mRNA_P-wetherbeei_contig7445.2.5 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7445.2.5
Unique NamemRNA_P-wetherbeei_contig7445.2.5
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 5.710e-85
Identity = 165/327 (50.46%), Postives = 214/327 (65.44%), Query Frame = 1
Query:   22 LQDSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAEEADG--------------SVRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVDGQLPV-------------IADNDDH----HTRAKAENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKEEAARRRR 909
            LQD HPLVRRHA+LL+SQLLLQDY+KWRGLLL+RFLATL D DA+V  L  FTLT PL+ KTP +F  NFVET+FVLNNYSEHP  AAAAA  A+   G               +RRR+ +Y+T+LEHMSDE KI VTAKLA ++L+A +DG LP+              A+ + +      R KA +V++DA  +++  GI+VGG RGG                  SG  G+AAA     +  LLSK++ KHL+E VVP++ +LK VLER HSPLLRE+M Y  ELFR + +EVK VL+++P L  E+ FDL+R++KEE  RR++
Sbjct: 1126 LQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFLATLVDSDASVRDLGAFTLTRPLITKTPGLFAQNFVETLFVLNNYSEHPCYAAAAAGRADAGGGVTMDGIDLGGDNPAQIRRRISVYSTMLEHMSDEQKITVTAKLAQEVLSAVIDGGLPLANSTGSAASNSAAFANGNKNGGGAEARKKASSVVKDALTIMASAGIRVGG-RGGAAAATEADDGSEDMGSQQSGAGGLAAA-----KRTLLSKVALKHLMEKVVPILTALKHVLERAHSPLLREIMSYFGELFRSHKEEVKAVLASEPGLVDEIDFDLRRFEKEEYERRQK 1446          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 5.440e-80
Identity = 161/326 (49.39%), Postives = 206/326 (63.19%), Query Frame = 1
Query:   22 LQDSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAEEADG--------------SVRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVDGQLPVIADNDDHHT------------------RAKAENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKEEAARR 903
            LQD HPLVRRHA+LL+SQLLLQDY+KWRGLLL+RFLATL D DA+V  L  FTLT PL+ KTP +F  NFVET+FVLNNYSEHP  AAAAA  A+   G               +R+RM +Y+T+LEHMSDE KI VTAKLA ++L+A +DG LP +A++    T                  R KA +V++DA  +++  GI+VGG RGG              AD  S         V   R    + ++ KHL+E VVP++ +LK VLER HSPLLRE+M Y  ELFR + +EVK VL+++P L  E+ FDL+R++KEE  RR
Sbjct:  282 LQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFLATLVDSDASVRDLGAFTLTRPLITKTPGLFAQNFVETLFVLNNYSEHPCYAAAAAGRADAGGGVTMDGIDLGGDDPAQIRKRMSVYSTMLEHMSDEQKITVTAKLAQEVLSAVIDGGLP-LANSTGSATSNSAAFANGNKNGGGAKARKKASSVVKDALTIMASAGIRVGG-RGG--------AAAATEADDGS-------VPVICNRPDNATLVALKHLMEKVVPILTALKHVLERSHSPLLREIMFYFGELFRSHKEEVKAVLASEPGLVDEIDFDLRRFEKEEYERR 590          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: W7TNH2_9STRA (Condensin-2 complex subunit d3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNH2_9STRA)

HSP 1 Score: 248 bits (634), Expect = 3.910e-71
Identity = 169/330 (51.21%), Postives = 212/330 (64.24%), Query Frame = 1
Query:    1 MLRCTFLLQDSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAE----------EADGS---VRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVD--GQLPVIADNDDHHT-------RAKA--------ENVLRDAFVVLSCPGIKVGGGRG----GGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKE 888
