mRNA_P-wetherbeei_contig7434.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A835YSL0_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL0_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 8.080e-17 Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 208 QIRAQFAAAGAPLVGDWSYMPMAGYCHDNLDDEASFLSRVVRTRAPTAAIGLQCSELSFDGRAVKAGRPWWRGG 429
QIRAQFAAAGAPLVGD +Y PMAGY HD+++D + L+R+ IGLQ + L F+GR V AG PWWR G
Sbjct: 305 QIRAQFAAAGAPLVGDATYAPMAGYLHDDVEDREAALARMRHGVKVAHVIGLQSAVLRFEGREVVAGEPWWRRG 378
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A0G4EST6_VITBC (PseudoU_synth_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EST6_VITBC) HSP 1 Score: 66.6 bits (161), Expect = 3.480e-9 Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 1
Query: 103 ARYRSRFPGVFSLCQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMAGYCHDNLDDEASFLS-----------RVVRTRA-PTAAIGLQCSELSFDGRAVKAGRPWWRGGL 432
AR + R G+ +P Y V L+ Q+RAQFAA GAP+VGD Y PM+G+ L ++ ++ R++ T A P IGL + L +G ++AG PWWRGGL
Sbjct: 400 ARMQQRLEGLLQDGASPY----YELQVELITGRTHQLRAQFAAMGAPIVGDTMYAPMSGFFVHTLSEKDEQVAPTTTNGPMAAKRLMDTAAEPEIPIGLHAAVLELNGTRIEAGPPWWRGGL 517
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A022R0Z8_ERYGU (PseudoU_synth_2 domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R0Z8_ERYGU) HSP 1 Score: 60.5 bits (145), Expect = 4.170e-7 Identity = 50/150 (33.33%), Postives = 63/150 (42.00%), Query Frame = 1
Query: 70 LKTAWHHCSAVARYRSRFPGVFSL---------CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMA-----------------GYCHDNLDDEA--SFLSRVVRTRAPTAAIGLQCSELSFDG----RAVKAGRPWWR 423
L WH C + P S+ C P Y V LL QIRAQFAA GAPLVGD YMP A Y D++ A +++R + P AIGLQ ++S+D + +AGRPWWR
Sbjct: 336 LVNGWHLCQLEVLECRKIPWPSSIAEEKNRVEDCGWPSKDFAYECKVNLLTGRTHQIRAQFAACGAPLVGDSMYMPAAIAEVDRPELNPFGKNKKEYASDDIKAVAVEEWIAR--HGKEPIVAIGLQACKISWDSDEEQHSYEAGRPWWR 483
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: UPI00098DFE0E (RNA pseudouridine synthase 6, chloroplastic isoform X1 n=3 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DFE0E) HSP 1 Score: 60.1 bits (144), Expect = 5.710e-7 Identity = 42/113 (37.17%), Postives = 55/113 (48.67%), Query Frame = 1
Query: 142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMAGYCHDNL---------------DDEASFLSRVVRT--RAPTAAIGLQCSELSFDGRAV--KAGRPWWR 423
C PL + Y + L+ QIRAQFAA GAP+VGD Y P A +N +D+ + V + P AIGLQ S++S+DG V +AG PWWR
Sbjct: 375 CGWPLKTSAYECRINLITGKTHQIRAQFAAIGAPIVGDSIYTPAAMAQIENPHINPVGASKREYTSEEDKEKAIEEWVSCHGKEPNTAIGLQASQISWDGGKVCYEAGTPWWR 487
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A803M203_CHEQI (PseudoU_synth_2 domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M203_CHEQI) HSP 1 Score: 59.7 bits (143), Expect = 7.560e-7 Identity = 40/113 (35.40%), Postives = 54/113 (47.79%), Query Frame = 1
Query: 142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMA------------GYCHDNL--DDEASFLSR---VVRTRAPTAAIGLQCSELSFDG--RAVKAGRPWWR 423
C P+ + Y V LL QIRAQFAA GAP++GD YMP + G C + +DE + + + PT AIGL+ ++S+D AG PWWR
Sbjct: 365 CGWPVENLAYECTVDLLTGRTHQIRAQFAACGAPIIGDSMYMPASLAEKATPNINPLGKCKEEYTSEDEKNIAIDNWIALHGKEPTVAIGLRACQISWDSGEHIYNAGSPWWR 477
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A7G2RM09_BETVV (PseudoU_synth_2 domain-containing protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A7G2RM09_BETVV) HSP 1 Score: 59.3 bits (142), Expect = 1.020e-6 Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 1
Query: 142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMAGY---------------CHDNLDDEASFLSRVVRT--RAPTAAIGLQCSELSFDG--RAVKAGRPWWR 423
