mRNA_P-wetherbeei_contig7524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7524.1.1
Unique NamemRNA_P-wetherbeei_contig7524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A1Y1ZF17_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZF17_9FUNG)

HSP 1 Score: 111 bits (278), Expect = 2.210e-26
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKRVGHCFCDATSHSLCANGQL 318
            M+D + +  KSG+VLWSK+ + ++GSP+N L+K VL+EERGG  + T D Y L WT ANELD V V+V QK+LQL Y+DELL  +K+V   FC A    +   G+L
Sbjct:    1 MIDLITVLTKSGIVLWSKSYASIQGSPINSLVKEVLIEERGGDNTYTRDSYVLNWTFANELDLVFVIVNQKILQLTYIDELLETVKQV---FCKAYGQEVKLQGEL 103
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A397E9P5_9STRA (SRP-alpha_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E9P5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.350e-25
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKR 261
            MLD V IF +SG VLWS++M KL+G+PV+ L+K+VLLEER G      + Y+++W+L N+L  V+VVVYQK+LQL YVDELL R+KR
Sbjct:    1 MLDHVSIFSQSGTVLWSRSMCKLRGNPVDQLVKTVLLEERLGRKEFNYESYQMRWSLENKLQLVLVVVYQKVLQLLYVDELLERLKR 87
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A3L6VC95_9STRA (SRP-alpha_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VC95_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.950e-25
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKR 261
            MLD V IF +SG VLWS++M KL+G+PV+ L+K+VLLEER G      + Y+++W+L N+L  V+VVVYQK+LQL YVDELL R+KR
Sbjct:    1 MLDHVSIFSQSGTVLWSRSMCKLRGNPVDQLVKTVLLEERLGRKEFNYESYQMRWSLENKLQLVLVVVYQKVLQLLYVDELLERLKR 87
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A015L066_RHIIW (Srp101p n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015L066_RHIIW)

HSP 1 Score: 106 bits (265), Expect = 1.190e-24
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKRVGHCFCDATSHSLCANGQLTHF 327
            MLD   I  K G+VLWSK+ +++  SPVN LI  VL+EER G  S T D Y L+WT ANELD + V  YQK+LQLAY++ELL  +K+    FCD  ++ +  +G+L  F
Sbjct:    1 MLDFFTILTKGGIVLWSKSFTRITSSPVNSLIGDVLIEERAGENSYTKDSYSLKWTFANELDLIFVAAYQKILQLAYIEELLATVKKF---FCDKFANFIKDSGKLHKF 106
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A2I1GLX1_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1GLX1_9GLOM)

HSP 1 Score: 106 bits (265), Expect = 1.390e-24
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKRVGHCFCDATSHSLCANGQLTHF 327
            MLD   I  K G+VLWSK+ +++  SPVN LI  VL+EER G  S T D Y L+WT ANELD + V  YQK+LQLAY++ELL  +K+    FCD  ++ +  +G+L  F
Sbjct:    1 MLDFFTILTKGGIVLWSKSFTRITSSPVNSLIGDVLIEERAGENSYTKDSYSLKWTFANELDLIFVAAYQKILQLAYIEELLATVKKF---FCDKFANLIKDSGKLHKF 106
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A2I1EEQ8_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1EEQ8_9GLOM)

HSP 1 Score: 106 bits (265), Expect = 1.420e-24
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKRVGHCFCDATSHSLCANGQLTHF 327
            MLD   I  K G+VLWSK+ +++  SPVN LI  VL+EER G  S T D Y L+WT ANELD + V  YQK+LQLAY++ELL  +K+    FCD  ++ +  +G+L  F
Sbjct:    1 MLDFFTILTKGGIVLWSKSFTRITSSPVNSLIGDVLIEERAGENSYTKDSYSLKWTFANELDLIFVAAYQKILQLAYIEELLATVKKF---FCDKFANFIKDSGKLHKF 106
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A2N1P2H6_9GLOM (SRP54 domain-containing protein n=8 Tax=Rhizophagus TaxID=1129544 RepID=A0A2N1P2H6_9GLOM)

HSP 1 Score: 106 bits (265), Expect = 1.430e-24
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKRVGHCFCDATSHSLCANGQLTHF 327
            MLD   I  K G+VLWSK+ +++  SPVN LI  VL+EER G  S T D Y L+WT ANELD + V  YQK+LQLAY++ELL  +K+    FCD  ++ +  +G+L  F
Sbjct:    1 MLDFFTILTKGGIVLWSKSFTRITSSPVNSLIGDVLIEERAGENSYTKDSYSLKWTFANELDLIFVAAYQKILQLAYIEELLATVKKF---FCDKFANFIKDSGKLHKF 106
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: T0QHD4_SAPDV (Fused signal recognition particle receptor n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHD4_SAPDV)

