mRNA_P-wetherbeei_contig7478.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7478.1.2
Unique NamemRNA_P-wetherbeei_contig7478.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A0A2R5GWM1_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWM1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.820e-27
Identity = 122/371 (32.88%), Postives = 175/371 (47.17%), Query Frame = 1
Query:  322 ILLCFCNPRHSNHLRLQAEERIIRQAI---KNGRYRDSITVTVLPAATVDDLSRALLEER-----YDVLHFSGHADPQTNALSVRLARLRDLHGAEALEAVRNDPAAVSALEKAAATLLSQLEEL------------LADEARCGGGPDCGSEA--------------------AHIEVSIP---------DLMAGFERGDPDRCAAAVVAGGSGASPVPAPSHM--------------VPTGGYGLT--CRFSTSELLDAGVGALAFE-GEGGHLCFVRANDFAALLSAHSPQLRCAVLNACGSGLQC--LLATQSIPLCIGMAGQITDHDAAAFSGGFYDALAAGAGVDKAFAEGKRRIGLHALDHFHP 1230
            +L+   +P     L+LQAEER IRQ+I   ++GR+ D I + VLPAAT DDL++ LL +      YDV+HFSGH D   + + +  + L   HG E +   ++  A+VS + + AA +   LE              L+  AR     +   EA                    A  +  IP           +  F +        + +AG  G S    P                 +P GG   T     + S++LDAGVG+LAFE G G  + FV A  FA L+S ++  L+C +LNAC S L C  LLA   IPL I   G+++D  A  FS GFY+ALA G  V++AF EG+ R+ ++    +HP
Sbjct:   29 VLMVSSDPSAHQRLKLQAEERAIRQSISLAEHGRHVD-INLDVLPAATADDLAKRLLWKSSQGSSYDVIHFSGHCDVDNHLVRLIFSELHRQHGPEVVRRFQSSSASVSGIHELAAQVTKHLESQAMYFMDEIDVPSLSSSARSITAAESSIEAVVETHSKSRSLTPDFRLIHRAQTKAIIPADAEQRVGEQRLLVFSQASEGPADPSQMAGNGGPSRPGTPDSTSVEVWNDHDPLVLRLPDGGPHATKDIVLTKSQILDAGVGSLAFEMGGGPGMNFVSAKAFADLVSPYALDLQCILLNACHSQLACEQLLAV-GIPLAICARGKMSDASALHFSRGFYEALAYGESVERAFVEGQNRMSVNDRRRYHP 397          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A0A7S3Y6Q0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Q0_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 5.040e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  424 SITVTVLPAATVDDLSRALLEERYDVLHFSGHADPQTNALSVRLARLRDLHGAEALEAVRNDPAAVSALEKAAATLLSQLEE 669
            ++ V VLPAATV DL+RALL   Y V+ FSGHADP+   +   LA     HG  A  A+R DP A++ +  AA  +++ L +
Sbjct:    5 AVVVDVLPAATVGDLARALLAREYQVVQFSGHADPEAALVRRLLAHAHRAHGRRAAHAIRKDPGAITRMRHAAQNVINGLSK 86          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A3ZP15_9BACT (CHAT domain-containing protein n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZP15_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 4.220e-10
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  310 PHLRILLCFCNPRHSNHLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGH 519
            P   ILL   NPR ++ LR   E+R +R++I+  R+RD I +  L AAT+DDL RALL+  +D++HFSGH
