mRNA_P-wetherbeei_contig744.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig744.2.1
Unique NamemRNA_P-wetherbeei_contig744.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A3C0TTP5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTP5_9PROT)

HSP 1 Score: 244 bits (622), Expect = 8.280e-78
Identity = 125/242 (51.65%), Postives = 167/242 (69.01%), Query Frame = 1
Query:   16 RMALFCLAGVSLAACQNSNYILSPAAPTPDVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPAIPNTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANP-----------AAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDVAR 708
            R+A+    G  L ACQ S  ++ PA P   ++D++PITV+P +E L LSP   G+ L   D   I  FAGGYLQ GHGPL+I++  +P++P A  QM A+N  L ERGV  +++EWRIA+PD A+            AAAPA   + F+YTRYVA+ E+ C  W KD + +HDN+ WENFGCA Q+N+AAMV DPLDLKRPR   P+D DRRTVV+K+YR+G+ATAA+R+ AEKG +S+VA+
Sbjct:   21 RLAVLAALGGMLGACQ-SEQVMFPATPQKKLEDRYPITVAPKTESLTLSPRPIGKKLGDKDTSQINGFAGGYLQQGHGPLAIIMSGVPSSPQALAQMQAVNGALRERGVARSQIEWRIASPDPASDSGESPGAPAGKAAAPAQ--LTFTYTRYVASVEKPCENWSKDFSDYHDNKSWENFGCAHQHNLAAMVADPLDLKRPRDVDPIDADRRTVVLKSYREGKATAAERSEAEKGMVSEVAK 259          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A2N3EC66_9PROT (Pilus assembly protein CpaD n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EC66_9PROT)

HSP 1 Score: 134 bits (336), Expect = 4.340e-35
Identity = 79/203 (38.92%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  103 DVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPA-IPNTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDVAR 708
            D     PI+V P    LN+       GL   + R I  FA  Y + GHG L++  P+   N   A   ++ +   LAE GV    + +   TP +A+   A  A P++ SY RYVA A   CG+W   +A  + N P  NFGCA QNN+AAM+ DP DL +PR  TP D  RR  V++ YR+GE TA  RT  + G +S V++
Sbjct:   35 DAARVHPISVQPDVATLNIDVPPGQPGLTAENRRAIAGFAASYRERGHGSLTVSTPSGSTNATTATGVLSDVRDALAEHGVSGDALAY---TPYSAS---ASGAAPLILSYKRYVAKAST-CGDWSASLATDYKNVPPPNFGCATQNNLAAMIADPADLLKPRGMTPADASRRNTVLEKYREGEPTATARTDQDSGAVSRVSQ 230          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A2D4VF09_9HYPH (Uncharacterized protein n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D4VF09_9HYPH)

HSP 1 Score: 117 bits (292), Expect = 2.000e-28
Identity = 80/224 (35.71%), Postives = 117/224 (52.23%), Query Frame = 1
Query:   34 LAGVSLAACQNSNYILSPAAPTPDVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPAIP-NTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDV 702
            +A ++LA C   N     A  TP+  +  PITVS  +  L L   +    L       I  FA  Y + GHGP+ + +P    N   A+  +N ++  LA+ GV   +V ++         A    + P+V ++ RYVA A   CG+W  + + +  N    NFGCA QNN+AAMV DP DL  PR   P D DRR+ V++ YRKGE+TA QR+ ++   +S+V
Sbjct:   27 VAMLALAGCGGFNG-REEALYTPE--NVHPITVSKDTATLKLDAAMDLGYLNGRQKAQIASFARAYTERGHGPMVVSVPDRSLNKGAASDFLNDVSRALADEGVTDDRVVYK-----PYQVAGDKNSAPVVMTFNRYVAQASP-CGDWSANYSYNPKNLNPPNFGCATQNNLAAMVADPSDLVHPRTMDPADADRRSTVLEKYRKGESTATQRSDSDSAAVSEV 241          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: UPI001781EC3F (CpaD family pilus assembly protein n=2 Tax=Agrobacterium sp. AGB01 TaxID=2769302 RepID=UPI001781EC3F)

