mRNA_P-wetherbeei_contig7456.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7456.1.1
Unique NamemRNA_P-wetherbeei_contig7456.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7456contigP-wetherbeei_contig7456:174..3083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2239
Hectar predicted targeting categoryother localisation
Exons4
Cds size1815
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7456.1.1prot_P-wetherbeei_contig7456.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7456 202..2687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186982.6324427-UTR-P-wetherbeei_contig7456:173..2011683186982.6324427-UTR-P-wetherbeei_contig7456:173..201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7456 174..201 +
1683186982.6840165-UTR-P-wetherbeei_contig7456:2687..30831683186982.6840165-UTR-P-wetherbeei_contig7456:2687..3083Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7456 2688..3083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186982.6429439-CDS-P-wetherbeei_contig7456:201..3001683186982.6429439-CDS-P-wetherbeei_contig7456:201..300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7456 202..300 +
1683186982.6525865-CDS-P-wetherbeei_contig7456:576..6861683186982.6525865-CDS-P-wetherbeei_contig7456:576..686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7456 577..686 +
1683186982.6625123-CDS-P-wetherbeei_contig7456:807..22211683186982.6625123-CDS-P-wetherbeei_contig7456:807..2221Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7456 808..2221 +
1683186982.673525-CDS-P-wetherbeei_contig7456:2495..26871683186982.673525-CDS-P-wetherbeei_contig7456:2495..2687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7456 2496..2687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7456.1.1

>prot_P-wetherbeei_contig7456.1.1 ID=prot_P-wetherbeei_contig7456.1.1|Name=mRNA_P-wetherbeei_contig7456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=605bp
MLRAAQERRVAAQLAEVSTDVDAGADAVRQQLEEASSRRVALAGACDAAA
STLNQLCIQLAPHATDNAKSESRLERIAARVEETQSRIETASGAAWATPA
GTVTSRLMRQGLEVTAAADDELQRLAVRWAGRRDAVAAAEEAEATAAALA
AVLQRQGWASPPAVAVAAAAAAIPETEVSANEVDLSLPVCSSGDDWGSDG
GTEAGGGAVDAATALAAAAAVTDAMAAEKAVAATSAVDGEALLEALAAAA
AAWRSGAAAAEQRGGRKSRMRALLDEQLSEESKATAEAEAAAAAAVVMAR
AVAPGREATAAVAAGATRLEELRLSFTGPAGAPARGPQAFGPKGVVLEAS
ATIPTDSAWRAAAAAKMVAEIATEEDRRTRADAFAASGSQDSFSDQASTS
GLNDNAGGSVGGDGGGDALRAAADMVPPRNWQAPDASASSAGGSGADDGG
SGAPRWASVSAAVEVEIVDAMVVTDTQAASGARDASVPASGIAVAAAAPG
VVGDCDAALEVEVVAMVAGDAGVVDLDGDAVKEVPDEQREATRAAFKVLD
VAFLLAEKALLVGLPSALAAAGTASRRLSALARAGGGPGWRLLRQVKRRS
GDDD*