Sbjct:    2 PDTNILLVCANPRGTDSLRTAEEDRTLRESIQLSRHRDKINIRTLNAATIDDLRRALLDNTFDIVHFSGH 71          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A0A7S0IRS2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IRS2_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 7.070e-10
Identity = 29/69 (42.03%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  316 LRILLCFCNPRHSNHLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGHA 522
            +++L  FCNPR ++ LRLQAE+R++++ +      D   + + PAAT+DD+   LL  R+D++HFSGH+
Sbjct:   22 VKVLALFCNPRGTDSLRLQAEQRVLQRCLPPFPGVDGEQLAICPAATLDDVRVTLLSTRFDIIHFSGHS 90          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: H5YLL3_9BRAD (CHAT domain-containing protein n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=H5YLL3_9BRAD)

HSP 1 Score: 73.2 bits (178), Expect = 7.670e-10
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  316 LRILLCFCNPRHSN-HLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGHA--------DPQTNALSVRLARLRDL 573
            +R+L   C+P  +   L L AE+R I++A+K   +   IT+ +LP+AT DDL R+LLE RYD++HFSGHA        D   NA+ V ++ + +L
Sbjct:  385 VRVLFVSCDPEGTGVRLNLDAEQRAIKEALKLSPHGGKITLELLPSATTDDLRRSLLENRYDIVHFSGHANRKVLVFADSANNAVEVPISAIAEL 479          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A0A238YMZ4_9ACTN (CHAT domain-containing protein n=1 Tax=Actinoplanes regularis TaxID=52697 RepID=A0A238YMZ4_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 1.080e-9
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  310 PHLRILLCFCNPRHSNHLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGH 519
            P L ILL   NPR S  LR   E+R +RQ+I+    RD I +  L A T+DDL RALL  R+D++HFSGH
Sbjct:  416 PRLNILLACANPRGSEALRTGEEDRTLRQSIRLSAERDRIDIETLNAVTIDDLRRALLNRRFDIVHFSGH 485          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: UPI0012FE6016 (CHAT domain-containing protein n=1 Tax=Rhizobium meliloti TaxID=382 RepID=UPI0012FE6016)

HSP 1 Score: 72.4 bits (176), Expect = 1.380e-9
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  292 DLVVQQPHLRILLCFCNPRH-SNHLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGHADPQ 531
            DLV     +R+L  FCNP   ++ L+L AE+R I+++++ G + +   +  LPAAT +DL RALL E++D++HFSGHA  +
Sbjct:  379 DLVEILDTVRVLFVFCNPETGTDQLKLHAEQRAIKESLRRGPHSNKFKLDDLPAATTNDLRRALLSEQFDLIHFSGHASEE 459          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A0A455SMT7_9CHLR (Uncharacterized protein n=1 Tax=Thermosporothrix sp. COM3 TaxID=2490863 RepID=A0A455SMT7_9CHLR)

HSP 1 Score: 69.3 bits (168), Expect = 1.600e-8
