mRNA_P-wetherbeei_contig7514.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7514.1.1
Unique NamemRNA_P-wetherbeei_contig7514.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.370e-28
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y +VGFS  D+G RFF F+ ++  TN+N++ YFR LAA F +F+ AQ FSG+SV+  VLFCG+L+P  D+P  WIW F ++PL+WAFRA  +NEF
Sbjct:  542 YFLVGFSTSDNGARFFTFMVIVTATNVNVTQYFRFLAAFFPNFTLAQGFSGLSVLVCVLFCGYLIPGDDVPAWWIWAFHVNPLTWAFRAAVLNEF 636
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.880e-28
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y +VGFS  D+G RFF F+ +++VTN+N++ YFR LAA   +F+ AQ F+G+SV+  VLFCG+L+P +D+P  WIW F ++PL+WAFRA  +NEF
Sbjct:  630 YFLVGFSTSDNGARFFTFMVIVIVTNVNVTQYFRFLAAFMPNFTLAQGFAGLSVLVCVLFCGYLIPGADVPAWWIWAFHVNPLTWAFRAAVLNEF 724
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.710e-26
Identity = 48/87 (55.17%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:   25 DDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            + + + FF F A+++V NLNM+AYFR +AA+  +FS AQSF+G+++VF+VLFCGFLVP  DI  V+IW++W++P+SWAFR + +NEF
Sbjct:  525 ERTAQNFFVFYAMILVLNLNMAAYFRLVAAIMPNFSIAQSFAGVTLVFIVLFCGFLVPEPDIVPVFIWIYWINPISWAFRTLVLNEF 611
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.640e-22
Identity = 47/95 (49.47%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y M G +  D+GR FF +L + +  NLNM+AYFRALAA+    + A + + +S+VF++LFCG+LVP  D P V+IW+FW +P++WAFR++ +NEF
Sbjct:  554 YFMTGLA-SDAGR-FFIYLVIALGFNLNMAAYFRALAAIMPSLTVASASATLSLVFIILFCGYLVPEPDTPDVFIWIFWCNPMTWAFRSLVLNEF 646
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: D0MSG0_PHYIT (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MSG0_PHYIT)

HSP 1 Score: 79.7 bits (195), Expect = 2.360e-15
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAF-LAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y M GF    SG  +F F L  +V+TNL + A+F AL A+  DF+ A+  S  SV F V+F GF+VP S IP  ++W++W++PL+W  RA+A++++
Sbjct:  126 YKMCGFV---SGVDYFLFFLLCMVLTNLALCAWFFALTAMAPDFNIAKPCSTFSVTFYVVFAGFIVPRSQIPDFFVWIYWINPLAWCLRAVAVDQY 218
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: K3WZJ4_GLOUD (Uncharacterized protein n=2 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZJ4_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 2.390e-15
Identity = 39/95 (41.05%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y M GF+   S   +  F AVLV+TN+   A+F  +AA+  + + A   + +S++F++LF GF+V  + IP  +IW++WLSP++W+ RA+AINE+
Sbjct:  579 YWMCGFT--SSASSYIIFEAVLVLTNIVFGAWFFFIAAISPNINMASPIANVSLLFIILFAGFVVLKTQIPDYFIWLYWLSPIAWSIRAIAINEY 671
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: A0A1V9ZUZ4_9STRA (ATP-binding Cassette (ABC) Superfamily (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZUZ4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.880e-15
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y + GF+   S   F  +L +L V NL    +F  L++V  +   A+  S +SV+F VLF GF++ + D+PG +IW++W+ PLSW  RA+AIN++
Sbjct:    2 YWVTGFT--ASAGAFLTYLLLLFVINLTFITWFFFLSSVSPNLHVAEPVSLVSVLFYVLFAGFIMSSDDMPGYFIWIYWIDPLSWCIRALAINQY 94
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: A0A1V9Y4G9_9STRA (ATP-binding Cassette (ABC) Superfamily (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4G9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.690e-15
Identity = 38/95 (40.00%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y + GF+ +     F  +L +L VTNL  + +F  LAA+  + + AQ  S +SV+F VLF GF++ A+D+P  ++W++W+ PL+W  RA+AIN++
Sbjct:  149 YWVTGFTANAGA--FLTYLLLLFVTNLAFTTWFFFLAAICPNLNVAQPVSMVSVLFYVLFAGFIMSAADMPDYFVWIYWIDPLAWCIRALAINQY 241
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: T0SCH1_SAPDV (ABC transporter domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0SCH1_SAPDV)

