mRNA_P-wetherbeei_contig751.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig751.4.1
Unique NamemRNA_P-wetherbeei_contig751.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig751.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig751contigP-wetherbeei_contig751:7436..8853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1418
Hectar predicted targeting categoryother localisation
Exons1
Cds size945
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.690017-UTR-P-wetherbeei_contig751:7435..76881683186985.690017-UTR-P-wetherbeei_contig751:7435..7688Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig751 7436..7688 -
1683186985.7139893-UTR-P-wetherbeei_contig751:8633..88531683186985.7139893-UTR-P-wetherbeei_contig751:8633..8853Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig751 8634..8853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.7023017-CDS-P-wetherbeei_contig751:7688..86331683186985.7023017-CDS-P-wetherbeei_contig751:7688..8633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig751 7689..8633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig751.4.1prot_P-wetherbeei_contig751.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig751 7689..8633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig751.4.1

>prot_P-wetherbeei_contig751.4.1 ID=prot_P-wetherbeei_contig751.4.1|Name=mRNA_P-wetherbeei_contig751.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=315bp
MSEPLSRKRPRRIIAVPSLLDLATTSIARHRSALISLSGVPEQLMAALFR
KCFHEATGSKDSSAEILSALLPFCCASSSLTAIDLDCPPLYIMTESDLLQ
LSTTLAAKPNLRDLRFSRMAFPSMLTAFVAAPGGFPPLRRLSLRGVTYLN
DALFLAFVRGCAASLQSLCISGTLLSAGTVAEAVPRLAALTELDMTDCGT
TAVDSAAVAAVAAGCPGLRRLFLKGCWRVDDAGVAAIARGLTRLELLDLG
AVPALTDLGVGALAALPELTTLSLWNARAAPAFGDPALSALARGLPALQD
LNIFGVEVKSCRCR*
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mRNA from alignment at P-wetherbeei_contig751:7436..8853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig751.4.1 ID=mRNA_P-wetherbeei_contig751.4.1|Name=mRNA_P-wetherbeei_contig751.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig751:7436..8853- (Phaeothamnion wetherbeei SAG_119_79)
CCCACATCCGAATCTCGTTGCCCTTCAAGACGCCACGAAGTCAGCTCCTT
TGGGCATGTGTTGCAAAAGCTGCATGTTGTCCTCTCTTTTCCTTTTCTAT
TGGTGAGCAGTAGCGTAGAGACGGTGGAGAGGGTGAGGTCGACAAGCGTC
GTGGATCGCAGAAACACATTTCCTCCATCTGGAAGCAGTTCAACAGCCGC
GCTCTCGTGCCCCGCCAGAGATGAGCGAGCCATTGTCGCGCAAGCGGCCG
CGACGCATAATCGCCGTACCGTCGCTTCTGGATTTGGCTACCACGTCGAT