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  310 PHL-RILLCFCNPRHSNHLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGHAD 525
            PH   +L  F NP  ++ LRL  EER IR AI+  ++RD I +    AAT++DLSRALL+E Y ++H +GH +
Sbjct:  261 PHTTNVLAVFANPPGTDRLRLDREERAIRAAIERSKFRDHIHLETRAAATLEDLSRALLDETYQIIHIAGHGN 333          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A0A2S9YD74_9DELT (CHAT domain protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YD74_9DELT)

HSP 1 Score: 66.6 bits (161), Expect = 7.110e-8
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  316 LRILLCFCNPRHSNHLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGHADPQ 531
            +RIL    NP     L L  E+R++R+A+   R+RD I + V  A +  DLSRALLE  +D+LHF+GH  P+
Sbjct:  285 IRILFVSANPPDMEGLALDREQRVVREAVTRARHRDRIELEVRSAVSFVDLSRALLEGEFDILHFAGHGAPK 356          
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Match: A0A402B8B2_9CHLR (Uncharacterized protein n=1 Tax=Dictyobacter alpinus TaxID=2014873 RepID=A0A402B8B2_9CHLR)

HSP 1 Score: 67.0 bits (162), Expect = 8.440e-8
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  316 LRILLCFCNPRHSNHLRLQAEERIIRQAIKNGRYRDSITVTVLPAATVDDLSRALLEERYDVLHFSGHADPQ 531
            +R+L  F NP  ++ LRL  EER I  AI+  ++RD+I +   PAAT  DLSRALL E++ ++H + H   Q
Sbjct:  274 IRVLAVFANPMGTSRLRLDIEERTIHNAIEISKHRDNILLETRPAATFRDLSRALLNEKFQIVHIASHGHGQ 345          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7478.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A2R5GWM1_9STRA2.820e-2732.88Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S3Y6Q0_HETAK5.040e-1143.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A3ZP15_9BACT4.220e-1048.57CHAT domain-containing protein n=1 Tax=Blastopirel... [more]
A0A7S0IRS2_9EUKA7.070e-1042.03Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
H5YLL3_9BRAD7.670e-1041.05CHAT domain-containing protein n=3 Tax=Bradyrhizob... [more]
A0A238YMZ4_9ACTN1.080e-951.43CHAT domain-containing protein n=1 Tax=Actinoplane... [more]
UPI0012FE60161.380e-943.21CHAT domain-containing protein n=1 Tax=Rhizobium m... [more]
A0A455SMT7_9CHLR1.600e-846.58Uncharacterized protein n=1 Tax=Thermosporothrix s... [more]
A0A2S9YD74_9DELT7.110e-844.44CHAT domain protein n=1 Tax=Enhygromyxa salina Tax... [more]
A0A402B8B2_9CHLR8.440e-844.44Uncharacterized protein n=1 Tax=Dictyobacter alpin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7478contigP-wetherbeei_contig7478:2..3023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog314230.DSM3645_27947
PFAMsCHAT
Model size1925
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.91e-11
