mRNA_P-wetherbeei_contig7434.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7434.2.1
Unique NamemRNA_P-wetherbeei_contig7434.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A835YSL0_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.080e-17
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  208 QIRAQFAAAGAPLVGDWSYMPMAGYCHDNLDDEASFLSRVVRTRAPTAAIGLQCSELSFDGRAVKAGRPWWRGG 429
            QIRAQFAAAGAPLVGD +Y PMAGY HD+++D  + L+R+         IGLQ + L F+GR V AG PWWR G
Sbjct:  305 QIRAQFAAAGAPLVGDATYAPMAGYLHDDVEDREAALARMRHGVKVAHVIGLQSAVLRFEGREVVAGEPWWRRG 378          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A0G4EST6_VITBC (PseudoU_synth_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EST6_VITBC)

HSP 1 Score: 66.6 bits (161), Expect = 3.480e-9
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 1
Query:  103 ARYRSRFPGVFSLCQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMAGYCHDNLDDEASFLS-----------RVVRTRA-PTAAIGLQCSELSFDGRAVKAGRPWWRGGL 432
            AR + R  G+     +P     Y   V L+     Q+RAQFAA GAP+VGD  Y PM+G+    L ++   ++           R++ T A P   IGL  + L  +G  ++AG PWWRGGL
Sbjct:  400 ARMQQRLEGLLQDGASPY----YELQVELITGRTHQLRAQFAAMGAPIVGDTMYAPMSGFFVHTLSEKDEQVAPTTTNGPMAAKRLMDTAAEPEIPIGLHAAVLELNGTRIEAGPPWWRGGL 517          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A022R0Z8_ERYGU (PseudoU_synth_2 domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R0Z8_ERYGU)

HSP 1 Score: 60.5 bits (145), Expect = 4.170e-7
Identity = 50/150 (33.33%), Postives = 63/150 (42.00%), Query Frame = 1
Query:   70 LKTAWHHCSAVARYRSRFPGVFSL---------CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMA-----------------GYCHDNLDDEA--SFLSRVVRTRAPTAAIGLQCSELSFDG----RAVKAGRPWWR 423
            L   WH C        + P   S+         C  P     Y   V LL     QIRAQFAA GAPLVGD  YMP A                  Y  D++   A   +++R    + P  AIGLQ  ++S+D      + +AGRPWWR
Sbjct:  336 LVNGWHLCQLEVLECRKIPWPSSIAEEKNRVEDCGWPSKDFAYECKVNLLTGRTHQIRAQFAACGAPLVGDSMYMPAAIAEVDRPELNPFGKNKKEYASDDIKAVAVEEWIAR--HGKEPIVAIGLQACKISWDSDEEQHSYEAGRPWWR 483          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: UPI00098DFE0E (RNA pseudouridine synthase 6, chloroplastic isoform X1 n=3 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DFE0E)

HSP 1 Score: 60.1 bits (144), Expect = 5.710e-7
Identity = 42/113 (37.17%), Postives = 55/113 (48.67%), Query Frame = 1
Query:  142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMAGYCHDNL---------------DDEASFLSRVVRT--RAPTAAIGLQCSELSFDGRAV--KAGRPWWR 423
            C  PL +  Y   + L+     QIRAQFAA GAP+VGD  Y P A    +N                +D+   +   V    + P  AIGLQ S++S+DG  V  +AG PWWR
Sbjct:  375 CGWPLKTSAYECRINLITGKTHQIRAQFAAIGAPIVGDSIYTPAAMAQIENPHINPVGASKREYTSEEDKEKAIEEWVSCHGKEPNTAIGLQASQISWDGGKVCYEAGTPWWR 487          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A803M203_CHEQI (PseudoU_synth_2 domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M203_CHEQI)

