mRNA_P-wetherbeei_contig75.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig75.4.1
Unique NamemRNA_P-wetherbeei_contig75.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig75.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig75contigP-wetherbeei_contig75:6548..7950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size971
Hectar predicted targeting categoryother localisation
Exons3
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.905584-UTR-P-wetherbeei_contig75:6547..66531683186984.905584-UTR-P-wetherbeei_contig75:6547..6653Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig75 6548..6653 +
1683186984.9148943-UTR-P-wetherbeei_contig75:6842..68661683186984.9148943-UTR-P-wetherbeei_contig75:6842..6866Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig75 6843..6866 +
1683186984.9412534-UTR-P-wetherbeei_contig75:7694..79501683186984.9412534-UTR-P-wetherbeei_contig75:7694..7950Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig75 7695..7950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.923229-CDS-P-wetherbeei_contig75:6866..72731683186984.923229-CDS-P-wetherbeei_contig75:6866..7273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig75 6867..7273 +
1683186984.9310982-CDS-P-wetherbeei_contig75:7516..76941683186984.9310982-CDS-P-wetherbeei_contig75:7516..7694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig75 7517..7694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig75.4.1prot_P-wetherbeei_contig75.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig75 6867..7694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig75.4.1

>prot_P-wetherbeei_contig75.4.1 ID=prot_P-wetherbeei_contig75.4.1|Name=mRNA_P-wetherbeei_contig75.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MTNGDTIYVGDKELSVLFFRELSSSRRRLLPLTNGDGSILTGPAAAFLLA
DEKAGFFEGQQQRDDGNDRELEGAGAGPRRRLTPCSEGQWVLDRMAIKTA
TVRTTEYRTYQEDATSSFYTNADCAATPNSVTTTKWIYFDMSNSETVDGT
ASTVTITCAEETDTEGTNWASRDSAASWWLITALLAVLSAAWAH*
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mRNA from alignment at P-wetherbeei_contig75:6548..7950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig75.4.1 ID=mRNA_P-wetherbeei_contig75.4.1|Name=mRNA_P-wetherbeei_contig75.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1403bp|location=Sequence derived from alignment at P-wetherbeei_contig75:6548..7950+ (Phaeothamnion wetherbeei SAG_119_79)
AATCTTCCGCAGTGCCGCAGCTGTGGCTATAGCGCTTTCCGGACTGCAAG
GAGTTGCTTCGACGTGTCCCTACGGCTACGTTGTAGATGCTCCTGATGAT
AGCTTGGTGAGCGTAGGCAGCTTTAGTAAAAAAGCTTTCCGGAGCTCACT
GCAGTGCTTTCCGATTAGACAGTTCACTCTTCTCGACAGCTCGACCTCAC
CTCGCTTCTTTTTCTTTTTCTTTGTTCTTGGCTTAAAGTCGCATCCTCCC
CTTTCCTTCCTGCTCCTTCCCCCTTGACGCCTCGTGGTGCCACAGTCCGA
CACCTACACCGCCACCGCCATGACCAACGGCGACACCATCTACGTCGGCG
ACAAAGAGCTCAGCGTTCTCTTCTTCCGCGAACTGAGCTCCTCCCGTCGG
CGGCTCCTCCCGCTGACCAATGGCGACGGCAGCATACTCACGGGCCCCGC
CGCCGCCTTTCTGCTGGCGGACGAGAAGGCGGGCTTCTTCGAGGGACAGC
AACAGCGGGACGACGGGAACGACAGGGAGCTGGAAGGAGCGGGAGCCGGA
CCGCGGCGGCGCCTGACTCCGTGCAGCGAGGGCCAGTGGGTCTTGGATCG
CATGGCGATCAAAACCGCCACAGTCCGCACGACGGAGTACCGAACCTACC
AGGAAGACGCCACCTCGAGCTTCTATACCAACGCCGACTGCGCCGCGACG
CCGAACTCCGTCACGACGACCAAATGGTGAGCAATCAAGGTCTGGCTTTG
GCGATCCCACCGTGACCGTTTTCTTACTCCCCCGCCTCGGTTTTTGCAGC
GTTTTTCTGCGGACAAACGGACACGAGAGCACTTTCGGTCGGCATGCTCT
TTGCACAGCGATGCTCGCCAACTCCATAGTCATGTTATTAATTGCCGCAA
CATCGCCTAAACCTCTTTATTTAACACCCTCCTTGCCGAACCGCTAAATA
TTTCGGACTCGCTCGGTAGGATCTACTTTGACATGTCAAACTCGGAAACC
GTTGATGGCACCGCGAGCACTGTGACCATCACTTGCGCCGAAGAGACTGA
TACCGAAGGCACAAACTGGGCTTCCCGGGACAGTGCCGCCAGTTGGTGGC
TCATCACGGCACTGCTGGCGGTGCTCTCCGCCGCCTGGGCACACTAGCTG
CTGCGGGTATGAGCCGGAGCCGGCCGGATGCCAGATGGATGGCCGCCGGA
GTAAGTGGAATAAGTGGGTTAAGTGTGGTCACTGGACTATCGTCGAGCGT
TTCACACTGCGATAACACGAGTAAAATGCGCGGGCCCACGCATGGGCTTG
CTTGCTTTTGCTCATCATTCCACGGAAGATATGGTCCTGCAGTGTAAGAG
GCGGTTGCGGGGTACCACATTTGGAACGCTCATAAAGAGAGTCGTGTATA
TAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig75:6548..7950+

>mRNA_P-wetherbeei_contig75.4.1 ID=mRNA_P-wetherbeei_contig75.4.1|Name=mRNA_P-wetherbeei_contig75.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig75:6548..7950+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAACGGCGACACCATCTACGTCGGCGACAAAGAGCTCAGCGTTCT
CTTCTTCCGCGAACTGAGCTCCTCCCGTCGGCGGCTCCTCCCGCTGACCA
ATGGCGACGGCAGCATACTCACGGGCCCCGCCGCCGCCTTTCTGCTGGCG
GACGAGAAGGCGGGCTTCTTCGAGGGACAGCAACAGCGGGACGACGGGAA
CGACAGGGAGCTGGAAGGAGCGGGAGCCGGACCGCGGCGGCGCCTGACTC
CGTGCAGCGAGGGCCAGTGGGTCTTGGATCGCATGGCGATCAAAACCGCC
ACAGTCCGCACGACGGAGTACCGAACCTACCAGGAAGACGCCACCTCGAG
CTTCTATACCAACGCCGACTGCGCCGCGACGCCGAACTCCGTCACGACGA
CCAAATGGATCTACTTTGACATGTCAAACTCGGAAACCGTTGATGGCACC
GCGAGCACTGTGACCATCACTTGCGCCGAAGAGACTGATACCGAAGGCAC
AAACTGGGCTTCCCGGGACAGTGCCGCCAGTTGGTGGCTCATCACGGCAC
TGCTGGCGGTGCTCTCCGCCGCCTGGGCACACTAG
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