HSP 1 Score: 116 bits (291), Expect = 2.110e-28
Identity = 76/206 (36.89%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   49 LAACQNSNYILSPAAPTPDVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPA-IPNTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHD-NQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATA 660
            L AC   + + + A P  D + + PIT++     +++  +     L T  A  I  F   Y     G + I LP+  PN+  A++    I T+L   GVPA K+   + T  AA P     A P+  SY   V A   +CGEWP+D+  +   N+ W NFGCA QNN+AA + +P+DL  PR  TP+D +RR+VVI  YR G+ TA
Sbjct:   29 LQACGTRDGMNTGAIPD-DYRTRHPITLNEAEHTIDIPVSSGDSRLTTPAADNIRGFVSSYKGTSTGIVQIQLPSGSPNSAAASRMGKQIRTILTGSGVPAGKI---VETVYAAGPQGD--AAPIRLSYVA-VTAMTGQCGEWPEDLTSNTSKNRNWHNFGCATQNNLAAQIANPMDLVAPRGMTPIDAERRSVVIDGYRNGDNTA 227          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A4R3M7E6_9HYPH (Pilus assembly protein CpaD n=1 Tax=Tepidamorphus gemmatus TaxID=747076 RepID=A0A4R3M7E6_9HYPH)

HSP 1 Score: 116 bits (291), Expect = 2.270e-28
Identity = 81/230 (35.22%), Postives = 118/230 (51.30%), Query Frame = 1
Query:   16 RMALFCLAGVSLAACQNSNYILSPAAPTPDVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLP-AIPNTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDV 702
            R+A+       LAACQ S+ +++ + PT  V+ ++PI + P    L+L+ T  G GL + D  ++ +F   + + G G L ++ P    N   AA  +  +  +  + G+P   V   +       P      GP+  SY R VA  E  CG WP +IA +  N P+ENFGCA Q N+AAMV DP DL  PR  TP D  RR  V   YR+GE  +    + + G IS+V
Sbjct:   15 RLAVLAALTALLAACQ-SDRVVTGSVPT-SVEQRYPIGIIPERPKLDLNAT--GYGLSSPDRAMVEEFVLSWRERGTGGLDVLTPIGTANEAEAASVVAEVKAIAYDFGMPVEAVS--VTGYHTTQPF-----GPVRLSYDRLVAKLE--CGAWPTNIAENWRNVPYENFGCATQKNLAAMVEDPRDLAGPRPMTPRDARRRDEVFDKYRRGEDPSTVYQSDDAGQISEV 231          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: UPI00142213DC (CpaD family pilus assembly protein n=1 Tax=Parvibaculum indicum TaxID=562969 RepID=UPI00142213DC)

HSP 1 Score: 116 bits (290), Expect = 3.430e-28
Identity = 71/199 (35.68%), Postives = 107/199 (53.77%), Query Frame = 1
Query:  109 KDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPAIP-NTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDV 702
            ++  PITVS     L L   +    L       +  FA  Y + GHGP+ + +P    N   A+  +N ++  LA+ GV   +V ++         AA   + P+V ++ RYVA A   CG+W  + + +  N    NFGCA QNN+AA++ DP DL  PR   P D +RR+VV+  YRKGE+TAAQR  ++  ++S+V
Sbjct:   43 ENMHPITVSKDVATLKLDAAMDLGYLNDRQKMQVAAFARAYTERGHGPIVVSVPDRSLNKGAASYFLNDVSRALADEGVTDDRVVYK-----PYQVAADKTSAPVVMTFNRYVAQASP-CGDWSMNYSYNPKNLNPPNFGCATQNNLAAVIADPADLVHPRTMDPADAERRSVVLDKYRKGESTAAQRADSDSASVSEV 235          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A3B9YPQ2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9YPQ2_9PROT)

