mRNA_P-wetherbeei_contig7492.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7492.3.1
Unique NamemRNA_P-wetherbeei_contig7492.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: F0YEV1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV1_AURAN)

HSP 1 Score: 193 bits (490), Expect = 4.410e-60
Identity = 95/153 (62.09%), Postives = 115/153 (75.16%), Query Frame = 3 
Query:   24 RDPRWIEDQKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            RD  W  + K++IREAF LFDK+RKGCVIQ+EV TI+R LG YPTERA+VKEILP+M   +    V   RFE K LE+LA   WEPD E+V+LQA R  DE+G+GYIE  RLRE L TKGTPFREKE+DAFL VA+D +  G +Y EDY+A+L
Sbjct:    6 RDENWYVETKKKIREAFQLFDKDRKGCVIQEEVSTIMRYLGAYPTERAMVKEILPDMMEDEPSAFVKYERFEPKMLEILAEGDWEPDSEEVLLQAFRVFDEDGKGYIEANRLREALITKGTPFREKEIDAFLSVAKDLET-GHIYYEDYVALL 157
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: A0A7S2UZH6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZH6_9STRA)

HSP 1 Score: 190 bits (483), Expect = 7.040e-59
Identity = 90/151 (59.60%), Postives = 116/151 (76.82%), Query Frame = 3 
Query:   36 WIEDQKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVLGE 488
            W+ + K++IR+AFALFDK++KGCVIQ+EV TI+R LG +PTERA+VKEILPE+Q  +    V   RFE K LE+LAS  W+PDP D++LQA RTLD E  GYI+  R+RELL TKGT FR+KE+DAF+ VA+D D   R+Y EDY+A L +
Sbjct:   18 WLLETKQKIRDAFALFDKDKKGCVIQEEVSTIMRYLGAFPTERAMVKEILPEIQEDEPTAFVSYERFESKMLEILASHEWDPDPPDMILQAFRTLDPEKNGYIDAARMRELLVTKGTAFRDKEIDAFMSVAKDQDT-SRIYYEDYVARLAD 167
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: A0A7S3YMG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMG9_HETAK)

HSP 1 Score: 186 bits (473), Expect = 1.260e-57
Identity = 88/146 (60.27%), Postives = 116/146 (79.45%), Query Frame = 3 
Query:   45 DQKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            + K++I++AF+LFDKE+K CVIQ+EV TI+R LG YPTE+A+VKEILPE+Q  +    V   RFE+K LE+LAS  W+PDP DV+LQA RTLD +G GYI+  R++ELL TKGTPFREKE+DAF+ VA+D D   R+Y EDY+A++
Sbjct:    2 ETKQKIKDAFSLFDKEKKFCVIQEEVSTIMRYLGAYPTEKAMVKEILPEIQDDEPTAFVQYDRFEQKMLEILASHEWDPDPPDVILQAFRTLDPDGLGYIDASRMKELLVTKGTPFREKELDAFMTVAKDMDT-ARIYYEDYVALM 146
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: A0A6S8RCU5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RCU5_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.290e-57
Identity = 90/153 (58.82%), Postives = 113/153 (73.86%), Query Frame = 3 
Query:   24 RDPRWIEDQKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            RD  W  + K+RIREAF LFDK+RKGCV+Q+EV TI+R LG YPTERA+VKEILP+M G +    V    FE K LELLA   +EPD ++ +LQ  R  DEEG GY+E  +LRE L TKGTPFREKE++AF+ VA+D +  GR+Y EDY+A+L
Sbjct:    5 RDETWYLETKKRIREAFQLFDKDRKGCVVQEEVATIMRYLGAYPTERAVVKEILPDMMGEEASAFVKYETFEPKMLELLAGGEFEPDSDETLLQCFRAFDEEGRGYVEATKLREALITKGTPFREKEIEAFMEVAKDEET-GRIYYEDYVALL 156
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: D8LB32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB32_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 3.570e-56
Identity = 85/153 (55.56%), Postives = 118/153 (77.12%), Query Frame = 3 
Query:   24 RDPRWIEDQKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            +D  W+E Q++RI+EAFALFDK++KG V+Q+EV TI+R LG YP+E+A+ +E+LP+MQG D    V  + FE K LE+LASR W+PDP +V+L+A R +DE+G GYIE  ++ ELL +KGTPFR KE++AFL VA+D +  G +Y EDY+A L
Sbjct:    5 QDEHWMEAQRKRIKEAFALFDKDKKGSVVQEEVSTIMRYLGAYPSEKAMTQEVLPDMQGDDVTAAVTYASFETKMLEILASRAWDPDPPEVLLRAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAKDTET-GHIYFEDYVASL 156
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: A0A5D6YIQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIQ5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.120e-51
Identity = 83/145 (57.24%), Postives = 109/145 (75.17%), Query Frame = 3 
Query:   48 QKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            +K RIR AF +FDK++KGCV+Q+EV TI+R LG YP+E+ ++K+ILPEMQ  +    V   RFE+K LE+L +  +EPD ++ +L A RT+D E  GYIE   +RELL TKGTPFREKE++AFLGVA+DP   GR+Y EDYIAV 
Sbjct:   24 RKLRIRAAFDMFDKDKKGCVVQEEVGTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVTFERFEKKMLEVLYTNEYEPDTDEALLAAFRTIDAEKRGYIEADTMRELLITKGTPFREKELEAFLGVAKDPQT-GRIYYEDYIAVF 167
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: A0A3R7HE12_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=A0A3R7HE12_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.350e-51
Identity = 86/148 (58.11%), Postives = 111/148 (75.00%), Query Frame = 3 
Query:   48 QKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVLGES 491
            +K RIR AF +FDK++KGCVIQ+EV TI+R LG YP+E+ ++K+ILPEMQ  +    V   RFE+K LE+L +  +EPD ++ VL A R +D E +GYIE   LRELLTTKGTPFREKEM+AFL  A+DP   GRVY EDYIA+L ++
Sbjct:   50 RKLRIRVAFDMFDKDKKGCVIQEEVSTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVAYDRFEKKMLEVLYTNEYEPDTDETVLAAFRVIDTEKKGYIEAEVLRELLTTKGTPFREKEMEAFLAAAKDPPT-GRVYYEDYIALLTQA 196
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: A0A2D4CC36_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC36_PYTIN)