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mRNA from alignment at P-wetherbeei_contig7456:174..3083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7456.1.1 ID=mRNA_P-wetherbeei_contig7456.1.1|Name=mRNA_P-wetherbeei_contig7456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2910bp|location=Sequence derived from alignment at P-wetherbeei_contig7456:174..3083+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCGCTGGCAGCGCTGCAATGGTGCATGCTGCGGGCGGCGCAGGAGC
GGCGGGTGGCGGCACAGCTGGCGGAAGTGTCCACCGACGTCGACGCCGGC
GCTGATGCCGTGCGACAACAGCTCGAGGTGCATCTTCTGCATTCTACCAC
TTGTTCTAAGTGGATTTCTATTTTTTTCCTGTGTCGCCCTTCTGAACGTA
AATTGCTGTTTTGATTGGCATGCCGCTGGAAAACCAGCTTATTCTCTTTA
TTCATGTGGTTGTCCAAGTCATGATTGCATTCACTAGCCCAGTTGGATGA
GGGAACGATTGATGTGAGCCTTTTGCCTCCATCCACCCTTGACCCCAGAA
GCCGCAGTTCCTGGCTTACCTTTTTGTGCATATGGTATATTCTCTCCATG
CAGGAAGCGTCGTCAAGACGGGTGGCGCTGGCAGGGGCCTGCGATGCGGC
TGCGTCCACACTTAACCAGCTGTGCATTCAGCTGGCGCCGCACGCCACCG
ACAACGCCAAAAGGTGGGCCGCGGGAACGGGAGAAGTGAGAAGCGAAATT
AAGCGCGTAATCGTTACGGGTTCATGTACTGTTCGTCTGAAAACCTCTCT
GTCACTTTTCTCTTCCGCCCCGTTTCCTCCGCAGCGAATCCCGCCTGGAA
CGGATTGCTGCGCGCGTGGAGGAAACCCAGTCCCGCATAGAAACAGCTAG
CGGCGCCGCATGGGCCACTCCGGCGGGCACTGTGACCTCCCGGCTGATGC
GGCAGGGGCTCGAAGTCACCGCCGCGGCGGACGATGAGCTGCAGCGGCTG
GCAGTCCGCTGGGCCGGGCGGCGGGACGCGGTGGCGGCGGCCGAGGAAGC
GGAGGCGACGGCGGCGGCGCTGGCAGCCGTCTTGCAGCGGCAAGGGTGGG
CGTCGCCACCCGCAGTGGCGGTCGCGGCGGCGGCGGCGGCAATACCTGAG
ACGGAAGTATCCGCCAACGAGGTTGACTTATCCCTCCCTGTGTGCAGCAG
CGGCGACGATTGGGGAAGTGATGGGGGCACCGAAGCCGGCGGCGGCGCTG
TTGACGCAGCGACGGCACTCGCCGCGGCGGCGGCTGTGACGGACGCGATG
GCGGCGGAGAAGGCGGTGGCGGCGACGTCGGCAGTAGACGGCGAGGCGCT
GCTGGAGGCGCTCGCAGCGGCGGCCGCCGCTTGGCGCTCCGGGGCCGCCG
CGGCGGAGCAGCGCGGCGGGCGGAAGAGCCGGATGCGCGCCCTGCTGGAT
GAGCAGTTGAGCGAAGAGAGCAAGGCGACGGCTGAAGCCGAGGCCGCCGC
AGCTGCCGCTGTCGTCATGGCACGGGCGGTGGCACCAGGAAGAGAGGCCA
CGGCGGCAGTTGCAGCTGGAGCGACGCGCTTGGAGGAGCTGCGGCTGTCT
TTTACCGGCCCGGCCGGCGCGCCGGCGCGAGGACCACAGGCCTTTGGGCC
AAAAGGGGTTGTGCTGGAGGCTTCCGCCACAATTCCAACGGATTCAGCGT
GGAGGGCGGCCGCTGCGGCGAAAATGGTGGCTGAGATCGCGACAGAGGAA
GACAGGAGAACGCGGGCCGATGCATTTGCTGCAAGCGGCTCGCAGGACTC
TTTCAGCGACCAGGCGTCCACCAGTGGTCTGAACGACAACGCCGGCGGCA
GCGTCGGCGGCGACGGCGGCGGTGACGCCTTGCGTGCTGCAGCCGACATG
GTGCCGCCGCGCAACTGGCAAGCCCCTGATGCATCGGCATCATCAGCCGG
AGGCAGCGGCGCTGATGACGGCGGCAGCGGTGCGCCTCGCTGGGCCAGCG
TATCTGCCGCTGTGGAAGTCGAAATAGTCGACGCCATGGTCGTTACCGAC
ACCCAGGCCGCGTCAGGAGCGCGCGATGCTTCGGTTCCGGCGAGTGGGAT
TGCTGTGGCAGCAGCGGCTCCAGGAGTAGTGGGCGACTGTGACGCCGCCC
TGGAAGTGGAAGTCGTGGCGATGGTGGCGGGCGACGCGGGCGTGGTAGAT
CTCGACGGCGACGCCGTAAAGGAGGTGCCGGACGAGCAGCGCGAAGCGGT
GAGCGGTTTTATTGAGGAACTGCCACAAGTGTCTGAAGGTCTTTTTGACT
TTCGTACGGCTCCTCGGATTGTTGCCCTTTATATTTTTCTGTTGTGAGTA
AGAGGGAAAGTTCGGACGGCATTGATAGCCTCAGCCATCCTCGGTTTACC
GTATGTTATATTCTGCAGCACCGCAAGCGCCACCTGCCGCTTCCTTTTCC
GATTCTCGCTGCCGCCTGTGCCCGCGCGCTCCGGCTGCGGCGCCAACCGA
ACGGCACCAACGATTCTGACAGACGCGGGCGGCATTCAAGGTCCTGGACG
TGGCGTTCCTCCTGGCGGAGAAGGCACTGCTCGTCGGGCTTCCTTCCGCC
CTTGCCGCCGCCGGCACCGCGTCGCGGCGGCTCTCGGCGCTCGCCCGGGC