HSP 1 Score: 115 bits (288), Expect = 8.980e-28
Identity = 84/235 (35.74%), Postives = 112/235 (47.66%), Query Frame = 1
Query:   19 MALFCLAGVSLAACQNSNYILSPAAPTPDVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPAIPNTPMAAKQM--NAINTVLAERGVPAAKVEWRIATPDAANPA-AAPAAGPMVFSYTRYVAAAERRCGE--WPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDVAR 708
            +AL  L GV  A C +  Y     A    V  +FPITV P    LN+ P  A  GL   D   +  FA  +   G G +++ +P      +A + +  +A+   LA  GVP A ++       AA PA   P   P+  SY    A A   C E  W  ++     N PW NFGCA QNN+AAMV +P DL  PR T  VDV RR  V+  +R  + TA +R   E G +S  A+
Sbjct:   19 LALSALMGVMAAGCSHPLYNSEEQAI--QVDQRFPITVEPQMTNLNIYPNGANHGLSADDRARVVAFAERWKARGQGAITVAIPQGGADGLAGEHLAHHAVKA-LASAGVPRANIQT------AAYPAHRMPGGAPVTISYVGLTAVAPD-CSELGWEDNLGFAPRNMPWNNFGCATQNNLAAMVNNPRDLIEPRPTDDVDVRRRMKVVDDFRNAKPTATKRQQEESGNVSAAAK 243          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A081BBB6_9HYPH (Pilus biogenesis lipoprotein CpaD n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BBB6_9HYPH)

HSP 1 Score: 114 bits (284), Expect = 2.020e-27
Identity = 80/221 (36.20%), Postives = 104/221 (47.06%), Query Frame = 1
Query:   49 LAACQNSNYILSPAAPTPDVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPA-IPNTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDVAR 708
            LAAC   N +        D   + PI V P      +        L   D   +   A  + + GHG L+I  P+  PNT +A      I  +L E G+  + +        AAN AA     P++ SY RYVA     CG W  D A +  N    N GCA QNNMAA++ DP DLK PR T P    RR  V+  YRKGE+TA +R   E G +S+V+R
Sbjct:   15 LAACGGFNGVEQAQY---DAARRHPIAVDPQIMTYEIPAAPDKIALTLEDKSALRALARAFKERGHGSLNIAAPSGSPNTGVALNLSTEIGQLLHEEGIAHSDISHGTYRASAANSAA-----PLILSYRRYVATPSP-CGNWG-DYAYNPKNVVTSNLGCASQNNMAAILADPADLKGPRGTDPAYAPRRDEVLTKYRKGESTATERVEEESGNVSEVSR 225          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A2D8XC78_9HYPH (Pilus assembly protein CpaD n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D8XC78_9HYPH)

HSP 1 Score: 114 bits (284), Expect = 3.910e-27
Identity = 73/202 (36.14%), Postives = 100/202 (49.50%), Query Frame = 1
Query:  103 DVKDKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPA-IPNTPMAAKQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDVA 705
            D + + PI+V P    L +        L   D   I  FA  Y   GHG L+I  P+  PN   A   +      LA+ G+  ++V +      +AN +A     P++ +Y RYVA+A   CG W KD A   +N    NFGCA QNN+AA+V DP DL  PR   P    RR  V++ YR GE T A  +    G++S+VA
Sbjct:   57 DARYQHPISVDPQVVTLQMDVPKDKVALSLADKAAIDAFARSYKSRGHGTLTIAAPSGSPNEAAAVSIVAETRAALADAGLNGSEVGYAAYRASSANSSA-----PVILTYRRYVASASP-CGNWSKDYAFAPNNARTPNFGCATQNNLAAIVADPADLIGPREWDPAYAPRRDEVVEKYRTGEVTEAAESGNSSGSVSEVA 252          
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Match: A0A2G2LW75_9PROT (Pilus assembly protein CpaD n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2LW75_9PROT)