HSP 1 Score: 166 bits (420), Expect = 2.260e-49
Identity = 81/145 (55.86%), Postives = 107/145 (73.79%), Query Frame = 3 
Query:   48 QKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            +K RIR+AF +FDKE+KGCVIQ+EV TI+R LG YP+E+ ++K+ILPEMQ  +    V   RFE+K LE++ +  + PD ++ +L A R +D E  GYIE   +RELL TKGTPFRE EM+AFL VA+DP   GR+Y EDYIA+L
Sbjct:   17 RKARIRQAFDMFDKEKKGCVIQEEVSTIMRFLGAYPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVMYTNEYAPDTDETLLAAFRVIDTEKRGYIEADVMRELLITKGTPFREXEMEAFLSVAKDPQT-GRIYYEDYIALL 160
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BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: A0A8K1C2D7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2D7_PYTOL)

HSP 1 Score: 165 bits (417), Expect = 6.240e-49
Identity = 81/145 (55.86%), Postives = 108/145 (74.48%), Query Frame = 3 
Query:   48 QKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            +K RIR AF +FDKE+KGCVIQ+EV TI+R LG +P+E+ ++K+ILPEMQ  +    V   RFE+K LE++ +  + PD ++ +L A R LD + +GYIE   +RELL TKGTPFREKEM+AFL VA+DP   GR+Y EDYIA+L
Sbjct:   15 RKARIRLAFDMFDKEKKGCVIQEEVSTIMRYLGAFPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVMYTNEYAPDTDETLLAAFRVLDADKKGYIEADVMRELLITKGTPFREKEMEAFLSVAKDPQT-GRIYYEDYIALL 158
[Close]
BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Match: K3XBG4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBG4_GLOUD)

HSP 1 Score: 165 bits (417), Expect = 7.750e-49
Identity = 82/146 (56.16%), Postives = 108/146 (73.97%), Query Frame = 3 
Query:   45 DQKRRIREAFALFDKERKGCVIQDEVPTILRCLGIYPTERALVKEILPEMQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGYIEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVL 482
            ++K RIR AF +FDK++KGCVIQ+EV TI+R LG YP+E+ ++K+ILPEMQ  +    V   RFE+K LE+L +  + PD ++ +L A R +D E +GYIE   +RELL TKGTPFREKEM+AFL VA+D    GR+Y EDYIAVL
Sbjct:   22 NRKLRIRAAFDMFDKDKKGCVIQEEVSTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVLYTNEYAPDTDETLLAAFRVIDAEKKGYIEADIMRELLITKGTPFREKEMEAFLSVAKDAPT-GRIYYEDYIAVL 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7492.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YEV1_AURAN4.410e-6062.09Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2UZH6_9STRA7.040e-5959.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YMG9_HETAK1.260e-5760.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S8RCU5_9STRA3.290e-5758.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LB32_ECTSI3.570e-5655.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6YIQ5_9STRA2.120e-5157.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3R7HE12_9STRA2.350e-5158.11Uncharacterized protein (Fragment) n=5 Tax=Phytoph... [more]
A0A2D4CC36_PYTIN2.260e-4955.86Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1C2D7_PYTOL6.240e-4955.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XBG4_GLOUD7.750e-4956.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7492contigP-wetherbeei_contig7492:1943..2991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009038894.1
Preferred nameEFCAB2
PFAMsEF-hand_7,EFhand_Ca_insen
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0097014,GO:0099568,GO:0120025,GO:0120038
Exons3
Evalue3.23e-29
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-27_005420.1
DescriptionCalcium-binding protein
Cds size303
COG categoryDTZ
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.5730407-UTR-P-wetherbeei_contig7492:1942..19851683186984.5730407-UTR-P-wetherbeei_contig7492:1942..1985Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7492 1943..1985 -
1683186984.6083171-UTR-P-wetherbeei_contig7492:2672..27441683186984.6083171-UTR-P-wetherbeei_contig7492:2672..2744Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7492 2673..2744 -
1683186984.6170247-UTR-P-wetherbeei_contig7492:2872..29911683186984.6170247-UTR-P-wetherbeei_contig7492:2872..2991Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7492 2873..2991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.5856738-CDS-P-wetherbeei_contig7492:1985..21741683186984.5856738-CDS-P-wetherbeei_contig7492:1985..2174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7492 1986..2174 -
1683186984.5992482-CDS-P-wetherbeei_contig7492:2558..26721683186984.5992482-CDS-P-wetherbeei_contig7492:2558..2672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7492 2559..2672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7492.3.1prot_P-wetherbeei_contig7492.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7492 1986..2672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7492.3.1

