P-wetherbeei_contig7530:1888..2207Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7530 1889..2207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.5976942-UTR-P-wetherbeei_contig7530:2207..27091683186986.5976942-UTR-P-wetherbeei_contig7530:2207..2709Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7530 2208..2709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7530.1.1prot_P-wetherbeei_contig7530.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7530 980..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7530.1.1

>prot_P-wetherbeei_contig7530.1.1 ID=prot_P-wetherbeei_contig7530.1.1|Name=mRNA_P-wetherbeei_contig7530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MGQVIAMCASDDAEGGYISRQPERYRVIGKSGATIRASQQLDSAILCTLS
TGTIIEVAEVKGRRCRVTEPVKGWGSLATESGYLICELVVPRQRYRVVYP
DGVIVRTAADIDTSEYVSTLACGEVVEGTGVTEDCGGVERVQIADGGWVS
MHLREEDARLGEPLLERL*
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mRNA from alignment at P-wetherbeei_contig7530:980..2709+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7530.1.1 ID=mRNA_P-wetherbeei_contig7530.1.1|Name=mRNA_P-wetherbeei_contig7530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1730bp|location=Sequence derived from alignment at P-wetherbeei_contig7530:980..2709+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCAAGTAATAGCAATGTGCGCCAGCGACGACGCGGAGGGAGGTTA
CATCTCCAGACAACCGGAAAGAGTGAGAAAGAAATCCCGTTTCGAGCTCA
CTTCTTTCACTCCGCTTCTCTCTCATTGGGATGCTTTCCGTGCATCCTTG
AGCGTCGCCGGCCCTACCAGGCCCGTTCTTGTAGCGATAGAGTTGCTTTT
GGTGCTCCTGTTTTCCTTCTAGTGGGGTATTGTTGTGTTAGGGCTCTGTT
TTTCAGGGAGCTTTTCTGACACATCCGCATGAATGTTGGGCGAGCGGCGT
CCCCTCTACGCAAACGAGACCTCTTTTTATAAAGCTTTGTTCGCAAATGT
TTCGCTGATGCAACATCGTGGCCCCTGATACTTATGGCAGTATCGGGTCA
TCGGCAAGAGCGGAGCAACCATTCGGGCTTCACAGCAGCTAGATTCGGCG
ATTCTGTGCACGCTTTCAACGGGGACGATCATAGAAGTCGCAGAAGTGAA
GGGCAGGTGAGGGATCAACATAGTCATACTCCTATTCGATCGGTTTTGCG
GTGTGCGAAATTTCGGACTCCCAGCTTTGGACGCGTTCGCTTGCGCGAGG
ATTAAGCGTTACGGTCTAGCTGATTCCGTGTAGCAAAGCCTCTTGACGGA
TTTTTAAAGTAGGGGGTGTGCCGCTTCCGTAGCGATTGCAAATGACTCTT
CTCTTTCTCACCGCCGCGCTACTAACTGCCTCTGAAATATCGTTTCACCA
TTGCTGCTACACGCGCAATGTTTTTTGAAAAGTCCCCAAGTTTTCCAATC
CGGACCCGCTTTCTGACACTGTTTTCGCCTCGCCAACCAATTCACCAACC
CACCCCATCTTACACCCTTACAACGCCAATCCATTTCCCGAAAACGAAAC
AAAACGAAGGCGGTGCCGCGTGACAGAGCCGGTGAAGGGGTGGGGCAGCC
TGGCAACGGAGAGTGGCTACCTAATCTGCGAGTTGGTGGTGCCGCGGCAG
CGCTACCGCGTTGTCTACCCCGACGGCGTCATCGTCCGCACCGCCGCCGA
CATTGACACGTCGGAATACGTGTCGACGCTGGCGTGCGGCGAGGTTGTCG
AGGGGACGGGCGTCACGGAGGACTGCGGCGGCGTCGAGCGCGTCCAAATA
GCCGACGGCGGCTGGGTCAGCATGCACCTACGGGAAGAGGACGCGAGGCT
CGGCGAGCCGCTCTTAGAAAGGTTATGATAATTTTTTTGGCAGTGGAGGG
GAGGCGAGATTTGCAGAGGCGGCTGGTGGGGCGGGGCGGCGCGGCGCAGC
GCGGCGATGTCCAATGGATTTTGGCGCGGAGCGAATGCAGCTGGGAGGAA
AGAACGGAGAAAGGCACGGAGCGGCCGCCAGCGCGCTCGCTGGTCCTTGA
CCGGCCCCTCGACGCCCTGCTGATTCCCGGCGGCGAGCCGGCTCGTAGCA
GGTGTAGTGAAGAGTCGCGAGGTTTTCTTCTTTCAGACCGGCCGATCATA
TACAGGCCACGAGACACATCCGGGCGAGCGGCGCAGCGGTCGCCACGTTG
CCCTCCTTCTTTGGTTGGGATGGCCACGAAGGAAGGGCGTGAGAACGCGG
CACAGAAATGAAGGTGCGCCGACTGCATGCTTCAAAGTTTTTGGGGCGGC
AATCGATATCATCGGTGATGGGTGCAGTTCTTTTCCTACCTTTGCTGCCA
ACAATTACTAACCAGACCAGCTTTGAACAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7530:980..2709+

>mRNA_P-wetherbeei_contig7530.1.1 ID=mRNA_P-wetherbeei_contig7530.1.1|Name=mRNA_P-wetherbeei_contig7530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig7530:980..2709+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCAAGTAATAGCAATGTGCGCCAGCGACGACGCGGAGGGAGGTTA
CATCTCCAGACAACCGGAAAGATATCGGGTCATCGGCAAGAGCGGAGCAA
CCATTCGGGCTTCACAGCAGCTAGATTCGGCGATTCTGTGCACGCTTTCA
ACGGGGACGATCATAGAAGTCGCAGAAGTGAAGGGCAGGCGGTGCCGCGT
GACAGAGCCGGTGAAGGGGTGGGGCAGCCTGGCAACGGAGAGTGGCTACC
TAATCTGCGAGTTGGTGGTGCCGCGGCAGCGCTACCGCGTTGTCTACCCC
GACGGCGTCATCGTCCGCACCGCCGCCGACATTGACACGTCGGAATACGT
GTCGACGCTGGCGTGCGGCGAGGTTGTCGAGGGGACGGGCGTCACGGAGG
ACTGCGGCGGCGTCGAGCGCGTCCAAATAGCCGACGGCGGCTGGGTCAGC
ATGCACCTACGGGAAGAGGACGCGAGGCTCGGCGAGCCGCTCTTAGAAAG
GTTATGA
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