mRNA_P-wetherbeei_contig7445.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7445.1.1
Unique NamemRNA_P-wetherbeei_contig7445.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.270e-9
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEHAAVRXXXXXXXXXXXXXXXXLVDRHVPAMAARLQ 219
            P  VRALAFV LGKLC+RD ALA  S+N+ VREL TA   AV XXXXXXXXXXXXXXXX  DRHV AMAA LQ
Sbjct:  211 PSPVRALAFVTLGKLCLRDKALAKRSVNLFVRELDTAAAPAVXXXXXXXXXXXXXXXXXXXDRHVAAMAACLQ 283          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.290e-9
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEHAAVRXXXXXXXXXXXXXXXXLVDRHVPAMAARLQ 219
            P  VRALAFV LGKLC+RD ALA  S+N+ VREL TA   AV XXXXXXXXXXXXXXXX  DRHV AMAA LQ
Sbjct: 1055 PSPVRALAFVTLGKLCLRDKALAKRSVNLFVRELDTAAAPAVXXXXXXXXXXXXXXXXXXXDRHVAAMAACLQ 1127          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: B8LBX8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBX8_THAPS)

HSP 1 Score: 52.4 bits (124), Expect = 4.370e-6
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVREL--STAEHAAVRXXXXXXXXXXXXXXXXLVDRHVPAMAARLQA 222
            P T+RA AF+ LGKLC+RD +LA   +N+L REL   +    AV+      XXXXXX    LVD+++P MA+ LQA
Sbjct: 1271 PSTIRAHAFITLGKLCLRDQSLAKDCLNILARELHEDSTSDPAVQSNALMVXXXXXXRYTNLVDKYLPFMASCLQA 1346          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: A0A482RAG2_9EURY (Cnd1 domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482RAG2_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 2.830e-5
Identity = 32/69 (46.38%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    7 TVRALAFVALGKLCMRDAALAATSINVLVRELST-AEHAAVRXXXXXXXXXXXXXXXXLVDRHVPAMAA 210
            TVRA A++ LGKLC+RDAALA   ++V VR+LS      AVR                LVD+HVP +AA
Sbjct:  607 TVRAHAYLCLGKLCLRDAALAKKYVSVFVRDLSPLCAPPAVRNNILFVLGDLTVRYTALVDQHVPIIAA 675          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: W7TNH2_9STRA (Condensin-2 complex subunit d3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNH2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.850e-5
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEHAAV 126
            P +VRA AF+ALGK+C+RD ALA  ++NV VRELS +  AA+
Sbjct:  727 PNSVRAHAFLALGKICLRDKALAKENVNVFVRELSLSSSAAI 768          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: A0A4D9D835_9STRA (Cnd1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D835_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 5.280e-5
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEHAA 123
            P +VRA AF+ALGK+C+RD ALA  ++NV VRELS +  AA
Sbjct:  314 PNSVRAHAFLALGKICLRDKALAKENVNVFVRELSVSSSAA 354          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: A0A7D9IK33_PARCT (Condensin-2 complex subunit D3 isoform X2 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IK33_PARCT)

HSP 1 Score: 49.3 bits (116), Expect = 5.290e-5
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    4 PTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEHAAVRXXXXXXXXXXXXXXXXLVDRHVPAMAARLQ 219
            PTV+A AF+ LGKLC+++  LA   I  L +EL T++  AVR                LVDR++P +A  L+
Sbjct:  763 PTVKAHAFITLGKLCLQNEMLAKDCIAALTKELETSQDPAVRNNITVVLCDLCVRYTNLVDRYIPNIARGLR 834          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: A0A067CGD4_SAPPC (Cnd1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGD4_SAPPC)