EggNOG OGsCOG1672@1|root,COG1672@2|Bacteria,2J40F@203682|Planctomycetes
DescriptionCHAT domain
Cds size1923
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186983.644915-CDS-P-wetherbeei_contig7478:2..731683186983.644915-CDS-P-wetherbeei_contig7478:2..73Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7478 3..73 -
1683186983.6566007-CDS-P-wetherbeei_contig7478:829..16711683186983.6566007-CDS-P-wetherbeei_contig7478:829..1671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7478 830..1671 -
1683186983.6665945-CDS-P-wetherbeei_contig7478:1854..26471683186983.6665945-CDS-P-wetherbeei_contig7478:1854..2647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7478 1855..2647 -
1683186983.6766262-CDS-P-wetherbeei_contig7478:2806..30231683186983.6766262-CDS-P-wetherbeei_contig7478:2806..3023Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7478 2807..3023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7478.1.2prot_P-wetherbeei_contig7478.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7478 3..3023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7478.1.2

>prot_P-wetherbeei_contig7478.1.2 ID=prot_P-wetherbeei_contig7478.1.2|Name=mRNA_P-wetherbeei_contig7478.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=641bp
GERNDVVVARLRTGSLSPTEDGSFSPTSDSSDASSESSGLEDSAPTTALD
GPQPVEEGLGFELTGEEPSMTPSLRRLAAPAVASTVASTPTAVAAERDLV
VQQPHLRILLCFCNPRHSNHLRLQAEERIIRQAIKNGRYRDSITVTVLPA
ATVDDLSRALLEERYDVLHFSGHADPQTNALSVRLARLRDLHGAEALEAV
RNDPAAVSALEKAAATLLSQLEELLADEARCGGGPDCGSEAAHIEVSIPD
LMAGFERGDPDRCAAAVVAGGSGASPVPAPSHMVPTGGYGLTCRFSTSEL
LDAGVGALAFEGEGGHLCFVRANDFAALLSAHSPQLRCAVLNACGSGLQC
LLATQSIPLCIGMAGQITDHDAAAFSGGFYDALAAGAGVDKAFAEGKRRI
GLHALDHFHPLHAHQSGVHVAMVRPSPLVSLFKSAALSAGSGSGAALARR
ADGPLCIAAGGSRSAASNSGGQEEWASHPMLGPLIGLEVASAAVPSAMVG
TAAAAASCSCDGQGPSLEEENAKLKQLIQYGMRLLSEKDVAHRRLEAQLA
AAQRHRAAEADVRLLEARCGEASRQQPSASQPLRRRSYSKVSDAADVGSG
TGSGGGGGGIGAGGGSGAAAAGRRESVPEKGRWPERGLGFW
back to top

mRNA from alignment at P-wetherbeei_contig7478:2..3023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7478.1.2 ID=mRNA_P-wetherbeei_contig7478.1.2|Name=mRNA_P-wetherbeei_contig7478.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3022bp|location=Sequence derived from alignment at P-wetherbeei_contig7478:2..3023- (Phaeothamnion wetherbeei SAG_119_79)