HSP 1 Score: 112 bits (280), Expect = 1.380e-26
Identity = 71/198 (35.86%), Postives = 102/198 (51.52%), Query Frame = 1
Query:  112 DKFPITVSPHSEILNLSPTLAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPAIPNTPMAA-KQMNAINTVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCGEWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRRTVVIKAYRKGEATAAQRTAAEKGTISDV 702
            D+  ITV    E L+L+      GL     R +  +A  YL  G+GPL+I  P   +T + A + +     +L E G+     +W +        A+     P++ S+TRY A A+   G W +++  H  N   +NFGCA+  N AAM+ +P DL RPRAT P    RR  V+  Y  GEAT+ +RTA EKGT+S  
Sbjct:   57 DQHKITVQQTQENLSLALAPNMAGLTEAQKRKLHGYAAAYLDHGYGPLAISAPQGADTSIVAGRAIQQTRKILFEAGI-----DWAVIAKGRYQ-ASGTTGSPLLLSFTRYEARAQGCDGRW-RNLVIHPGNNESDNFGCALATNTAAMIANPYDLVRPRATEPASTARRQTVMDKYIAGEATSGKRTADEKGTVSSA 247          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig744.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TTP5_9PROT8.280e-7851.65Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2N3EC66_9PROT4.340e-3538.92Pilus assembly protein CpaD n=1 Tax=Alphaproteobac... [more]
A0A2D4VF09_9HYPH2.000e-2835.71Uncharacterized protein n=1 Tax=Parvibaculum sp. T... [more]
UPI001781EC3F2.110e-2836.89CpaD family pilus assembly protein n=2 Tax=Agrobac... [more]
A0A4R3M7E6_9HYPH2.270e-2835.22Pilus assembly protein CpaD n=1 Tax=Tepidamorphus ... [more]
UPI00142213DC3.430e-2835.68CpaD family pilus assembly protein n=1 Tax=Parviba... [more]
A0A3B9YPQ2_9PROT8.980e-2835.74Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A081BBB6_9HYPH2.020e-2736.20Pilus biogenesis lipoprotein CpaD n=1 Tax=Tepidica... [more]
A0A2D8XC78_9HYPH3.910e-2736.14Pilus assembly protein CpaD n=2 Tax=Hyphomicrobial... [more]
A0A2G2LW75_9PROT1.380e-2635.86Pilus assembly protein CpaD n=1 Tax=Robiginitomacu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig744contigP-wetherbeei_contig744:1447..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_0234
Preferred namecpaD
PFAMsPilus_CpaD
Model size711
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02281
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.7e-31
EggNOG OGsCOG5461@1|root,COG5461@2|Bacteria,1MWWE@1224|Proteobacteria,2TU2Q@28211|Alphaproteobacteria,1JPGN@119043|Rhodobiaceae
DescriptionPilus biogenesis CpaD protein (pilus_cpaD)
Cds size693
COG categoryN
BRITEko00000,ko02035,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186981.467882-UTR-P-wetherbeei_contig744:1446..14641683186981.467882-UTR-P-wetherbeei_contig744:1446..1464Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig744 1447..1464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186981.4802375-CDS-P-wetherbeei_contig744:1464..21571683186981.4802375-CDS-P-wetherbeei_contig744:1464..2157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig744 1465..2157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig744.2.1prot_P-wetherbeei_contig744.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig744 1465..2157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig744.2.1

