mRNA_P-wetherbeei_contig7471.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7471.1.1
Unique NamemRNA_P-wetherbeei_contig7471.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7471.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7471contigP-wetherbeei_contig7471:1623..2459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size839
Hectar predicted targeting categoryother localisation
Exons1
Cds size828
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186983.4284573-UTR-P-wetherbeei_contig7471:1622..16311683186983.4284573-UTR-P-wetherbeei_contig7471:1622..1631Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7471 1623..1631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186983.4373891-CDS-P-wetherbeei_contig7471:1631..24591683186983.4373891-CDS-P-wetherbeei_contig7471:1631..2459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7471 1632..2459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7471.1.1prot_P-wetherbeei_contig7471.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7471 1632..2459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7471.1.1

>prot_P-wetherbeei_contig7471.1.1 ID=prot_P-wetherbeei_contig7471.1.1|Name=mRNA_P-wetherbeei_contig7471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
MQQRGPPPPMAERHASTAASRQVHWEEGSNLAASATSSASLPLAALAAAA
AVVEQMPEGDAVFSTSPATTAAPGRARSGSRKSNRKAQSMLLHAPLPPPK
LSPTPPKLSPPPPTQPPAQIVQPLHPESAAGSVRDSSSSSSSSIGGGDNG
SGDSEGSGGSGRDERPERRGDKSKAVQSQLAGFSAAAVKTAAKTAREEQG
PQFRPARAVLVRTSSRGVGGDGASPDGFQQATTKIGTAPVAFAAATAAAA
AAAAAVAAVTDSEQANFGLPPSYEPD
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mRNA from alignment at P-wetherbeei_contig7471:1623..2459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7471.1.1 ID=mRNA_P-wetherbeei_contig7471.1.1|Name=mRNA_P-wetherbeei_contig7471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig7471:1623..2459+ (Phaeothamnion wetherbeei SAG_119_79)
TGGACGGCGATGCAGCAGAGGGGGCCGCCGCCGCCGATGGCGGAGCGGCA
CGCTTCCACCGCAGCCAGTCGGCAGGTCCACTGGGAGGAGGGCAGCAATT
TGGCGGCTTCGGCGACGTCCTCGGCGTCTTTGCCGCTGGCGGCGCTAGCG
GCGGCGGCGGCGGTGGTGGAGCAAATGCCGGAAGGAGATGCAGTTTTCTC
GACGTCTCCCGCGACCACCGCAGCTCCTGGCAGGGCACGCAGCGGCAGCC
GGAAGAGCAACAGGAAGGCGCAATCGATGCTGCTGCACGCGCCGTTGCCG
CCACCAAAACTGTCGCCAACGCCGCCAAAGCTATCGCCGCCACCGCCGAC
GCAACCGCCGGCTCAGATCGTGCAGCCCCTACATCCCGAGAGCGCGGCTG
GCAGCGTTCGCGACAGCAGCAGTAGCAGCAGTAGCAGTATCGGTGGCGGC
GACAACGGCAGTGGTGACAGCGAGGGCAGTGGAGGCAGCGGCCGGGATGA
GCGCCCTGAACGGCGCGGCGACAAGTCAAAGGCGGTGCAGTCGCAGTTGG
CTGGTTTTTCGGCGGCGGCGGTAAAGACGGCGGCGAAGACAGCGCGGGAA
GAGCAGGGACCGCAGTTTCGCCCCGCCCGTGCCGTGCTCGTGCGGACGAG
TAGCCGCGGTGTTGGCGGCGATGGGGCCTCTCCTGATGGGTTTCAACAGG
CAACGACGAAGATCGGGACGGCACCGGTGGCCTTTGCGGCTGCAACTGCT
GCTGCTGCTGCGGCGGCGGCAGCGGTGGCGGCTGTGACGGACAGCGAGCA
GGCGAATTTCGGCCTCCCTCCCTCCTACGAGCCCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7471:1623..2459+

>mRNA_P-wetherbeei_contig7471.1.1 ID=mRNA_P-wetherbeei_contig7471.1.1|Name=mRNA_P-wetherbeei_contig7471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig7471:1623..2459+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCAGAGGGGGCCGCCGCCGCCGATGGCGGAGCGGCACGCTTCCAC
CGCAGCCAGTCGGCAGGTCCACTGGGAGGAGGGCAGCAATTTGGCGGCTT
CGGCGACGTCCTCGGCGTCTTTGCCGCTGGCGGCGCTAGCGGCGGCGGCG
GCGGTGGTGGAGCAAATGCCGGAAGGAGATGCAGTTTTCTCGACGTCTCC
CGCGACCACCGCAGCTCCTGGCAGGGCACGCAGCGGCAGCCGGAAGAGCA
ACAGGAAGGCGCAATCGATGCTGCTGCACGCGCCGTTGCCGCCACCAAAA
CTGTCGCCAACGCCGCCAAAGCTATCGCCGCCACCGCCGACGCAACCGCC
GGCTCAGATCGTGCAGCCCCTACATCCCGAGAGCGCGGCTGGCAGCGTTC
GCGACAGCAGCAGTAGCAGCAGTAGCAGTATCGGTGGCGGCGACAACGGC
AGTGGTGACAGCGAGGGCAGTGGAGGCAGCGGCCGGGATGAGCGCCCTGA
ACGGCGCGGCGACAAGTCAAAGGCGGTGCAGTCGCAGTTGGCTGGTTTTT
CGGCGGCGGCGGTAAAGACGGCGGCGAAGACAGCGCGGGAAGAGCAGGGA
CCGCAGTTTCGCCCCGCCCGTGCCGTGCTCGTGCGGACGAGTAGCCGCGG
TGTTGGCGGCGATGGGGCCTCTCCTGATGGGTTTCAACAGGCAACGACGA
AGATCGGGACGGCACCGGTGGCCTTTGCGGCTGCAACTGCTGCTGCTGCT
GCGGCGGCGGCAGCGGTGGCGGCTGTGACGGACAGCGAGCAGGCGAATTT
CGGCCTCCCTCCCTCCTACGAGCCCGAT
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