            M RC   LQD   L+RRHAL L+SQLLLQDYLKWRGLLL R+LA L D D  VA+++ + + +PLL K P++FVN+FVE + VLN  S+H    AA A  AE          + +GS     +RM IY  +L+HMSDE +IQVTAKL  DIL AA D  G+   I     H         R +A        EN++RDA  VL CP IKV GGRG      XXXXXXXXXXXXX   +  G+     + AAA++RLLSK+SRKHL+E+VVP +VSLKA LER HSPL+R +M Y  EL RH  +EVK+ LS +PTL HE+ FDL++++KE
Sbjct:  794 MARC---LQDESSLIRRHALALISQLLLQDYLKWRGLLLHRYLAILVDEDTRVAEVADYMIFSPLLRKNPSLFVNHFVEALVVLNGCSDHDAYKAALAQGAESGTAVTMEGVDLEGSGPAANKRMRIYQAMLQHMSDEQRIQVTAKLTQDILGAATDEDGEAGGIKIQSYHRASRFTQGLRREAALRKLKRDENLIRDALTVLQCPDIKVAGGRGFXXXXXXXXXXXXXXXXXXXXXAEDGSXXGVDAAAAAKSRLLSKVSRKHLLEHVVPELVSLKACLERAHSPLIRNVMEYFLELMRHSKEEVKDALSTNPTLFHEIEFDLQQFEKE 1120          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: A0A4D9D835_9STRA (Cnd1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D835_9STRA)

HSP 1 Score: 242 bits (617), Expect = 6.710e-70
Identity = 165/323 (51.08%), Postives = 207/323 (64.09%), Query Frame = 1
Query:   22 LQDSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAE----------EADGS---VRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVD--GQLPVIADNDDHHT-------RAKA--------ENVLRDAFVVLSCPGIKVGGGRG----GGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKE 888
            LQD   L+RRHAL L+SQLLLQDYLKWRGLLL R+LA L D D  VA+++ + +  PLL K P++FVN+FVE + VLN  S+H    AA A  AE          + +GS     +RM IY  +L+HMSDE +IQVTAKL  DIL AA D  G+   I     H         R +A        EN++RDA  VL CP IKV GGRG      XXXXXXXXXXXXX   +  G+     + AAA++RLLSK+SRKHL+E+VVP +VSLKA LER HSPL+R +M Y  EL RH  +EVK+ LS + TL HE+ FDL++++KE
Sbjct:  385 LQDESSLIRRHALALISQLLLQDYLKWRGLLLHRYLAILVDEDTRVAEVADYMIFAPLLRKNPSLFVNHFVEALVVLNGCSDHDAYKAALAQGAESGTAVTMEGVDLEGSGPAATKRMRIYQAMLQHMSDEQRIQVTAKLTQDILGAATDEDGEAGGIKIQSYHRASRFTQGLRREAALRKLKRDENLIRDALTVLQCPDIKVAGGRGFXXXXXXXXXXXXXXXXXXXXXAEDGSXXGVDAAAAAKSRLLSKVSRKHLLEHVVPELVSLKACLERAHSPLIRNVMEYFLELMRHSKEEVKDALSTNITLFHEIEFDLQQFEKE 707          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: A0A7S4T9Y0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9Y0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.250e-57
Identity = 126/315 (40.00%), Postives = 180/315 (57.14%), Query Frame = 1
Query:   28 DSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAEEADGSV-------------RRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAV--DGQL-------------PVIADNDDHHTRAKAENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKE 888
             S  +VR+HA+LLLS L+LQDY+KWRGLL+ RFL    D D +V++L+  TL  PLL++   +F NNFVE++FVLN  + HP  AAA A     A  +V              +R+ IY  +L HM+DE KI +TA+LA  +L  A+  DG L             P  A       R  A +VL DAF VL+    KVG   GG               D ++   G A     A + +LLSK+SRKHLIE ++P++ +LK++LE   SPLL++LM YL ++FR Y  E +EVL++DPT+  E+ +D ++++K+
Sbjct:  136 SSSSMVRKHAILLLSSLILQDYIKWRGLLVHRFLVAYVDDDESVSKLAEMTLCGPLLSRQRNLFFNNFVESLFVLNRCTAHPIYAAAEANGDNGAGLAVGFEGINLSGMYGRMKRLNIYRMMLNHMTDEEKIGITARLAKVVLGGALESDGDLSMACRQSPPGMFSPSEARKSQQQRRECAISVLSDAFAVLTSKEAKVGRTSGG---------EEGDVEDNTTDANGTA--QFTAVKGKLLSKISRKHLIETILPILCNLKSILEANRSPLLKDLMRYLVDIFRSYRKEAREVLASDPTVLQEIEYDTRQFEKQ 439          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: A0A7S0C9B1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9B1_9STRA)

