mRNA_P-wetherbeei_contig7520.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7520.3.1
Unique NamemRNA_P-wetherbeei_contig7520.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7520.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7520contigP-wetherbeei_contig7520:1166..2952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1543
Hectar predicted targeting categorymitochondrion
Exons2
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.0709074-UTR-P-wetherbeei_contig7520:1165..15501683186986.0709074-UTR-P-wetherbeei_contig7520:1165..1550Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7520 1166..1550 -
1683186986.100999-UTR-P-wetherbeei_contig7520:2679..29521683186986.100999-UTR-P-wetherbeei_contig7520:2679..2952Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7520 2680..2952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.0806313-CDS-P-wetherbeei_contig7520:1550..20331683186986.0806313-CDS-P-wetherbeei_contig7520:1550..2033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7520 1551..2033 -
1683186986.0910523-CDS-P-wetherbeei_contig7520:2277..26791683186986.0910523-CDS-P-wetherbeei_contig7520:2277..2679Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7520 2278..2679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7520.3.1prot_P-wetherbeei_contig7520.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7520 1551..2679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7520.3.1

>prot_P-wetherbeei_contig7520.3.1 ID=prot_P-wetherbeei_contig7520.3.1|Name=mRNA_P-wetherbeei_contig7520.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=295bp
MRNHAPFCAFGTYSRTGSLTFPSGRGPAFRTIPCSFPASARYGPRGRATA
TGLPRAPPPPLQISAAGVHLTLDIKVMAGMAVACLPYSSERGRWAANHLI
TALPLVRSCPGVVAFWPGFMVRLQALAAVDQAAVDRGTLEDFARCWEVGC
RNTGGALAPALTAPFGGPLIAADLDAVQPPLNPLYQAFLRTWIKWLSAPP
PPSPSPPPSPSPPPLTQRLSLPSPPPPPPPTAGLPGASTRWRPPGGKLRR
EPVRRSIGTSTETAATPVVMVVVDDAAGRERGIPRASSGLLLTD*
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mRNA from alignment at P-wetherbeei_contig7520:1166..2952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7520.3.1 ID=mRNA_P-wetherbeei_contig7520.3.1|Name=mRNA_P-wetherbeei_contig7520.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1787bp|location=Sequence derived from alignment at P-wetherbeei_contig7520:1166..2952- (Phaeothamnion wetherbeei SAG_119_79)
AGGCGCTCCGTAGCGGCGCAGCAGCCACCGGTAAGGCAAGCAACAGGTCT
GGGACGCCGATGACGGCCTCCCCTTCTTGCGCGCTGTCTGCGCCCGTAAC
GGCAGGGGAGATGATGCAATCGGTGCTGCTGTTGGACTGGTGCGCCTCGC
AGTGCGTCGAACAGGTAAAGTGGAGCTTCTCGAGGGGCGTTTTGTGGATT
CGAAAAAACGAATAATCTCCGCACTCTCCGAATTTTGCTCCGGGCGTTAG
CAAGCAAGCGCGTTCTATCATCGATGAGGAACCACGCGCCTTTCTGTGCT
TTTGGGACTTACTCGCGCACGGGCTCGCTTACCTTCCCAAGCGGACGCGG