TGCCCGGCATCGCAGCGCCCTGATTTCGCTGAGCGGGGTCCCGGAGCAGC
TGATGGCTGCCCTCTTCCGGAAGTGCTTCCATGAGGCGACGGGCTCGAAA
GATTCCTCGGCGGAGATTCTGTCGGCGCTGTTGCCCTTCTGCTGCGCGTC
AAGCTCGCTCACTGCCATCGATCTCGACTGCCCGCCGCTTTACATCATGA
CCGAGTCGGATCTCTTGCAGCTGTCTACCACGCTCGCCGCAAAGCCCAAC
CTGCGCGACCTCCGCTTCTCGCGGATGGCCTTCCCATCGATGCTCACGGC
GTTCGTGGCGGCGCCCGGCGGCTTCCCACCACTGCGCCGTCTCTCCCTCC
GGGGCGTCACCTACCTCAATGACGCGCTCTTCCTCGCCTTTGTCCGCGGC
TGCGCAGCGTCGCTGCAGTCGCTCTGCATCTCCGGGACGCTGCTGAGTGC
GGGAACCGTTGCCGAGGCGGTGCCGCGCCTCGCCGCCCTCACCGAGCTCG
ACATGACGGACTGCGGCACCACCGCCGTCGACTCCGCCGCCGTCGCTGCC
GTCGCCGCCGGCTGCCCGGGCCTCCGCCGCCTCTTCCTAAAGGGCTGCTG
GCGCGTTGACGATGCCGGCGTCGCCGCCATCGCCCGTGGCCTCACCCGGC
TCGAGCTGCTGGATCTGGGCGCCGTGCCCGCGCTGACAGACCTGGGCGTC
GGTGCGCTGGCGGCGCTGCCGGAGCTGACGACGCTGAGCCTGTGGAACGC
GCGAGCGGCTCCGGCGTTCGGGGATCCGGCGCTCAGCGCGCTTGCGCGGG
GCCTGCCGGCTCTGCAAGACCTCAACATCTTCGGTGTCGAGGTAAAGTCT
TGCCGCTGCCGTTGACGGATTGAGTGCTATGGAAAGAGGGATTAGTGCAG
CTGCAGGTGTCATTCCTTCATATGAGCGTCCGCTTTTTTTGAAGTCTTAT
GAGGTTTGCGGATTTCTTCTGATGGAGACGTTGAACGATTCTTTTCTTAC
ATGCTGCACTTGTAGCCTTCGTCTGCATGCAGGTGAAGCGCGAAACGTGG
GAACTTTTTGCGACGCAGCGGGGCGTGCGCACGGTTCACCACTGTTATCC
CGGGCCGGGAAACCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig751:7436..8853-

>mRNA_P-wetherbeei_contig751.4.1 ID=mRNA_P-wetherbeei_contig751.4.1|Name=mRNA_P-wetherbeei_contig751.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig751:7436..8853- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAGCCATTGTCGCGCAAGCGGCCGCGACGCATAATCGCCGTACC
GTCGCTTCTGGATTTGGCTACCACGTCGATTGCCCGGCATCGCAGCGCCC
TGATTTCGCTGAGCGGGGTCCCGGAGCAGCTGATGGCTGCCCTCTTCCGG
AAGTGCTTCCATGAGGCGACGGGCTCGAAAGATTCCTCGGCGGAGATTCT
GTCGGCGCTGTTGCCCTTCTGCTGCGCGTCAAGCTCGCTCACTGCCATCG
ATCTCGACTGCCCGCCGCTTTACATCATGACCGAGTCGGATCTCTTGCAG
CTGTCTACCACGCTCGCCGCAAAGCCCAACCTGCGCGACCTCCGCTTCTC
GCGGATGGCCTTCCCATCGATGCTCACGGCGTTCGTGGCGGCGCCCGGCG
GCTTCCCACCACTGCGCCGTCTCTCCCTCCGGGGCGTCACCTACCTCAAT
GACGCGCTCTTCCTCGCCTTTGTCCGCGGCTGCGCAGCGTCGCTGCAGTC
GCTCTGCATCTCCGGGACGCTGCTGAGTGCGGGAACCGTTGCCGAGGCGG
TGCCGCGCCTCGCCGCCCTCACCGAGCTCGACATGACGGACTGCGGCACC
ACCGCCGTCGACTCCGCCGCCGTCGCTGCCGTCGCCGCCGGCTGCCCGGG
CCTCCGCCGCCTCTTCCTAAAGGGCTGCTGGCGCGTTGACGATGCCGGCG
TCGCCGCCATCGCCCGTGGCCTCACCCGGCTCGAGCTGCTGGATCTGGGC
GCCGTGCCCGCGCTGACAGACCTGGGCGTCGGTGCGCTGGCGGCGCTGCC
GGAGCTGACGACGCTGAGCCTGTGGAACGCGCGAGCGGCTCCGGCGTTCG
GGGATCCGGCGCTCAGCGCGCTTGCGCGGGGCCTGCCGGCTCTGCAAGAC
CTCAACATCTTCGGTGTCGAGGTAAAGTCTTGCCGCTGCCGTTGA
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