HSP 1 Score: 195 bits (496), Expect = 5.460e-57
Identity = 123/310 (39.68%), Postives = 176/310 (56.77%), Query Frame = 1
Query:   43 VRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAEEA------DG-------SVRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVD-------GQLPVIADNDDHHTRA-------KAENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKEE 891
            +++HA+++LS LLLQDY+KWRGLL +RFLA   D D  V+QL+  TL  PLL+K P +  +NFVE IFVLN+ S HP   AAAA    +       DG         ++R+  Y  +L +M DE K+ + A+LA ++L +A++            ++ N     R+        A NVL D F VL+ P  +VG    G               D    G     A +A  + RLLSK+SRKHLIE +VP++ +LK VLE   S LL++LM YL E+FR Y  EVKE+L+ DP+L  EL FD+++++K++
Sbjct:    9 IQKHAIIMLSSLLLQDYIKWRGLLFYRFLAATVDEDETVSQLAENTLCGPLLSKQPDLLSSNFVEAIFVLNSCSVHPIYRAAAATGECDNIDIAGFDGIHLFGTKGRKKRLRAYYVMLSNMKDEEKVGIVARLAKEVLGSALEVTSGLSLACRSAVSTNAQKDIRSINVQKYESATNVLSDTFAVLTSPWCRVGRTSTGDENQD----------DNDHAGLSATTAQLAVVKGRLLSKISRKHLIETIVPILCNLKTVLESNRSALLKDLMIYLVEIFRRYKGEVKELLATDPSLLSELEFDMRQFEKKQ 308          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: A0A662Y756_9STRA (Cnd1 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y756_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.930e-56
Identity = 134/294 (45.58%), Postives = 180/294 (61.22%), Query Frame = 1
Query:   22 LQDSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYS------EHPTCAAAAAASAEEADGSVRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVDGQLPVIADNDDHHTRAKAENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEV-LSADPTLAHELAFDLKRYD 882
            L D  PL+RR ALLL SQL+LQDY+KWR  LL  FL    D DA +A L+R  L  PLL K+P IF N F+E IFVLN +         P     A   A   +    +R  +YN LLE+MSDE K+Q++ KL +++L   +DG+LP + DN    T    E VL+DAF +L  P IK+   +        XXXXXXXX        G  A+ +AAA+ +LLSKMS+K+ +ENVVPV++ LK  LE  HSPL R L+ Y+RELF+ Y  EVK++ ++ DP +A E+ +DL++YD
Sbjct:  268 LLDQSPLLRRSALLLFSQLILQDYIKWRESLLRFFLRAAVDEDAELANLARHVLCGPLLQKSPHIFTNKFIEMIFVLNGFEGDKLKFSEPFEREGARELALLGNARYAQRAQLYNFLLENMSDEQKLQISMKLCNEVLEEVIDGKLP-LCDNPSQITDHCTEAVLKDAFAILCSPEIKLTTSK------EEXXXXXXXXXXXXXXXGGNVASQLAAAKGKLLSKMSKKNFLENVVPVLIGLKHTLEAKHSPLTRYLLHYIRELFKLYRQEVKDIFMNTDPQMAMEVEYDLRQYD 554          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: A0A7S0PWK8_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWK8_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.010e-56
Identity = 132/317 (41.64%), Postives = 178/317 (56.15%), Query Frame = 1
Query:   40 LVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAEEAD-----------GSVRR--RMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVDGQ-------------LPVIADNDDHHTRAK-----AENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKEEAA 897
            LVR+H +L+LS LLLQDY+KWRGLL  RFL   AD D  VA+L+  TL  PLL + P +F NNFVE++FVLN  S HP  AAAA+     A            GS  R  R+ +Y  +L +MSDE KI VTA++A +IL  A++               L VI + +   T        A NVL DAF +L  P +KVG                    ++    A   A    AA+ +LLSK+SRKHLIE V+P++ +LK +L+   SPLLR+LM Y+ E+FR Y  EVKE L++DPTL  E+ +D +++ K + A