>prot_P-wetherbeei_contig744.2.1 ID=prot_P-wetherbeei_contig744.2.1|Name=mRNA_P-wetherbeei_contig744.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=231bp
MALFCLAGVSLAACQNSNYILSPAAPTPDVKDKFPITVSPHSEILNLSPT
LAGQGLQTTDARLITDFAGGYLQDGHGPLSIVLPAIPNTPMAAKQMNAIN
TVLAERGVPAAKVEWRIATPDAANPAAAPAAGPMVFSYTRYVAAAERRCG
EWPKDIARHHDNQPWENFGCAVQNNMAAMVTDPLDLKRPRATTPVDVDRR
TVVIKAYRKGEATAAQRTAAEKGTISDVAR*
back to top

mRNA from alignment at P-wetherbeei_contig744:1447..2157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig744.2.1 ID=mRNA_P-wetherbeei_contig744.2.1|Name=mRNA_P-wetherbeei_contig744.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig744:1447..2157+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGCAAATTTTGGCAGGATGGCTTTGTTCTGTCTTGCGGGGGTCAGTCT GGCGGCCTGCCAGAACAGCAATTATATTTTGTCGCCTGCCGCGCCGACCC CTGATGTCAAAGACAAGTTTCCCATCACGGTCAGCCCGCATTCGGAAATT CTGAACCTTTCCCCGACCCTTGCCGGCCAGGGCTTGCAGACAACCGATGC GCGCCTGATTACGGATTTTGCGGGCGGTTATTTGCAGGATGGGCACGGAC CCTTGTCCATCGTGCTGCCGGCCATTCCCAACACACCCATGGCCGCAAAA CAGATGAACGCCATCAATACCGTGCTGGCAGAACGCGGCGTTCCGGCGGC AAAGGTAGAATGGCGGATTGCCACCCCGGATGCCGCCAATCCGGCAGCCG CGCCTGCAGCCGGTCCGATGGTATTCAGCTATACCCGCTATGTGGCGGCG GCAGAACGCCGATGCGGTGAGTGGCCAAAAGATATCGCCAGGCACCATGA TAATCAGCCATGGGAAAATTTTGGCTGCGCCGTGCAAAATAATATGGCGG CAATGGTGACCGACCCGCTTGATCTGAAACGGCCCCGTGCGACAACGCCG GTCGATGTCGATCGCCGCACAGTCGTGATCAAGGCCTATCGCAAGGGTGA AGCAACGGCGGCACAGCGAACCGCGGCAGAAAAAGGTACAATCAGCGACG TGGCAAGATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig744:1447..2157+

>mRNA_P-wetherbeei_contig744.2.1 ID=mRNA_P-wetherbeei_contig744.2.1|Name=mRNA_P-wetherbeei_contig744.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=693bp|location=Sequence derived from alignment at P-wetherbeei_contig744:1447..2157+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTTGTTCTGTCTTGCGGGGGTCAGTCTGGCGGCCTGCCAGAACAG
CAATTATATTTTGTCGCCTGCCGCGCCGACCCCTGATGTCAAAGACAAGT
TTCCCATCACGGTCAGCCCGCATTCGGAAATTCTGAACCTTTCCCCGACC
CTTGCCGGCCAGGGCTTGCAGACAACCGATGCGCGCCTGATTACGGATTT
TGCGGGCGGTTATTTGCAGGATGGGCACGGACCCTTGTCCATCGTGCTGC
CGGCCATTCCCAACACACCCATGGCCGCAAAACAGATGAACGCCATCAAT
ACCGTGCTGGCAGAACGCGGCGTTCCGGCGGCAAAGGTAGAATGGCGGAT
TGCCACCCCGGATGCCGCCAATCCGGCAGCCGCGCCTGCAGCCGGTCCGA
TGGTATTCAGCTATACCCGCTATGTGGCGGCGGCAGAACGCCGATGCGGT
GAGTGGCCAAAAGATATCGCCAGGCACCATGATAATCAGCCATGGGAAAA
TTTTGGCTGCGCCGTGCAAAATAATATGGCGGCAATGGTGACCGACCCGC
TTGATCTGAAACGGCCCCGTGCGACAACGCCGGTCGATGTCGATCGCCGC
ACAGTCGTGATCAAGGCCTATCGCAAGGGTGAAGCAACGGCGGCACAGCG
AACCGCGGCAGAAAAAGGTACAATCAGCGACGTGGCAAGATGA
back to top