GGGGAAAGAAACGACGTGGTCGTTGCTCGATTGCGGACGGGCTCCCTTTC TCCCACTGAGGATGGGTCGTTTTCTCCGACTTCGGATAGCTCCGACGCCT CGTCAGAGTCATCTGGCTTGGAGGATAGCGCGCCCACCACTGCCCTGGAC GGTCCTCAACCCGTGGAGGAAGGGCTGGGCTTCGAACTGACGGGAGAAGA ACCCTCGATGACACCAAGTGAGTCTGCGTTAGATGTAAAGTGGAATGATA AGATGCGCTGCGAAGATATGATAGGGCTTTCCAGGCACTGTGAAAGTTCG CCCGTTTTCGAAAGGTTTTCATTTCATGGCCTACCTCTTAGGTACCGTCT TCTTCGCAATGGGTCACCAAAAACAGGCCTACGAAGACTGGCGGCGCCGG CAGTGGCGTCGACGGTGGCATCGACGCCGACGGCGGTGGCTGCGGAGCGG GACCTGGTGGTGCAGCAGCCGCACCTCCGCATCCTCTTGTGCTTCTGCAA TCCGAGGCACAGCAACCACCTGCGACTGCAGGCCGAAGAGCGCATCATAC GTCAGGCCATCAAGAACGGTCGCTATCGCGACTCCATTACAGTCACCGTG CTGCCGGCTGCGACCGTCGATGATCTCTCTCGAGCTTTGCTGGAGGAGAG GTACGATGTGCTGCATTTCTCAGGCCACGCAGACCCGCAGACGAACGCCC TGTCCGTCCGGTTAGCCCGACTCCGCGACCTCCACGGGGCGGAGGCCCTC GAGGCGGTGCGCAACGACCCCGCGGCGGTGTCGGCGTTGGAGAAGGCGGC CGCGACGCTCCTCAGCCAGCTTGAGGAGCTCTTGGCCGACGAGGCCCGCT GCGGCGGCGGGCCTGACTGCGGAAGCGAGGCCGCGCACATTGAAGTCAGC ATTCCCGACTTGATGGCGGGCTTTGAGCGCGGCGACCCCGACCGTTGCGC AGCAGCGGTGGTAGCCGGCGGCAGTGGTGCTTCTCCGGTGCCGGCCCCGT CGCACATGGTCCCCACGGGTGGCTACGGGCTGACGTGCCGCTTCTCGACG AGCGAGCTGCTGGACGCCGGCGTGGGCGCGCTGGCTTTCGAGGGGGAAGG CGGCCACCTATGCTTCGTCCGCGCCAATGATTTTGCTGCCTTGCTGAGCG CGCACTCGCCGCAGCTAAGGTAAGCCGCCTGCTTTCTCACTCGCGTGCAA CTTTTGGTGCTCGATATCTGTAGATTTACGAAAGAATCGTACAGTCCTAA ATGTTCCTCGTGCCGTGCCGGTTTTCGCCTCTTTTCTCTGTGGATTTAGA GAATCAACGGGGAACTCACCTTATTTTTGGTTTCTGTTCCTCTGCTTCTC AGGTGTGCGGTGCTGAACGCTTGCGGGTCGGGCCTCCAGTGCCTGCTGGC GACCCAGTCGATCCCTCTGTGCATCGGTATGGCTGGCCAAATCACCGACC ACGACGCCGCGGCGTTCAGCGGTGGCTTTTACGACGCGCTAGCGGCCGGC GCCGGCGTGGACAAGGCTTTTGCGGAAGGGAAGCGCCGGATCGGCCTCCA CGCGCTGGACCACTTCCACCCGCTCCACGCCCACCAGTCGGGCGTGCACG TCGCAATGGTGCGCCCCAGCCCGCTGGTCTCGCTGTTCAAGAGCGCGGCG CTGTCGGCAGGCAGCGGCAGCGGCGCCGCGCTTGCGCGCCGGGCTGACGG CCCTCTTTGCATCGCCGCCGGCGGGAGCAGAAGCGCCGCCAGCAATTCGG GGGGTCAGGAGGAATGGGCGTCGCACCCCATGTTGGGGCCGCTGATCGGG CTCGAAGTGGCGTCGGCGGCCGTGCCTTCTGCCATGGTCGGGACGGCCGC GGCGGCGGCAAGCTGTTCGTGCGACGGGCAGGGCCCATCACTGGAAGAGG AGAACGCCAAGCTAAAGCAGCTCATCCAGTACGGGATGCGCCTGCTGAGC GAAAAGGACGTGGCGCACCGGCGGCTGGAGGCGCAGCTGGCCGCCGCTCA GCGGCACCGCGCGGCCGAAGCCGACGTGCGGCTGCTGGAGGCTCGGTGTG GAGAAGCATCTCGGCAGCAGCCTTCTGCGTCTCAGCCGCTCCGACGCCGG AGCTATTCGAAGGTCAGTGATGCCGCAGACGTGGGTAGCGGCACTGGGAG CGGCGGCGGCGGCGGCGGCATCGGGGCTGGTGGCGGCAGCGGTGGCGGCA GCGGTGGCGGCGGCGGCGCCAACAACAGCGGCAGCACTGGTGCTGTTGTT CACGGTGATAGGGGCGGCGGGAGCAAGAAGAAACCGAAGCCCGTGCAGGT GAAGCACACCAAGGCATCGCTGCTGGCGCGACGGTACATCCTGTCGAACA AGAAGCACTCGGCCAACGAAGTGGAAGACCCGATCAGCCCTCTGCGCCGC GCTTGCAGCGGCATCGGCACCGGCTGCGGCGCCAGCAGGGCCAGCGGCGC TGGCCGCCGCAAGAGCGAATCGGCGCCGATGAAGTCCTTGCTTTCCTTCG AGGCCGAAGTAACGGTCAAGGCCTCGTCGTCATGCTTGGCCAAATCGACG CTCACGCCTTCATCTCCAGCGGACTCGCACCCCGAGGGCGCAGCGTCGCT CGCGGCGCCACCGGCCCGCGATCAGTCTTCGGCCACGCAACCAGCAGGAA CCACCACGGCGCCGGTGGGAGCAGTTACAATGGTGGCAAGACCAAGCCAG CCGTCAGCCGTGGCTGCTCTGGCCAACTATCACGCCCACGGCAGCCAGCC GCACGGAGGCAAGACGGCGGCGGTGGCGGCGGCGGCGGCGGCAGCAGCGG CAGCGGCGGGCACGCATCAGTTCACGTCGCGGACGCCGCGTTTCCCACTA GACGGGGCGGGTGGCGGAGGGCCGGCATTGGCCCGGTTTATGTACGCCGA CCCGCGTCTCACGGCGAACTCTGCCGCCGCCGCCGCCGCGGCCGCTGCAG CCGCTGCCGCGGGCAGGCGGGAGTCGGTGCCGGAAAAGGGCCGCTGGCCC GAACGAGGGCTGGGGTTTTGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7478:2..3023-

