mRNA_P-wetherbeei_contig753.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig753.1.1
Unique NamemRNA_P-wetherbeei_contig753.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig753.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig753contigP-wetherbeei_contig753:13..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4565.Traes_2AS_321221489.2
PFAMsRetrotran_gag_2,Retrotran_gag_3
Model size369
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.12e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37VN9@33090|Viridiplantae,3GJMM@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size369
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.4202962-CDS-P-wetherbeei_contig753:12..3811683186986.4202962-CDS-P-wetherbeei_contig753:12..381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig753 13..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig753.1.1prot_P-wetherbeei_contig753.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig753 13..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig753.1.1

>prot_P-wetherbeei_contig753.1.1 ID=prot_P-wetherbeei_contig753.1.1|Name=mRNA_P-wetherbeei_contig753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
LYSYFFASCTLEAFDCICDITDGDGVKCWQKLVEKYSASSPTRINRIKKD
LNNIKMSENETPDAYFSRIDYLRAELRDAERPVADDEIKTILLSGLSRNY
STIQTHLEYDCERYSLDEIKERM
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mRNA from alignment at P-wetherbeei_contig753:13..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig753.1.1 ID=mRNA_P-wetherbeei_contig753.1.1|Name=mRNA_P-wetherbeei_contig753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig753:13..381- (Phaeothamnion wetherbeei SAG_119_79)
CTCTACTCGTATTTCTTCGCAAGCTGCACGCTCGAGGCTTTCGACTGCAT
CTGCGACATCACCGACGGCGACGGCGTAAAGTGCTGGCAGAAGCTCGTCG
AAAAATACAGCGCCTCGAGTCCAACTCGCATCAACAGAATCAAGAAGGAC
CTGAACAACATCAAGATGTCCGAGAACGAGACGCCCGACGCGTACTTCTC
AAGAATTGATTACCTTCGTGCAGAGCTCCGCGACGCCGAGCGTCCAGTCG
CAGACGACGAGATCAAGACGATTCTCCTATCTGGGCTCTCTCGCAACTAC
TCTACGATCCAGACGCATCTGGAGTACGATTGCGAGCGCTACTCCCTTGA
TGAGATCAAGGAGAGGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig753:13..381-

>mRNA_P-wetherbeei_contig753.1.1 ID=mRNA_P-wetherbeei_contig753.1.1|Name=mRNA_P-wetherbeei_contig753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig753:13..381- (Phaeothamnion wetherbeei SAG_119_79)
CTCTACTCGTATTTCTTCGCAAGCTGCACGCTCGAGGCTTTCGACTGCAT
CTGCGACATCACCGACGGCGACGGCGTAAAGTGCTGGCAGAAGCTCGTCG
AAAAATACAGCGCCTCGAGTCCAACTCGCATCAACAGAATCAAGAAGGAC
CTGAACAACATCAAGATGTCCGAGAACGAGACGCCCGACGCGTACTTCTC
AAGAATTGATTACCTTCGTGCAGAGCTCCGCGACGCCGAGCGTCCAGTCG
CAGACGACGAGATCAAGACGATTCTCCTATCTGGGCTCTCTCGCAACTAC
TCTACGATCCAGACGCATCTGGAGTACGATTGCGAGCGCTACTCCCTTGA
TGAGATCAAGGAGAGGATG
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