HSP 1 Score: 59.7 bits (143), Expect = 7.560e-7
Identity = 40/113 (35.40%), Postives = 54/113 (47.79%), Query Frame = 1
Query:  142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMA------------GYCHDNL--DDEASFLSR---VVRTRAPTAAIGLQCSELSFDG--RAVKAGRPWWR 423
            C  P+ +  Y   V LL     QIRAQFAA GAP++GD  YMP +            G C +    +DE +        +  + PT AIGL+  ++S+D       AG PWWR
Sbjct:  365 CGWPVENLAYECTVDLLTGRTHQIRAQFAACGAPIIGDSMYMPASLAEKATPNINPLGKCKEEYTSEDEKNIAIDNWIALHGKEPTVAIGLRACQISWDSGEHIYNAGSPWWR 477          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A7G2RM09_BETVV (PseudoU_synth_2 domain-containing protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A7G2RM09_BETVV)

HSP 1 Score: 59.3 bits (142), Expect = 1.020e-6
Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 1
Query:  142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMPMAGY---------------CHDNLDDEASFLSRVVRT--RAPTAAIGLQCSELSFDG--RAVKAGRPWWR 423
            C+ P+ +  Y   V LL     QIRAQFAA GAP+VGD  Y+P +                  + + D++   +   V    + PT +IGLQ  ++S+D      KAG PWWR
Sbjct:  366 CEWPVKNTAYECTVNLLTGRTHQIRAQFAACGAPIVGDSMYLPASVAEIVTPEVNPYGKYKGVYSSEDEKRIAIDNWVALHGKEPTVSIGLQACQISWDNGEHMYKAGSPWWR 478          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A7J7C4A2_TRIWF (PseudoU_synth_2 domain-containing protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C4A2_TRIWF)

HSP 1 Score: 57.0 bits (136), Expect = 6.140e-6
Identity = 48/150 (32.00%), Postives = 65/150 (43.33%), Query Frame = 1
Query:   55 NEQSILKTAWHHCS--AVARYRSRFPGVF-------SLCQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMP--MAGYCHDNLDDEASFLSRVVRT---------------RAPTAAIGLQCSELSFDG--RAVKAGRPWW 420
            +E+SI+   WH C    +   +  +P VF         C  PL    Y   + LL     QIRAQFAA+GAPLVGD  YMP  +A      L+   +F+                     + P  AIGLQ  ++S+D      +A  PWW
Sbjct:  325 SEESIV--GWHLCQLEVMGCKKIPWPNVFIEQKYCVENCGWPLKDYAYECKINLLTGRTHQIRAQFAASGAPLVGDSMYMPAAVAEMASPGLNPYGTFMKEYTNDDHKTIAVEEWIAQHGKEPNNAIGLQACQISWDDGEHNYEARSPWW 472          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A4V4H9B0_MUSBA (PseudoU_synth_2 domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4V4H9B0_MUSBA)

HSP 1 Score: 57.0 bits (136), Expect = 6.190e-6
Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMP--MAGYCHDNL-------------DDEASFLSRVVRT--RAPTAAIGLQCSELSFDGR--AVKAGRPWWR 423
            C  P     Y   + LL     QIRAQFAA GAP+VGD  Y+P  MA   + ++             D++ + + + +    + P AAIGLQ S +S+D    + +AG PWWR
Sbjct:  370 CGWPFKKVAYECKINLLTGKTHQIRAQFAAIGAPIVGDSMYIPSVMAKMANPSINPFDRKWKEYASEDEKMAAIEQWIAQHGKEPNAAIGLQASHISWDDGTCSYEAGAPWWR 482          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: UPI001929B579 (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929B579)

HSP 1 Score: 56.6 bits (135), Expect = 8.330e-6
Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  142 CQTPLSSKLYSRCVFLLRLHCWQIRAQFAAAGAPLVGDWSYMP-------------MAGYCHD--NLDDEASFLSRVVRT--RAPTAAIGLQCSELSFDGR--AVKAGRPWWRGGLA 435
            C  P  S  Y   + LL     Q+RAQ AA GAPL+GD  YMP                Y  +  + +D+ + +   +    + P+AAIGLQ S++S+D    + +AG PWWR G+A
Sbjct:  367 CGWPSWSVAYECKINLLTGKTHQVRAQLAAIGAPLIGDSMYMPAVISEKANPLINPFGEYRKEYTSHEDKMAAVEEWISQYGKEPSAAIGLQASQISWDNGECSYEAGAPWWRHGIA 483          
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Match: A0A7I4DQ79_PHYPA (PseudoU_synth_2 domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DQ79_PHYPA)