GCCTGCTTTCCGTACCATCCCCTGCTCCTTCCCTGCCTCGGCACGGTACG
GTCCGCGCGGCCGCGCAACTGCAACCGGTCTGCCACGCGCCCCTCCTCCT
CCCCTGCAGATCTCCGCGGCGGGCGTTCACCTGACGCTGGACATCAAAGT
GATGGCCGGCATGGCTGTGGCCTGCCTCCCGTATTCGTCCGAACGCGGCC
GGTGGGCAGCCAATCACCTGATCACGGCACTGCCGCTCGTGCGCAGCTGC
CCTGGCGTGGTCGCCTTCTGGCCGGGTTTTATGGTCCGGCTCCAGGCCCT
CGCGGCTGTCGACCAAGCTGCCGTGGTGGGAGATTGCACGGACGGACGGA
CAGACGGTGTAGCCAGGGAATTGCTTTGTTTCTCTGTTTTTGGCGGCTTG
GTCTCCGAGTTTGGCTCTTGATGTGAAACAGGATGGCGTTGGCGGCGTCA
TTGCGACCCCGATTTTTCTCCGATGCGGGGTTGAAAGTGGTTTCCCTTTG
TTTAAACCGGCGAAATGTCGAAGCATCCGCTTTCCGGTGTTGCTCCACCA
ATCTGGCCCCTGGCTGCAGGATCGCGGGACGCTGGAGGACTTCGCGCGCT
GCTGGGAGGTCGGGTGCCGGAACACGGGCGGAGCCCTGGCACCGGCCCTG
ACGGCTCCGTTTGGGGGGCCCCTCATCGCGGCGGACCTCGATGCCGTGCA
GCCGCCGCTCAATCCGCTTTACCAGGCGTTCCTGAGGACTTGGATCAAGT
GGCTCTCGGCACCGCCGCCGCCATCGCCGTCGCCGCCGCCATCGCCGTCG
CCGCCGCCATTGACACAGCGACTCTCGCTACCATCGCCGCCGCCACCGCC
ACCGCCGACGGCAGGGCTGCCCGGCGCGAGCACACGATGGCGGCCTCCGG
GGGGAAAATTGCGGCGGGAGCCCGTGCGGCGCTCTATCGGCACTTCCACC
GAGACCGCCGCTACTCCCGTCGTCATGGTTGTCGTTGATGACGCCGCTGG
CCGAGAGCGCGGCATTCCTCGGGCATCGAGCGGACTCCTGTTGACTGATT
GACGAAACCGGGTCACCGCGAGGGCTGCCTGGCCTGCCGCCGTCATCGCT
GCGCTGGCTGGCAGCAGAGCCAGCCGGCCGGCCGGCCCACCGTGCGCCTG
GCTGGAGCGACGGCGAAAAGAACCACCGGTGGCCGAAGGCAGACGCTTCC
GCGGCTGCGGCAGGATCGGACCCACAGCGGCCGTGGCCTGGGGGCGGTGT
GGTTGTCGTGGCTGCCGCAGCGCCTTGCGGCGGCAGCGGTGCCGGCACTG
GCGGCGAGTGCATGCTGGAAAGCATCTGCGCGCGGCGCAGGAGTGTTGGC
AGGCACGGCAGGGCCATGGGTGCGGCTGGGCGCAGCGGCGATGGCGATCG
GCGGCACCGGGAGGGCAGTGGCGGTAAAACATGCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7520:1166..2952-

>mRNA_P-wetherbeei_contig7520.3.1 ID=mRNA_P-wetherbeei_contig7520.3.1|Name=mRNA_P-wetherbeei_contig7520.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig7520:1166..2952- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGAACCACGCGCCTTTCTGTGCTTTTGGGACTTACTCGCGCACGGG
CTCGCTTACCTTCCCAAGCGGACGCGGGCCTGCTTTCCGTACCATCCCCT
GCTCCTTCCCTGCCTCGGCACGGTACGGTCCGCGCGGCCGCGCAACTGCA
ACCGGTCTGCCACGCGCCCCTCCTCCTCCCCTGCAGATCTCCGCGGCGGG
CGTTCACCTGACGCTGGACATCAAAGTGATGGCCGGCATGGCTGTGGCCT
GCCTCCCGTATTCGTCCGAACGCGGCCGGTGGGCAGCCAATCACCTGATC
ACGGCACTGCCGCTCGTGCGCAGCTGCCCTGGCGTGGTCGCCTTCTGGCC
GGGTTTTATGGTCCGGCTCCAGGCCCTCGCGGCTGTCGACCAAGCTGCCG
TGGATCGCGGGACGCTGGAGGACTTCGCGCGCTGCTGGGAGGTCGGGTGC
CGGAACACGGGCGGAGCCCTGGCACCGGCCCTGACGGCTCCGTTTGGGGG
GCCCCTCATCGCGGCGGACCTCGATGCCGTGCAGCCGCCGCTCAATCCGC
TTTACCAGGCGTTCCTGAGGACTTGGATCAAGTGGCTCTCGGCACCGCCG
CCGCCATCGCCGTCGCCGCCGCCATCGCCGTCGCCGCCGCCATTGACACA
GCGACTCTCGCTACCATCGCCGCCGCCACCGCCACCGCCGACGGCAGGGC
TGCCCGGCGCGAGCACACGATGGCGGCCTCCGGGGGGAAAATTGCGGCGG
GAGCCCGTGCGGCGCTCTATCGGCACTTCCACCGAGACCGCCGCTACTCC
CGTCGTCATGGTTGTCGTTGATGACGCCGCTGGCCGAGAGCGCGGCATTC
CTCGGGCATCGAGCGGACTCCTGTTGACTGATTGA
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