Sbjct:  289 LVRKHGVLMLSTLLLQDYIKWRGLLFHRFLVASADKDEGVAKLAEMTLCGPLLGRYPKLFFNNFVESLFVLNRCSAHPIYAAAASTGDNGAGIAVGFDGINLHGSSGRNSRIQMYKLMLSNMSDEEKIGVTARIAKEILGGALESNGDLGKVCRTPPNALSVIKEANSILTSRNQRDESAYNVLSDAFAILVSPSLKVG------------RVGTNNEEEIEESDANKPAQIAVAAKGKLLSKISRKHLIEIVLPILCNLKEILQESCSPLLRDLMRYIVEIFRVYKTEVKEFLASDPTLLQEVEYDARQFQKAQKA 593          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: A0A7S1ZLL9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLL9_9STRA)

HSP 1 Score: 201 bits (511), Expect = 9.860e-55
Identity = 126/315 (40.00%), Postives = 180/315 (57.14%), Query Frame = 1
Query:   28 DSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAASAEEADGSV-------------RRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAV--DGQL-------------PVIADNDDHHTRAKAENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKE 888
             S  +VR+HA+LLLS L+LQDY+KWRGLL+ RFL    D D +V++L+  TL  PLL++   +F NNFVE++FVLN  + HP  AAA A     A  +V              +R+ IY  +L HM+DE KI +TA+LA  +L  A+  DG L             P  A       R  A +VL DAF VL+    KVG   GG               D ++   G A     A + +LLSK+SRKHLIE ++P++ +LK++LE   SPLL++LM YL ++FR Y  E +EVL++DPT+  E+ +D ++++K+
Sbjct:  685 SSSSMVRKHAILLLSSLILQDYIKWRGLLVHRFLVAYVDDDESVSKLAEMTLCGPLLSRQRNLFFNNFVESLFVLNRCTAHPIYAAAEANGDNGAGLAVGFEGINLSGMYGRMKRLNIYRMMLNHMTDEEKIGITARLAKVVLGGALESDGDLSMACRQSPPGMFSPSEARKSQQQRRECAISVLSDAFAVLTSKEAKVGRTSGG---------EEGDVEDNTTDANGTA--QFTAVKGKLLSKISRKHLIETILPILCNLKSILEANRSPLLKDLMRYLVDIFRSYRKEAREVLASDPTILQEIEYDTRQFEKQ 988          
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Match: W2LKG1_PHYPR (Cnd1 domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LKG1_PHYPR)

HSP 1 Score: 199 bits (506), Expect = 2.180e-54
Identity = 126/299 (42.14%), Postives = 171/299 (57.19%), Query Frame = 1
Query:   22 LQDSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPDAAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNN-----------YSEHPTCAAAAAASAEEADGSVRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVDGQLPVIADNDDHHTRAKAENVLRDAFVVLSCPGIKVGGGRGGGXXXXXXXXXXXXXADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGHSPLLRELMGYLRELFRHYADEVKEV-LSADPTLAHELAFDLKRYD 882
            L D   L+RR+ LLL SQL+LQDY+KWR  LL  FL    D D  +A L+R  L  PLL K+P IF N F+E IFVLN            Y +  T   A   +A        RR  +YN LLEHMSDE K+QV+ KL  ++L   +DG LP + +N    T +  E VL+D F +L  P IK+   + G              A+V+S         +AAA+ +LLSKMS+K+ +ENVVPV++ LK  LE  HSPL R L+ Y+RELF+ Y  EVK++ ++ DP +A E+ +DL++ D
Sbjct:  355 LLDESRLLRRNTLLLFSQLILQDYIKWRESLLRFFLRAAVDEDEELANLARHVLCGPLLQKSPHIFTNKFIEMIFVLNGIQGDKIKFSEPYEQEGTRELALLGNA-----LYPRRAKLYNFLLEHMSDEQKLQVSMKLCSEVLEEVMDGTLP-LCENPSQITDSCTEAVLKDTFAILCSPEIKLTSSKEGDDEDDGEDAATGENANVAS--------QIAAAKGKLLSKMSKKNFLENVVPVLIGLKHTLEAKHSPLTRYLLHYIRELFKMYRQEVKDIFMNTDPQMAMEVEYDLRQLD 639          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7445.2.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP86_ECTSI5.710e-8550.46Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JKF8_9PHAE5.440e-8049.39Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
