mRNA_P-wetherbeei_contig7465.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7465.1.1
Unique NamemRNA_P-wetherbeei_contig7465.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7465.1.1 vs. uniprot
Match: D7FT50_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT50_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.140e-22
Identity = 112/364 (30.77%), Postives = 152/364 (41.76%), Query Frame = 3 
Query:  618 FTACETFSGAWPGHVFKLGDRGVGYYED----------------CQAPLPPPP-----------------RTVDVAEALGKLRKPLQSTRKLPKAAKLMRALMDAELTPGTALQFFAVLEATLATRTGITAMAAATAEVAAPRSSAXXXXXXXXXXXXXXXXXXXXXMERDAAHAAVASVVAGAWQRRDCFSAAQQVKINAWRLRLLSVPQLRTDDSWSFAAACRALGADIEALSATI------------------TSGAGGDAVDAGSPARALLEATVACMRLAFSRYHHAWAQQPVDAAFQKASDRRLLFPP-NLRETVDDFTTRIHERRRRPAGFS---QHTVRAIESTAHPLRNRKGDII 1544
            F A ++FSGA  G+VF+ G  G+GYY D                 +A    P                  +TVDVA +L KL+  +   +K  KAA LM  LM+A L P  A  FF  L+       G  A+AA      A R  A                               AS   GA         ++ V+   W L        +TDDS++FA A + L   IEAL                      T  AGG+ V      +  L   +  M+ AF  YH AWA+  ++ AF+ A+DRR LFP  +LR+T+DDFT  I +R+R P G       +VRA  STAHP+ N++ D+I
Sbjct:  161 FRAADSFSGARKGYVFQKGPLGLGYYADRVQIRAAAAADAVVAASRAKSRGPEARGSGGRPETEGREKKTQTVDVAASLQKLKVFILKPKKAAKAASLMADLMEAHLRPENARMFFRALKPLAEEPAGEAALAAGEGGARAFRKLAQR-----------------------------ASEWVGA--------PSEGVRAVTWELLFGLRHDTKTDDSFTFARAIKRLREAIEALGGVTGGGKATDGTXXXXXXXXXTGSAGGNRVSLSLERKTAL---ILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEGDLRDTLDDFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVI 484
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BLAST of mRNA_P-wetherbeei_contig7465.1.1 vs. uniprot
Match: A0A4D9DB73_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB73_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.590e-10
Identity = 76/279 (27.24%), Postives = 122/279 (43.73%), Query Frame = 3 
Query:  726 PRTVDVAEALGKLRKPLQSTR--KLPKAAKLMRALMDAELTPGTALQFFAVLEATLATRTGITAMAAATAEVAAPRSSAXXXXXXXXXXXXXXXXXXXXXMERDAAHAAVASVVAGAWQRRDCFSAAQQVKINAWRLRLLSVPQLRTDDSWSFAAACRALGADIEALSATITSGAGGDAVDAGSPARALLEATVACMRLAFSRYHHAWAQQPVDAAFQKASDRRLLFPPNLRETVDDFTTRIHERRR----RPAG-FSQHTVRAIESTAHPLRNRKGDI 1541
            P+T+++ EAL K+ + L S +  K  KA  L+  L+ AE+    A QF A L   +A+      +    AE                              +R  AHA +A+V     +R   F  + Q +  +W L  L  P+L TDD+++F  A R +   + AL             D     R   +A +AC+R A  +  H+WA+  ++  F+  S++RL FP   RE +D+  T++    R     P+G     +VR + S A P   +KGD+
Sbjct:   85 PKTLELHEALQKITRALTSPKLEKSRKAMGLLTKLLTAEMNTENASQFHAALGFFMASEGVWERLLGPGAE------------------------------DRALAHALLAAVR----ERILLFEPSAQYRAASWVLVGLLRPELLTDDTFAFRRAARRIREYVTALENLRE--------DDNLADRERRKAILACLRTALKQNFHSWAKASIEELFKATSEKRLCFPEEEREELDEMATKLRTEARGLSVNPSGTVVSRSVRMVNSMATPFNTKKGDV 321
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7465.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT50_ECTSI7.140e-2230.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DB73_9STRA1.590e-1027.24Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7465contigP-wetherbeei_contig7465:239..2369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.A0A090M249