HSP 1 Score: 106 bits (264), Expect = 1.720e-24
Identity = 50/87 (57.47%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKR 261
            MLD V IF +SG VLWS+++ +L+G+PV++L+K+VLLEER G   +  D Y+++WTL N+L+ V+VVVYQK+LQL YVDELL R+K+
Sbjct:    1 MLDHVSIFSQSGTVLWSRSLCQLRGNPVDELVKTVLLEERTGRKELNYDAYQMRWTLENKLNLVLVVVYQKVLQLLYVDELLERLKQ 87
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A1V9YDI3_9STRA (Signal recognition particle receptor subunit alpha n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDI3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.400e-24
Identity = 50/86 (58.14%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIK 258
            MLD V IF +SG VLWS+++ +L+G+PV++L+K+VLLEER G   +  D Y+++WTL N+L+ V+VVVYQK+LQL YVDELL R+K
Sbjct:    1 MLDHVSIFSQSGTVLWSRSLCQLRGNPVDELVKTVLLEERTGRKELNYDAYQMRWTLENKLNLVLVVVYQKVLQLLYVDELLERLK 86
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BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Match: A0A1W0A6K3_9STRA (Signal recognition particle receptor subunit alpha n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6K3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.380e-24
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDWYKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIK 258
            MLD V IF +SG VLWS+++ KL+G+PV+ L+K+VLLEER G      D Y+++WTL N+L+ V+VVVYQK+LQL YVDELL R+K
Sbjct:    1 MLDHVSIFSQSGAVLWSRSLCKLRGNPVDALVKTVLLEERTGRKEFNYDAYQMRWTLENKLNLVLVVVYQKVLQLLYVDELLERLK 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1ZF17_9FUNG2.210e-2650.94p-loop containing nucleoside triphosphate hydrolas... [more]
A0A397E9P5_9STRA1.350e-2558.62SRP-alpha_N domain-containing protein n=2 Tax=Apha... [more]
A0A3L6VC95_9STRA5.950e-2558.62SRP-alpha_N domain-containing protein n=1 Tax=Apha... [more]
A0A015L066_RHIIW1.190e-2449.54Srp101p n=1 Tax=Rhizophagus irregularis (strain DA... [more]
A0A2I1GLX1_9GLOM1.390e-2449.54Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A2I1EEQ8_9GLOM1.420e-2449.54Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A2N1P2H6_9GLOM1.430e-2449.54SRP54 domain-containing protein n=8 Tax=Rhizophagu... [more]
T0QHD4_SAPDV1.720e-2457.47Fused signal recognition particle receptor n=1 Tax... [more]
A0A1V9YDI3_9STRA2.400e-2458.14Signal recognition particle receptor subunit alpha... [more]
A0A1W0A6K3_9STRA4.380e-2459.30Signal recognition particle receptor subunit alpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7524contigP-wetherbeei_contig7524:248..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog588596.U9UGV8
Preferred nameSRP101
PFAMsSRP-alpha_N,SRP54,SRP54_N,SRX
Model size327
Max annot lvl4751|Fungi
KEGG koko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0030867,GO:0031090,GO:0031984,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042175,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:1901265,GO:1901363
Exons1
Evalue2.33e-25
EggNOG OGsCOG0552@1|root,KOG0781@2759|Eukaryota,38EXV@33154|Opisthokonta,3NWSW@4751|Fungi
DescriptionSignal recognition particle receptor
Cds size327
COG categoryU
BRITEko00000,ko00001,ko02000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.2959573-CDS-P-wetherbeei_contig7524:247..5741683186986.2959573-CDS-P-wetherbeei_contig7524:247..574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7524 248..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7524.1.1prot_P-wetherbeei_contig7524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7524 248..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7524.1.1

>prot_P-wetherbeei_contig7524.1.1 ID=prot_P-wetherbeei_contig7524.1.1|Name=mRNA_P-wetherbeei_contig7524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MLDQVCIFDKSGVVLWSKTMSKLKGSPVNDLIKSVLLEERGGSASVTTDW
YKLQWTLANELDFVVVVVYQKMLQLAYVDELLTRIKRVGHCFCDATSHSL
CANGQLTHF
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mRNA from alignment at P-wetherbeei_contig7524:248..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7524.1.1 ID=mRNA_P-wetherbeei_contig7524.1.1|Name=mRNA_P-wetherbeei_contig7524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig7524:248..574+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGGACCAAGTGTGCATCTTCGACAAGTCGGGCGTCGTGCTATGGTC
CAAGACCATGTCGAAGCTCAAGGGCAGCCCGGTCAACGACCTGATAAAGT
CTGTCTTGCTCGAGGAGCGCGGGGGGAGCGCGTCGGTCACCACGGACTGG
TACAAGCTGCAATGGACGCTCGCCAACGAGCTCGACTTCGTCGTCGTCGT
CGTGTACCAGAAGATGCTCCAGCTGGCCTACGTCGACGAGCTCCTAACCA
GGATCAAGAGGGTCGGTCACTGCTTCTGCGACGCAACTAGTCATTCACTC
TGTGCTAATGGACAACTCACTCATTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7524:248..574+

>mRNA_P-wetherbeei_contig7524.1.1 ID=mRNA_P-wetherbeei_contig7524.1.1|Name=mRNA_P-wetherbeei_contig7524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig7524:248..574+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGGACCAAGTGTGCATCTTCGACAAGTCGGGCGTCGTGCTATGGTC
CAAGACCATGTCGAAGCTCAAGGGCAGCCCGGTCAACGACCTGATAAAGT
CTGTCTTGCTCGAGGAGCGCGGGGGGAGCGCGTCGGTCACCACGGACTGG
TACAAGCTGCAATGGACGCTCGCCAACGAGCTCGACTTCGTCGTCGTCGT
CGTGTACCAGAAGATGCTCCAGCTGGCCTACGTCGACGAGCTCCTAACCA
GGATCAAGAGGGTCGGTCACTGCTTCTGCGACGCAACTAGTCATTCACTC
TGTGCTAATGGACAACTCACTCATTTT
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