W7TNH2_9STRA3.910e-7151.21Condensin-2 complex subunit d3 n=1 Tax=Nannochloro... [more]
A0A4D9D835_9STRA6.710e-7051.08Cnd1 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S4T9Y0_9STRA2.250e-5740.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0C9B1_9STRA5.460e-5739.68Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A662Y756_9STRA1.930e-5645.58Cnd1 domain-containing protein (Fragment) n=2 Tax=... [more]
A0A7S0PWK8_9STRA2.010e-5641.64Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S1ZLL9_9STRA9.860e-5540.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W2LKG1_PHYPR2.180e-5442.14Cnd1 domain-containing protein n=1 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7445contigP-wetherbeei_contig7445:643..2392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FP86
PFAMsCnd1
Model size912
Max annot lvl2759|Eukaryota
KEGG koko:K11491
Hectar predicted targeting categoryother localisation
Exons5
Evalue9.36e-86
EggNOG OGsKOG0413@1|root,KOG0413@2759|Eukaryota
Descriptionmeiotic chromosome condensation
Cds size912
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186981.9251611-CDS-P-wetherbeei_contig7445:642..8571683186981.9251611-CDS-P-wetherbeei_contig7445:642..857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7445 643..857 +
1683186981.9342482-CDS-P-wetherbeei_contig7445:1217..13231683186981.9342482-CDS-P-wetherbeei_contig7445:1217..1323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7445 1218..1323 +
1683186981.9422956-CDS-P-wetherbeei_contig7445:1708..18581683186981.9422956-CDS-P-wetherbeei_contig7445:1708..1858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7445 1709..1858 +
1683186981.9512463-CDS-P-wetherbeei_contig7445:1900..19931683186981.9512463-CDS-P-wetherbeei_contig7445:1900..1993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7445 1901..1993 +
1683186981.959331-CDS-P-wetherbeei_contig7445:2044..23921683186981.959331-CDS-P-wetherbeei_contig7445:2044..2392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7445 2045..2392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7445.2.5prot_P-wetherbeei_contig7445.2.5Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7445 643..2392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7445.2.5

>prot_P-wetherbeei_contig7445.2.5 ID=prot_P-wetherbeei_contig7445.2.5|Name=mRNA_P-wetherbeei_contig7445.2.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=304bp
MLRCTFLLQDSHPLVRRHALLLLSQLLLQDYLKWRGLLLFRFLATLADPD
AAVAQLSRFTLTNPLLAKTPTIFVNNFVETIFVLNNYSEHPTCAAAAAAS
AEEADGSVRRRMGIYNTLLEHMSDEHKIQVTAKLAHDILAAAVDGQLPVI
ADNDDHHTRAKAENVLRDAFVVLSCPGIKVGGGRGGGGSQSQGGSQSQGG
ADVSSGGAGVAAASVAAARTRLLSKMSRKHLIENVVPVVVSLKAVLERGH
SPLLRELMGYLRELFRHYADEVKEVLSADPTLAHELAFDLKRYDKEEAAR
RRRA
back to top