Model size2131
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000278
EggNOG OGs28JEN@1|root,2QRTM@2759|Eukaryota,37KQT@33090|Viridiplantae,34IQ0@3041|Chlorophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003580.1
Cds size1386
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186983.08737-UTR-P-wetherbeei_contig7465:238..8191683186983.08737-UTR-P-wetherbeei_contig7465:238..819Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7465 239..819 -
1683186983.1101506-UTR-P-wetherbeei_contig7465:2205..23691683186983.1101506-UTR-P-wetherbeei_contig7465:2205..2369Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7465 2206..2369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186983.0996053-CDS-P-wetherbeei_contig7465:819..22051683186983.0996053-CDS-P-wetherbeei_contig7465:819..2205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7465 820..2205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7465.1.1prot_P-wetherbeei_contig7465.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7465 820..2205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7465.1.1

>prot_P-wetherbeei_contig7465.1.1 ID=prot_P-wetherbeei_contig7465.1.1|Name=mRNA_P-wetherbeei_contig7465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=462bp
MMSSKRAFHEAFKRNPYANLSALAKPRKVDALAPSASDSPLLVAVGEAEG
PASTPVQGLYANTSGAASKVSGEAAGAARQEPSILPLELEAPTEAALTVS
SGTAEGTLTGDVADHVPHGEAAASTPDAGEADDNVPDGEANASAPSGPIG
TFTACETFSGAWPGHVFKLGDRGVGYYEDCQAPLPPPPRTVDVAEALGKL
RKPLQSTRKLPKAAKLMRALMDAELTPGTALQFFAVLEATLATRTGITAM
AAATAEVAAPRSSAAAGGASTARGAGSTMAEAAAAMERDAAHAAVASVVA
GAWQRRDCFSAAQQVKINAWRLRLLSVPQLRTDDSWSFAAACRALGADIE
ALSATITSGAGGDAVDAGSPARALLEATVACMRLAFSRYHHAWAQQPVDA
AFQKASDRRLLFPPNLRETVDDFTTRIHERRRRPAGFSQHTVRAIESTAH
PLRNRKGDIIP*
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mRNA from alignment at P-wetherbeei_contig7465:239..2369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7465.1.1 ID=mRNA_P-wetherbeei_contig7465.1.1|Name=mRNA_P-wetherbeei_contig7465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2131bp|location=Sequence derived from alignment at P-wetherbeei_contig7465:239..2369- (Phaeothamnion wetherbeei SAG_119_79)
TTAAAACACCAAGAGGCCCTCACCGAAGCACCGCCGATACATTGTTACCT
GCGATCCGACTGCGCTGGCAGGAGAGGCCCTCCTCGTCTGCAATCGAAGC
TCTAGCTGCACAGAGCGCCAAAGAGAACCCGTGAACGTCCAGCATTATTG
ACGGAAAGCAAGACATGATGTCGTCGAAGCGCGCGTTTCACGAAGCTTTT
AAGCGCAACCCGTACGCGAACCTGAGTGCGCTCGCCAAACCAAGGAAGGT
GGACGCACTGGCGCCCTCAGCATCAGACTCTCCTCTTTTGGTAGCGGTAG
GAGAGGCGGAAGGACCGGCATCGACGCCAGTGCAAGGACTATACGCCAAC
ACGTCAGGAGCAGCGTCAAAGGTATCAGGAGAAGCGGCAGGCGCTGCGAG
ACAAGAGCCTTCTATACTACCACTGGAACTGGAAGCGCCGACGGAAGCAG
CACTGACGGTATCGTCCGGAACGGCCGAGGGTACACTTACAGGAGACGTT
GCAGATCACGTACCGCATGGAGAAGCGGCAGCATCCACACCTGATGCAGG
AGAAGCAGATGACAACGTGCCAGACGGAGAGGCGAATGCATCCGCACCGA
GCGGGCCTATCGGGACGTTCACCGCATGCGAAACCTTCTCTGGCGCCTGG
CCCGGCCACGTCTTCAAGCTCGGGGACAGAGGCGTCGGCTACTACGAGGA
CTGCCAGGCTCCGCTACCGCCACCCCCGCGCACCGTCGACGTCGCCGAAG
CTTTGGGAAAGCTCAGAAAGCCGCTGCAGTCCACGAGGAAGCTTCCCAAA
GCCGCCAAGCTGATGCGAGCGCTCATGGACGCGGAGCTGACGCCCGGGAC