C+ P+ + Y V LL QIRAQFAA GAP+VGD Y+P + + + D++ + V + PT +IGLQ ++S+D KAG PWWR
Sbjct: 366 CEWPVKNTAYECTVNLLTGRTHQIRAQFAACGAPIVGDSMYLPASVAEIVTPEVNPYGKYKGVYSSEDEKRIAIDNWVALHGKEPTVSIGLQACQISWDNGEHMYKAGSPWWR 478
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A7J7C4A2_TRIWF (PseudoU_synth_2 domain-containing protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C4A2_TRIWF) HSP 1 Score: 57.0 bits (136), Expect = 6.140e-6 Identity = 48/150 (32.00%), Postives = 65/150 (43.33%), Query Frame = 1
Query: 55 NEQSILKTAWHHCS--AVARYRSRFPGVF-------SLCQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMP--MAGYCHDNLDDEASFLSRVVRT---------------RAPTAAIGLQCSELSFDG--RAVKAGRPWW 420
+E+SI+ WH C + + +P VF C PL Y + LL QIRAQFAA+GAPLVGD YMP +A L+ +F+ + P AIGLQ ++S+D +A PWW
Sbjct: 325 SEESIV--GWHLCQLEVMGCKKIPWPNVFIEQKYCVENCGWPLKDYAYECKINLLTGRTHQIRAQFAASGAPLVGDSMYMPAAVAEMASPGLNPYGTFMKEYTNDDHKTIAVEEWIAQHGKEPNNAIGLQACQISWDDGEHNYEARSPWW 472
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A4V4H9B0_MUSBA (PseudoU_synth_2 domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4V4H9B0_MUSBA) HSP 1 Score: 57.0 bits (136), Expect = 6.190e-6 Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMP--MAGYCHDNL-------------DDEASFLSRVVRT--RAPTAAIGLQCSELSFDGR--AVKAGRPWWR 423
C P Y + LL QIRAQFAA GAP+VGD Y+P MA + ++ D++ + + + + + P AAIGLQ S +S+D + +AG PWWR
Sbjct: 370 CGWPFKKVAYECKINLLTGKTHQIRAQFAAIGAPIVGDSMYIPSVMAKMANPSINPFDRKWKEYASEDEKMAAIEQWIAQHGKEPNAAIGLQASHISWDDGTCSYEAGAPWWR 482
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: UPI001929B579 (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929B579) HSP 1 Score: 56.6 bits (135), Expect = 8.330e-6 Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 1
Query: 142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMP-------------MAGYCHD--NLDDEASFLSRVVRT--RAPTAAIGLQCSELSFDGR--AVKAGRPWWRGGLA 435
C P S Y + LL Q+RAQ AA GAPL+GD YMP Y + + +D+ + + + + P+AAIGLQ S++S+D + +AG PWWR G+A
Sbjct: 367 CGWPSWSVAYECKINLLTGKTHQVRAQLAAIGAPLIGDSMYMPAVISEKANPLINPFGEYRKEYTSHEDKMAAVEEWISQYGKEPSAAIGLQASQISWDNGECSYEAGAPWWRHGIA 483
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A7I4DQ79_PHYPA (PseudoU_synth_2 domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DQ79_PHYPA) HSP 1 Score: 56.2 bits (134), Expect = 9.760e-6 Identity = 36/90 (40.00%), Postives = 44/90 (48.89%), Query Frame = 1
Query: 208 QIRAQFAAAGAPLVGDWSYMPMAGY-----------CHDNLDDEASFLSRVVRTR-----APTAAIGLQCSELSFDG--RAVKAGRPWWR 423
QIR QFAA APLVGD YMP + DE S+ S + R P +GLQ S +S++G + KAGRPWWR
Sbjct: 278 QIRVQFAALDAPLVGDSVYMPSVVARKKSPEVDPFRAESMIQDEGSWNSAIENWRDLHGLEPVCGLGLQASVISWEGEKQVFKAGRPWWR 367 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7434.2.1 >prot_P-wetherbeei_contig7434.2.1 ID=prot_P-wetherbeei_contig7434.2.1|Name=mRNA_P-wetherbeei_contig7434.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp MPMAGYCHDNLDDEASFLSRVVRTRAPTAAIGLQCSELSFDGRAVKAGRPback to top mRNA from alignment at P-wetherbeei_contig7434:2175..3087- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7434.2.1 ID=mRNA_P-wetherbeei_contig7434.2.1|Name=mRNA_P-wetherbeei_contig7434.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=913bp|location=Sequence derived from alignment at P-wetherbeei_contig7434:2175..3087- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7434:2175..3087- >mRNA_P-wetherbeei_contig7434.2.1 ID=mRNA_P-wetherbeei_contig7434.2.1|Name=mRNA_P-wetherbeei_contig7434.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig7434:2175..3087- (Phaeothamnion wetherbeei SAG_119_79)back to top |