HSP 1 Score: 78.2 bits (191), Expect = 8.270e-15
Identity = 38/95 (40.00%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y + GF+ D     F  +L +L VTNL  + +F  LA++  + + AQ  S +SV+F VLF GF++ +SD+P  ++W++W+ PL+W  RA+AIN++
Sbjct:  401 YWVTGFTSDVGA--FLTYLLLLFVTNLAFTTWFFFLASISPNLNVAQPVSMVSVLFYVLFSGFIMSSSDMPDYFVWIYWIDPLAWCIRALAINQY 493
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BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Match: A0A6A3HZA5_9STRA (ABC transporter domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HZA5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.490e-14
Identity = 36/95 (37.89%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    1 YSMVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGISVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF 285
            Y M GF  +     +F +L +LV+TNL +S +F AL A+  +   A+  S  S+VF+++F GF+ P S IP   +W++W++P+ W  RA+++NE+
Sbjct:  220 YWMCGFVANVGA--YFIYLILLVLTNLVLSTWFFALTAMCPNLDIAKPMSSFSIVFIIIFAGFVQPKSQIPDYLVWIYWINPIGWCMRALSVNEY 312
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFP2_ECTSI1.370e-2854.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFN4_ECTSI1.880e-2853.68Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
A0A835ZIR5_9STRA2.710e-2655.17ABC-2 type transporter-domain-containing protein n... [more]
A0A835Z0F1_9STRA1.640e-2249.47ABC-2 type transporter-domain-containing protein n... [more]
D0MSG0_PHYIT2.360e-1543.75ATP-binding Cassette (ABC) Superfamily n=1 Tax=Phy... [more]
K3WZJ4_GLOUD2.390e-1541.05Uncharacterized protein n=2 Tax=Globisporangium ul... [more]
A0A1V9ZUZ4_9STRA2.880e-1540.00ATP-binding Cassette (ABC) Superfamily (Fragment) ... [more]
A0A1V9Y4G9_9STRA7.690e-1540.00ATP-binding Cassette (ABC) Superfamily (Fragment) ... [more]
T0SCH1_SAPDV8.270e-1540.00ABC transporter domain-containing protein n=2 Tax=... [more]
A0A6A3HZA5_9STRA1.490e-1437.89ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7514contigP-wetherbeei_contig7514:116..824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFP2
PFAMsABC2_membrane,ABC_tran
Model size285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue9.81e-29
EggNOG OGsCOG1131@1|root,KOG0065@2759|Eukaryota
Ec32 ortholog descriptionpleiotropic drug resistance transporter
Ec32 orthologEc-04_001470.3
DescriptionATPase activity
Cds size279
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.7457857-UTR-P-wetherbeei_contig7514:115..1211683186985.7457857-UTR-P-wetherbeei_contig7514:115..121Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7514 116..121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.756746-CDS-P-wetherbeei_contig7514:121..2501683186985.756746-CDS-P-wetherbeei_contig7514:121..250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7514 122..250 +
1683186985.764924-CDS-P-wetherbeei_contig7514:674..8241683186985.764924-CDS-P-wetherbeei_contig7514:674..824Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7514 675..824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7514.1.1prot_P-wetherbeei_contig7514.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7514 122..824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7514.1.1

>prot_P-wetherbeei_contig7514.1.1 ID=prot_P-wetherbeei_contig7514.1.1|Name=mRNA_P-wetherbeei_contig7514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MVGFSWDDSGRRFFAFLAVLVVTNLNMSAYFRALAAVFSDFSKAQSFSGI
SVVFVVLFCGFLVPASDIPGVWIWVFWLSPLSWAFRAMAINEF
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mRNA from alignment at P-wetherbeei_contig7514:116..824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7514.1.1 ID=mRNA_P-wetherbeei_contig7514.1.1|Name=mRNA_P-wetherbeei_contig7514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=709bp|location=Sequence derived from alignment at P-wetherbeei_contig7514:116..824+ (Phaeothamnion wetherbeei SAG_119_79)
TACTCGATGGTGGGCTTCTCGTGGGACGACTCGGGGCGGCGCTTCTTCGC
CTTCCTGGCTGTCCTCGTCGTTACCAACCTCAACATGTCCGCCTACTTCC
GCGCCCTCGCCGCCGTCTTCTCCGACTTCTCCAAGGTCAGTTGGTACCGT
TCTGGTGAAGTTGTCGGATTGGATCCGGTTTTCGTTTTTTTCTGGAGTTG
CTGATCGCTTTTCTCTGATTTCGCTTTTGATCAGGCAGTGTTGGAACTCT
TGCGGTGTTTTGTTGTATAAGTTCTGCGCAAAGTATTCCCGGGGTGCGAG
GGCGGTGGCAAAACGGATCTCTCCCCAGCGTTGCACATTGTACCCGCTGA
TAACCACGTCCCCTTGTCCTTCTTTCCTTTCTTTCTTCTGCGGGTTTTCT
CCGCCCGTCGCCTCTCCCGCATCCTTTCGACATTTCTCTTGTTCCTTCCG
TCATTCCTTGCTGTTTTTCTCTCCATCTGCTTGTTGGATCTAAAAACCAA
AACAACGAACAACGCCACACAAAAACTGATGTAACGCCTGGCGGCGATGA
GAGTGACAGGCCCAGTCGTTCTCCGGCATTAGTGTCGTGTTTGTCGTGCT
CTTTTGCGGCTTCCTGGTGCCGGCCTCCGACATTCCCGGGGTGTGGATAT
GGGTCTTCTGGCTCAGCCCACTCTCGTGGGCCTTCCGTGCCATGGCCATC
AACGAGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7514:116..824+

>mRNA_P-wetherbeei_contig7514.1.1 ID=mRNA_P-wetherbeei_contig7514.1.1|Name=mRNA_P-wetherbeei_contig7514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig7514:116..824+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGGCTTCTCGTGGGACGACTCGGGGCGGCGCTTCTTCGCCTTCCT
GGCTGTCCTCGTCGTTACCAACCTCAACATGTCCGCCTACTTCCGCGCCC
TCGCCGCCGTCTTCTCCGACTTCTCCAAGGCCCAGTCGTTCTCCGGCATT
AGTGTCGTGTTTGTCGTGCTCTTTTGCGGCTTCCTGGTGCCGGCCTCCGA
CATTCCCGGGGTGTGGATATGGGTCTTCTGGCTCAGCCCACTCTCGTGGG
CCTTCCGTGCCATGGCCATCAACGAGTTC
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