HSP 1 Score: 49.3 bits (116), Expect = 5.340e-5
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEHAAVRXXXXXXXXXXXXXXXXLVDRHVPAMAARL 216
            P ++RALAFVA+GK C+ D A A  SI + +REL T+   A+R                +VD ++P +A+ L
Sbjct:  868 PASIRALAFVAVGKACLADEAFAKESITMFMRELQTSPIEAIRSNILLVLGDLCIRWTSVVDVYIPTIASSL 939          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: A0A7S0L0J3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0L0J3_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 6.990e-5
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEH---AAVRXXXXXXXXXXXXXXXXLVDRHVPAMAARLQA 222
            P   RA AF+ALGKLC+RD +LA   +N+L REL         +V+                LVDR++P MAA LQ+
Sbjct:  196 PDAARAHAFIALGKLCLRDESLAKNCLNILARELHQNMDDMSPSVQSNALLVLGDLCVKYTNLVDRYLPVMAACLQS 272          
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Match: A0A7S0PWK8_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWK8_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 7.130e-5
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 1
Query:    1 PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEH---AAVRXXXXXXXXXXXXXXXXLVDRHVPAMAARLQA 222
            P   RA AF+ALGKLC+RD +LA   +N+L REL         +V+                LVDR++P MAA LQ+
Sbjct:  196 PDAARAHAFIALGKLCLRDESLAKNCLNILARELHQNMDDMSPSVQSNALLVLGDLCVKYTNLVDRYLPVMAACLQS 272          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JKF8_9PHAE1.270e-973.97Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FP86_ECTSI1.290e-973.97Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
B8LBX8_THAPS4.370e-648.68Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A482RAG2_9EURY2.830e-546.38Cnd1 domain-containing protein (Fragment) n=1 Tax=... [more]
W7TNH2_9STRA2.850e-559.52Condensin-2 complex subunit d3 n=1 Tax=Nannochloro... [more]
A0A4D9D835_9STRA5.280e-560.98Cnd1 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7D9IK33_PARCT5.290e-538.89Condensin-2 complex subunit D3 isoform X2 (Fragmen... [more]
A0A067CGD4_SAPPC5.340e-537.50Cnd1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A7S0L0J3_9STRA6.990e-540.26Hypothetical protein (Fragment) n=1 Tax=Asterionel... [more]
A0A7S0PWK8_9STRA7.130e-540.26Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7445contigP-wetherbeei_contig7445:120..342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP86
PFAMsCnd1
Model size223
Max annot lvl2759|Eukaryota
KEGG koko:K11491
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.11e-10
EggNOG OGsKOG0413@1|root,KOG0413@2759|Eukaryota
Descriptionmeiotic chromosome condensation
Cds size222
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186981.9011643-CDS-P-wetherbeei_contig7445:119..3411683186981.9011643-CDS-P-wetherbeei_contig7445:119..341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7445 120..341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7445.1.1prot_P-wetherbeei_contig7445.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7445 120..341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7445.1.1

>prot_P-wetherbeei_contig7445.1.1 ID=prot_P-wetherbeei_contig7445.1.1|Name=mRNA_P-wetherbeei_contig7445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
PPTVRALAFVALGKLCMRDAALAATSINVLVRELSTAEHAAVRSNALVVL
GDLCVRYTALVDRHVPAMAARLQA
back to top

mRNA from alignment at P-wetherbeei_contig7445:120..342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7445.1.1 ID=mRNA_P-wetherbeei_contig7445.1.1|Name=mRNA_P-wetherbeei_contig7445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=223bp|location=Sequence derived from alignment at P-wetherbeei_contig7445:120..342+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGACGGTGCGTGCACTGGCCTTCGTGGCGCTCGGCAAGCTCTGCAT GCGGGACGCGGCGCTGGCAGCGACGTCCATCAACGTGCTGGTACGGGAGC TGTCGACGGCAGAGCACGCCGCCGTCCGCAGCAACGCGTTGGTAGTGCTG GGCGATTTGTGCGTCCGCTACACGGCGCTTGTCGACCGCCACGTGCCCGC CATGGCGGCACGCCTCCAGGCGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7445:120..342+

>mRNA_P-wetherbeei_contig7445.1.1 ID=mRNA_P-wetherbeei_contig7445.1.1|Name=mRNA_P-wetherbeei_contig7445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig7445:120..342+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGACGGTGCGTGCACTGGCCTTCGTGGCGCTCGGCAAGCTCTGCAT
GCGGGACGCGGCGCTGGCAGCGACGTCCATCAACGTGCTGGTACGGGAGC
TGTCGACGGCAGAGCACGCCGCCGTCCGCAGCAACGCGTTGGTAGTGCTG
GGCGATTTGTGCGTCCGCTACACGGCGCTTGTCGACCGCCACGTGCCCGC
CATGGCGGCACGCCTCCAGGCG
back to top