mRNA from alignment at P-wetherbeei_contig7445:643..2392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7445.2.5 ID=mRNA_P-wetherbeei_contig7445.2.5|Name=mRNA_P-wetherbeei_contig7445.2.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1750bp|location=Sequence derived from alignment at P-wetherbeei_contig7445:643..2392+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGATGCACCTTCCTCTTACAGGACTCGCACCCGCTAGTGCGGCG GCACGCGCTGCTGCTGCTGTCACAGTTGCTGCTGCAAGATTACCTCAAGT GGCGCGGCCTGCTGCTCTTCCGCTTCCTCGCTACGCTCGCCGACCCAGAC GCCGCCGTCGCGCAGCTCAGCCGTTTCACCCTCACCAACCCGTTGCTGGC TAAGACGCCCACAATGTGCGTGCAGTCTGGTCCGGTCTTATCTAGTGTCT CATTCGATTTCTGATTTGGCCCTTTGTACCGGCCCCGTCCCTGCCCTGCC GCATGCCGACCAATTGTCGCTGCCTCTTGCTTCTCGCCGTCGCCACGCGT CGCTTGTCTCCGTGGTAGCTACCCGGCCGCTGCCGCCACCGCTGCCCGCC GCTTGCCGCCGCCGCAGCAGCCACCTCGCCCACCGTAAATGCCGGGCGCC ACTGGCGCCGCTGCCGCAGGTCGGCTACGAAAGGCGAGCTGCAACAAACA TGAACGGCTTTCTCTCTTTGTTTTCTATCCCGGTCCGACGCGCTCTCGCC GCCCTCCGTCTGCCCTGCGCGCCAGCTTCGTCAACAACTTTGTGGAGACA ATTTTTGTGCTAAATAACTACTCGGAGCACCCGACCTGCGCGGCGGCGGC GGCGGCGAGTGCTGAGGAGGCCGACGGCAGCGTCACCATGGAAGGCATTA ACCTCAGCGGCGACAAGCAGGCGAGAGAGATGTCTTCGACGAATTAATGC CAATCTTGTCCTCGCCACGTTTAATACTTTTCCTCCATGAGCATGTCATC GCCCCGCACCAGTTTCTGTTGCTGCAGAAACTTTCGATCTATCATGGCTG ACGCCGTGAATGCCTGTCCCACCCGTCGGCCGCCGCCTGCGCAACCGCCG CTACGGTTGCTGCCACCGCCGCTGTTGCCACCGCCGCCGCTGTTGCCACC GCCGCTGTCCTTGCCGCCGCCGCTGACCCCGCCACTGCTCTGCTGCTATC ACTTCGTTGTCGTTGCCACCGGCCCAAAAAACACGCCACTGCAAATCCGC TGTGCAACCAAAACAGGTGCGCCGCCGGATGGGCATCTACAACACGCTTC TGGAGCACATGTCGGACGAGCACAAGATCCAAGTCACCGCTAAGCTCGCC CACGACATCCTGGCGGCCGCCGTCGACGGCCAGCTTCCCGTCATCGCCGA CAACGACGATCATCATGTTCATGGTGGCCGCGGCCGGCGCGCGGTGGCGG CGCCGGAGACGCGCGCTAAGGCCGAGAACGTGCTGCGGGACGCATTTGTC GTGCTATCGTGCCCCGGCATCAAGGTTGGCGGCGGCCGCGGCGGCGGCGG TGTCGGCGCTGCCGCCAGCACCATGGAGATCGATGACGATGAGCCGAGCC AGAGCCAGAGCCAGGGCGGGAGCCAGAGCCAGGGTGGCGCCGACGTCTCC AGCGGCGGCGCTGGCGTGGCGGCGGCCAGCGTGGCGGCGGCGCGGACGCG GCTACTCTCTAAAATGTCGCGGAAACACCTCATAGAGAACGTGGTACCAG TGGTCGTCAGCCTAAAGGCAGTGCTGGAGCGCGGCCACAGCCCGCTGCTG CGCGAGCTGATGGGCTACCTGCGGGAGCTGTTCCGCCACTACGCGGATGA AGTCAAGGAGGTGCTGTCAGCCGACCCGACGCTGGCGCACGAGCTCGCCT TCGACCTCAAGCGCTACGACAAGGAAGAGGCCGCCCGCCGCCGCCGCGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7445:643..2392+

>mRNA_P-wetherbeei_contig7445.2.5 ID=mRNA_P-wetherbeei_contig7445.2.5|Name=mRNA_P-wetherbeei_contig7445.2.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig7445:643..2392+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGATGCACCTTCCTCTTACAGGACTCGCACCCGCTAGTGCGGCG
GCACGCGCTGCTGCTGCTGTCACAGTTGCTGCTGCAAGATTACCTCAAGT
GGCGCGGCCTGCTGCTCTTCCGCTTCCTCGCTACGCTCGCCGACCCAGAC
GCCGCCGTCGCGCAGCTCAGCCGTTTCACCCTCACCAACCCGTTGCTGGC
TAAGACGCCCACAATCTTCGTCAACAACTTTGTGGAGACAATTTTTGTGC
TAAATAACTACTCGGAGCACCCGACCTGCGCGGCGGCGGCGGCGGCGAGT
GCTGAGGAGGCCGACGGCAGCGTGCGCCGCCGGATGGGCATCTACAACAC
GCTTCTGGAGCACATGTCGGACGAGCACAAGATCCAAGTCACCGCTAAGC
TCGCCCACGACATCCTGGCGGCCGCCGTCGACGGCCAGCTTCCCGTCATC
GCCGACAACGACGATCATCATACGCGCGCTAAGGCCGAGAACGTGCTGCG
GGACGCATTTGTCGTGCTATCGTGCCCCGGCATCAAGGTTGGCGGCGGCC
GCGGCGGCGGCGGTAGCCAGAGCCAGGGCGGGAGCCAGAGCCAGGGTGGC
GCCGACGTCTCCAGCGGCGGCGCTGGCGTGGCGGCGGCCAGCGTGGCGGC
GGCGCGGACGCGGCTACTCTCTAAAATGTCGCGGAAACACCTCATAGAGA
ACGTGGTACCAGTGGTCGTCAGCCTAAAGGCAGTGCTGGAGCGCGGCCAC
AGCCCGCTGCTGCGCGAGCTGATGGGCTACCTGCGGGAGCTGTTCCGCCA
CTACGCGGATGAAGTCAAGGAGGTGCTGTCAGCCGACCCGACGCTGGCGC
ACGAGCTCGCCTTCGACCTCAAGCGCTACGACAAGGAAGAGGCCGCCCGC
CGCCGCCGCGCC
back to top