CGGCGGCGGGCCCGGCTGGCGGTTGCTGCGGCAGGTCAAGCGGCGCAGCG
GCGACGATGACTGACGGCGGGCCGGACTATGGCGCAGCCTGAGCCAGGCG
GCTCGTTTGCTTCAGCGAAGCTTTCGATGAAGACGCTGGTGAGCACGCCA
GCGAAAACGTCGGCGAAATACAGGCAAATTCACGCGCCGTCGAAGCCGCC
GGCGAAACCGTCTTTTTCTACCGGTGGACCGACGGGCAGAAGTCTGTCCT
GGTGAGCAAGCACCGCTGGTCCGGCGGGTGGTGAGCGAGTGTGCGAGAGT
GAATAACGTTGTCTGTTTTGGCTCGAGGTCGGTGAGACGTAAAGCGTTTG
ATGTGCGCTGGGGGGGAGTGGGCCTGGCCGGCTTCAGCACCTGGAGAAGC
ACGGGTGGAGCGCGGTTGTGGAGGCTGCCTCTCCAGAAACGTTGCTGGGA
ATCAACCGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7456:174..3083+

>mRNA_P-wetherbeei_contig7456.1.1 ID=mRNA_P-wetherbeei_contig7456.1.1|Name=mRNA_P-wetherbeei_contig7456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1815bp|location=Sequence derived from alignment at P-wetherbeei_contig7456:174..3083+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGGGCGGCGCAGGAGCGGCGGGTGGCGGCACAGCTGGCGGAAGT
GTCCACCGACGTCGACGCCGGCGCTGATGCCGTGCGACAACAGCTCGAGG
AAGCGTCGTCAAGACGGGTGGCGCTGGCAGGGGCCTGCGATGCGGCTGCG
TCCACACTTAACCAGCTGTGCATTCAGCTGGCGCCGCACGCCACCGACAA
CGCCAAAAGCGAATCCCGCCTGGAACGGATTGCTGCGCGCGTGGAGGAAA
CCCAGTCCCGCATAGAAACAGCTAGCGGCGCCGCATGGGCCACTCCGGCG
GGCACTGTGACCTCCCGGCTGATGCGGCAGGGGCTCGAAGTCACCGCCGC
GGCGGACGATGAGCTGCAGCGGCTGGCAGTCCGCTGGGCCGGGCGGCGGG
ACGCGGTGGCGGCGGCCGAGGAAGCGGAGGCGACGGCGGCGGCGCTGGCA
GCCGTCTTGCAGCGGCAAGGGTGGGCGTCGCCACCCGCAGTGGCGGTCGC
GGCGGCGGCGGCGGCAATACCTGAGACGGAAGTATCCGCCAACGAGGTTG
ACTTATCCCTCCCTGTGTGCAGCAGCGGCGACGATTGGGGAAGTGATGGG
GGCACCGAAGCCGGCGGCGGCGCTGTTGACGCAGCGACGGCACTCGCCGC
GGCGGCGGCTGTGACGGACGCGATGGCGGCGGAGAAGGCGGTGGCGGCGA
CGTCGGCAGTAGACGGCGAGGCGCTGCTGGAGGCGCTCGCAGCGGCGGCC
GCCGCTTGGCGCTCCGGGGCCGCCGCGGCGGAGCAGCGCGGCGGGCGGAA
GAGCCGGATGCGCGCCCTGCTGGATGAGCAGTTGAGCGAAGAGAGCAAGG
CGACGGCTGAAGCCGAGGCCGCCGCAGCTGCCGCTGTCGTCATGGCACGG
GCGGTGGCACCAGGAAGAGAGGCCACGGCGGCAGTTGCAGCTGGAGCGAC
GCGCTTGGAGGAGCTGCGGCTGTCTTTTACCGGCCCGGCCGGCGCGCCGG
CGCGAGGACCACAGGCCTTTGGGCCAAAAGGGGTTGTGCTGGAGGCTTCC
GCCACAATTCCAACGGATTCAGCGTGGAGGGCGGCCGCTGCGGCGAAAAT
GGTGGCTGAGATCGCGACAGAGGAAGACAGGAGAACGCGGGCCGATGCAT
TTGCTGCAAGCGGCTCGCAGGACTCTTTCAGCGACCAGGCGTCCACCAGT
GGTCTGAACGACAACGCCGGCGGCAGCGTCGGCGGCGACGGCGGCGGTGA
CGCCTTGCGTGCTGCAGCCGACATGGTGCCGCCGCGCAACTGGCAAGCCC
CTGATGCATCGGCATCATCAGCCGGAGGCAGCGGCGCTGATGACGGCGGC
AGCGGTGCGCCTCGCTGGGCCAGCGTATCTGCCGCTGTGGAAGTCGAAAT
AGTCGACGCCATGGTCGTTACCGACACCCAGGCCGCGTCAGGAGCGCGCG
ATGCTTCGGTTCCGGCGAGTGGGATTGCTGTGGCAGCAGCGGCTCCAGGA
GTAGTGGGCGACTGTGACGCCGCCCTGGAAGTGGAAGTCGTGGCGATGGT
GGCGGGCGACGCGGGCGTGGTAGATCTCGACGGCGACGCCGTAAAGGAGG
TGCCGGACGAGCAGCGCGAAGCGACGCGGGCGGCATTCAAGGTCCTGGAC
GTGGCGTTCCTCCTGGCGGAGAAGGCACTGCTCGTCGGGCTTCCTTCCGC
CCTTGCCGCCGCCGGCACCGCGTCGCGGCGGCTCTCGGCGCTCGCCCGGG
CCGGCGGCGGGCCCGGCTGGCGGTTGCTGCGGCAGGTCAAGCGGCGCAGC
GGCGACGATGACTGA
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