GGCGCTCCAATTCTTTGCCGTACTGGAGGCAACTCTGGCGACGCGGACAG
GCATCACGGCCATGGCCGCCGCCACCGCCGAAGTCGCTGCCCCCCGTTCG
TCCGCCGCTGCCGGCGGCGCCTCCACCGCGAGGGGCGCAGGCAGCACCAT
GGCGGAGGCGGCGGCGGCAATGGAGCGGGACGCGGCGCACGCTGCCGTTG
CATCGGTGGTGGCCGGGGCTTGGCAGCGGCGCGACTGCTTCTCCGCCGCG
CAGCAGGTGAAGATCAACGCGTGGCGCCTGCGCCTGCTATCGGTGCCGCA
GCTGCGGACGGACGATTCCTGGTCGTTCGCTGCGGCTTGTCGAGCTTTGG
GCGCCGACATTGAAGCACTCTCGGCGACCATTACGTCGGGCGCCGGCGGC
GACGCCGTCGACGCCGGCAGCCCCGCCCGGGCGCTGCTAGAGGCGACGGT
CGCCTGCATGCGACTGGCGTTCTCGCGATACCACCACGCCTGGGCGCAGC
AGCCGGTCGACGCGGCGTTCCAAAAGGCTTCAGATCGGCGGCTGCTCTTC
CCGCCGAACCTGCGGGAGACTGTGGACGACTTTACGACGCGGATCCACGA
GCGGCGGCGGCGGCCGGCGGGCTTCTCGCAGCACACGGTGCGCGCCATCG
AGTCCACGGCGCACCCGCTGCGGAACCGCAAGGGAGATATCATACCGTAG
GACAGCAATTTGATCTCGGGAGAACGTTGAGCGGTAACCAAATGCTTCTC
TTTGAGAGAGGGCTTGTCTTCAATTCTCGGATGTTTTTCTTCGTATCGGA
GTTCTTCGTGGTTCTTTCTAAGATTAATGGTCAGTCAATTTTGAATGGCA
CCTCGTTCTGGTTGGCCAGCAAACCTCACGGTGTGTCTTCTTGTCAGGTC
TGAGAAATGGGTAAAGGAGGAAGAGGCTTTCTCTGCAGATAGGTGCTTCT
CACATGCAAACCATACAAGCGCAAGAGTGTACAACTAGTATGTGACTACA
CTAGCGGAGTGGGCTTTCCTGGATTGCAGGTTTGTCCTACCTCGGAGGGG
CGAGGGGAGGCACTATTGCCAACACAGGCGGAAGAGAAGGAAAAATTAAG
GCTCTTGTCGCCGGGAAGGCCAGCGGCACACCTTTTCGTCATTTTCTCCA
CCTTTAATAGTGCATCCTCTTCTGGGGGAAAGAACCTCCGGTGCTCGCAC
CAAAGAAGACGGCGGTCCTTCGGCAAGGGGACAACCAACAGCAGCCATTC
CAGGCAAATCCTGGTGTTACCCGGCCTTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7465:239..2369-

>mRNA_P-wetherbeei_contig7465.1.1 ID=mRNA_P-wetherbeei_contig7465.1.1|Name=mRNA_P-wetherbeei_contig7465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig7465:239..2369- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGTCGTCGAAGCGCGCGTTTCACGAAGCTTTTAAGCGCAACCCGTA
CGCGAACCTGAGTGCGCTCGCCAAACCAAGGAAGGTGGACGCACTGGCGC
CCTCAGCATCAGACTCTCCTCTTTTGGTAGCGGTAGGAGAGGCGGAAGGA
CCGGCATCGACGCCAGTGCAAGGACTATACGCCAACACGTCAGGAGCAGC
GTCAAAGGTATCAGGAGAAGCGGCAGGCGCTGCGAGACAAGAGCCTTCTA
TACTACCACTGGAACTGGAAGCGCCGACGGAAGCAGCACTGACGGTATCG
TCCGGAACGGCCGAGGGTACACTTACAGGAGACGTTGCAGATCACGTACC
GCATGGAGAAGCGGCAGCATCCACACCTGATGCAGGAGAAGCAGATGACA
ACGTGCCAGACGGAGAGGCGAATGCATCCGCACCGAGCGGGCCTATCGGG
ACGTTCACCGCATGCGAAACCTTCTCTGGCGCCTGGCCCGGCCACGTCTT
CAAGCTCGGGGACAGAGGCGTCGGCTACTACGAGGACTGCCAGGCTCCGC
TACCGCCACCCCCGCGCACCGTCGACGTCGCCGAAGCTTTGGGAAAGCTC
AGAAAGCCGCTGCAGTCCACGAGGAAGCTTCCCAAAGCCGCCAAGCTGAT
GCGAGCGCTCATGGACGCGGAGCTGACGCCCGGGACGGCGCTCCAATTCT
TTGCCGTACTGGAGGCAACTCTGGCGACGCGGACAGGCATCACGGCCATG
GCCGCCGCCACCGCCGAAGTCGCTGCCCCCCGTTCGTCCGCCGCTGCCGG
CGGCGCCTCCACCGCGAGGGGCGCAGGCAGCACCATGGCGGAGGCGGCGG
CGGCAATGGAGCGGGACGCGGCGCACGCTGCCGTTGCATCGGTGGTGGCC
GGGGCTTGGCAGCGGCGCGACTGCTTCTCCGCCGCGCAGCAGGTGAAGAT
CAACGCGTGGCGCCTGCGCCTGCTATCGGTGCCGCAGCTGCGGACGGACG
ATTCCTGGTCGTTCGCTGCGGCTTGTCGAGCTTTGGGCGCCGACATTGAA
GCACTCTCGGCGACCATTACGTCGGGCGCCGGCGGCGACGCCGTCGACGC
CGGCAGCCCCGCCCGGGCGCTGCTAGAGGCGACGGTCGCCTGCATGCGAC
TGGCGTTCTCGCGATACCACCACGCCTGGGCGCAGCAGCCGGTCGACGCG
GCGTTCCAAAAGGCTTCAGATCGGCGGCTGCTCTTCCCGCCGAACCTGCG
GGAGACTGTGGACGACTTTACGACGCGGATCCACGAGCGGCGGCGGCGGC
CGGCGGGCTTCTCGCAGCACACGGTGCGCGCCATCGAGTCCACGGCGCAC
CCGCTGCGGAACCGCAAGGGAGATATCATACCGTAG
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