>prot_P-wetherbeei_contig7492.3.1 ID=prot_P-wetherbeei_contig7492.3.1|Name=mRNA_P-wetherbeei_contig7492.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MQGGDDMPIVLASRFEEKALELLASRHWEPDPEDVVLQALRTLDEEGEGY
IEVVRLRELLTTKGTPFREKEMDAFLGVARDPDNMGRVYCEDYIAVLGES
*
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mRNA from alignment at P-wetherbeei_contig7492:1943..2991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7492.3.1 ID=mRNA_P-wetherbeei_contig7492.3.1|Name=mRNA_P-wetherbeei_contig7492.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1049bp|location=Sequence derived from alignment at P-wetherbeei_contig7492:1943..2991- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCCGGATCCACCGACTGGGCGCGACCCACGATGGATCGAAGATCAA
AAGCGTCGGATCCGCGAGGCTTTCGCGCTCTTTGATAAGGAAAGAAAAGG
CTGCGTGATCCAGGATGAGGTGAGTGGCAAGGCAGATTCGCTATTTCCTG
CCCATTTCCTCTCGTCGCCGTTCCTTCTAGTGGCAAAGTCTTTCCCTAAA
GCGTGCTCTAGCTCCTCTCTCCTTGCCGCCTCTCGCAACCACGGTAGGTG
CCGACGATCTTGCGCTGCCTTGGCATCTACCCGACGGAGCGCGCGCTCGT
TAAAGAGATCCTGCCGGAGATGCAGGGCGGTGACGACATGCCAATTGTGT
TGGCGTCACGCTTTGAGGAAAAGGCGCTGGAGCTGCTTGCGTCACGGCAT
TGGGAGCCGGATCCTGAGGACGTCGTGTTGCAGGTGAGGCACCAAAGACA
AGAACAGGCGCCGTTCGGTCGAGCAACTAGGGACTCGCGGCGGTTGTTGC
TTGCTGCGTGCATAACAAAGAGCGTATTTTGATAGGAAGCCGCGATGGCA
AGAATGCACCAAGCTCTAGTAGGGACTATGAGGACGTCTCGCTTTTCCTT
TCGTCACAAATTTACTCCTTCCCTAAAACCGTCTTGCATCAGTCTAAAGG
CGCTTTCCAGGTTGGTCTGATACCTTTCCCTCGCTCTGGTCCACGAAAAT
TCATCAATGAAACACCCCCCCTCGACGCCTGCCACAGCCATTCTTTACCA
TCCTGCTGCCGCCAACCCCTTCTGCAACCGCCCGCTTATCCGCCGGCCGC
TCGTCCTGGGCAACCAGGCGCTGCGCACGCTGGACGAGGAAGGGGAGGGG
TACATTGAAGTGGTGCGGCTGCGGGAGCTGCTGACGACAAAGGGCACGCC
CTTTCGGGAGAAGGAGATGGACGCCTTCCTGGGCGTAGCGCGGGACCCCG
ACAACATGGGGCGGGTCTACTGCGAGGACTACATCGCCGTCCTGGGCGAG
AGCTAACTTCGCGATGCAGGAGAGTCGGGGAGCGAGGCCTGGACGGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7492:1943..2991-

>mRNA_P-wetherbeei_contig7492.3.1 ID=mRNA_P-wetherbeei_contig7492.3.1|Name=mRNA_P-wetherbeei_contig7492.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig7492:1943..2991- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCGGTGACGACATGCCAATTGTGTTGGCGTCACGCTTTGAGGA
AAAGGCGCTGGAGCTGCTTGCGTCACGGCATTGGGAGCCGGATCCTGAGG
ACGTCGTGTTGCAGGCGCTGCGCACGCTGGACGAGGAAGGGGAGGGGTAC
ATTGAAGTGGTGCGGCTGCGGGAGCTGCTGACGACAAAGGGCACGCCCTT
TCGGGAGAAGGAGATGGACGCCTTCCTGGGCGTAGCGCGGGACCCCGACA
ACATGGGGCGGGTCTACTGCGAGGACTACATCGCCGTCCTGGGCGAGAGC
TAA
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