>mRNA_P-wetherbeei_contig7478.1.2 ID=mRNA_P-wetherbeei_contig7478.1.2|Name=mRNA_P-wetherbeei_contig7478.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1923bp|location=Sequence derived from alignment at P-wetherbeei_contig7478:2..3023- (Phaeothamnion wetherbeei SAG_119_79)
GGGGAAAGAAACGACGTGGTCGTTGCTCGATTGCGGACGGGCTCCCTTTC
TCCCACTGAGGATGGGTCGTTTTCTCCGACTTCGGATAGCTCCGACGCCT
CGTCAGAGTCATCTGGCTTGGAGGATAGCGCGCCCACCACTGCCCTGGAC
GGTCCTCAACCCGTGGAGGAAGGGCTGGGCTTCGAACTGACGGGAGAAGA
ACCCTCGATGACACCAAGCCTACGAAGACTGGCGGCGCCGGCAGTGGCGT
CGACGGTGGCATCGACGCCGACGGCGGTGGCTGCGGAGCGGGACCTGGTG
GTGCAGCAGCCGCACCTCCGCATCCTCTTGTGCTTCTGCAATCCGAGGCA
CAGCAACCACCTGCGACTGCAGGCCGAAGAGCGCATCATACGTCAGGCCA
TCAAGAACGGTCGCTATCGCGACTCCATTACAGTCACCGTGCTGCCGGCT
GCGACCGTCGATGATCTCTCTCGAGCTTTGCTGGAGGAGAGGTACGATGT
GCTGCATTTCTCAGGCCACGCAGACCCGCAGACGAACGCCCTGTCCGTCC
GGTTAGCCCGACTCCGCGACCTCCACGGGGCGGAGGCCCTCGAGGCGGTG
CGCAACGACCCCGCGGCGGTGTCGGCGTTGGAGAAGGCGGCCGCGACGCT
CCTCAGCCAGCTTGAGGAGCTCTTGGCCGACGAGGCCCGCTGCGGCGGCG
GGCCTGACTGCGGAAGCGAGGCCGCGCACATTGAAGTCAGCATTCCCGAC
TTGATGGCGGGCTTTGAGCGCGGCGACCCCGACCGTTGCGCAGCAGCGGT
GGTAGCCGGCGGCAGTGGTGCTTCTCCGGTGCCGGCCCCGTCGCACATGG
TCCCCACGGGTGGCTACGGGCTGACGTGCCGCTTCTCGACGAGCGAGCTG
CTGGACGCCGGCGTGGGCGCGCTGGCTTTCGAGGGGGAAGGCGGCCACCT
ATGCTTCGTCCGCGCCAATGATTTTGCTGCCTTGCTGAGCGCGCACTCGC
CGCAGCTAAGGTGTGCGGTGCTGAACGCTTGCGGGTCGGGCCTCCAGTGC
CTGCTGGCGACCCAGTCGATCCCTCTGTGCATCGGTATGGCTGGCCAAAT
CACCGACCACGACGCCGCGGCGTTCAGCGGTGGCTTTTACGACGCGCTAG
CGGCCGGCGCCGGCGTGGACAAGGCTTTTGCGGAAGGGAAGCGCCGGATC
GGCCTCCACGCGCTGGACCACTTCCACCCGCTCCACGCCCACCAGTCGGG
CGTGCACGTCGCAATGGTGCGCCCCAGCCCGCTGGTCTCGCTGTTCAAGA
GCGCGGCGCTGTCGGCAGGCAGCGGCAGCGGCGCCGCGCTTGCGCGCCGG
GCTGACGGCCCTCTTTGCATCGCCGCCGGCGGGAGCAGAAGCGCCGCCAG
CAATTCGGGGGGTCAGGAGGAATGGGCGTCGCACCCCATGTTGGGGCCGC
TGATCGGGCTCGAAGTGGCGTCGGCGGCCGTGCCTTCTGCCATGGTCGGG
ACGGCCGCGGCGGCGGCAAGCTGTTCGTGCGACGGGCAGGGCCCATCACT
GGAAGAGGAGAACGCCAAGCTAAAGCAGCTCATCCAGTACGGGATGCGCC
TGCTGAGCGAAAAGGACGTGGCGCACCGGCGGCTGGAGGCGCAGCTGGCC
GCCGCTCAGCGGCACCGCGCGGCCGAAGCCGACGTGCGGCTGCTGGAGGC
TCGGTGTGGAGAAGCATCTCGGCAGCAGCCTTCTGCGTCTCAGCCGCTCC
GACGCCGGAGCTATTCGAAGGTCAGTGATGCCGCAGACGTGGGTAGCGGC
ACTGGGAGCGGCGGCGGCGGCGGCGGCATCGGGGCTGGTGGCGGCAGCGG
TGCCGCTGCCGCGGGCAGGCGGGAGTCGGTGCCGGAAAAGGGCCGCTGGC
CCGAACGAGGGCTGGGGTTTTGG
back to top