HSP 1 Score: 56.2 bits (134), Expect = 9.760e-6
Identity = 36/90 (40.00%), Postives = 44/90 (48.89%), Query Frame = 1
Query:  208 QIRAQFAAAGAPLVGDWSYMPMAGY-----------CHDNLDDEASFLSRVVRTR-----APTAAIGLQCSELSFDG--RAVKAGRPWWR 423
            QIR QFAA  APLVGD  YMP                   + DE S+ S +   R      P   +GLQ S +S++G  +  KAGRPWWR
Sbjct:  278 QIRVQFAALDAPLVGDSVYMPSVVARKKSPEVDPFRAESMIQDEGSWNSAIENWRDLHGLEPVCGLGLQASVISWEGEKQVFKAGRPWWR 367          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7434.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSL0_9STRA8.080e-1758.11Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A0G4EST6_VITBC3.480e-936.07PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A022R0Z8_ERYGU4.170e-733.33PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
UPI00098DFE0E5.710e-737.17RNA pseudouridine synthase 6, chloroplastic isofor... [more]
A0A803M203_CHEQI7.560e-735.40PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7G2RM09_BETVV1.020e-634.51PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7J7C4A2_TRIWF6.140e-632.00PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A4V4H9B0_MUSBA6.190e-635.40PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
UPI001929B5798.330e-635.04RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
A0A7I4DQ79_PHYPA9.760e-640.00PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7434contigP-wetherbeei_contig7434:2175..3087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size673
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186981.2719953-UTR-P-wetherbeei_contig7434:2174..24091683186981.2719953-UTR-P-wetherbeei_contig7434:2174..2409Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7434 2175..2409 -
1683186981.2985542-UTR-P-wetherbeei_contig7434:2823..30871683186981.2985542-UTR-P-wetherbeei_contig7434:2823..3087Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7434 2824..3087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186981.2819526-CDS-P-wetherbeei_contig7434:2409..25491683186981.2819526-CDS-P-wetherbeei_contig7434:2409..2549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7434 2410..2549 -
1683186981.290388-CDS-P-wetherbeei_contig7434:2789..28231683186981.290388-CDS-P-wetherbeei_contig7434:2789..2823Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7434 2790..2823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7434.2.1prot_P-wetherbeei_contig7434.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7434 2410..2823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7434.2.1

>prot_P-wetherbeei_contig7434.2.1 ID=prot_P-wetherbeei_contig7434.2.1|Name=mRNA_P-wetherbeei_contig7434.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MPMAGYCHDNLDDEASFLSRVVRTRAPTAAIGLQCSELSFDGRAVKAGRP
WWRGGLA*
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mRNA from alignment at P-wetherbeei_contig7434:2175..3087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7434.2.1 ID=mRNA_P-wetherbeei_contig7434.2.1|Name=mRNA_P-wetherbeei_contig7434.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=913bp|location=Sequence derived from alignment at P-wetherbeei_contig7434:2175..3087- (Phaeothamnion wetherbeei SAG_119_79)
ATACTTTACGAGTCCGTGGTTCAGTTGCACACGGGAAGGACACATCATGT GAGGAATGAACAGTCTATTCTAAAAACGGCTTGGCACCATTGTTCTGCTG TTGCACGCTATCGTAGTCGATTCCCAGGAGTTTTCTCTCTTTGTCAGACG CCTCTGTCCTCAAAGCTATACTCGCGCTGTGTTTTCCTTCTCCGTCTGCA CTGCTGGCAGATCCGTGCGCAGTTTGCAGCGGCGGGTGCGCCGTTGGTGG GCGACTGGAGCTACATGCCCATGGCAGGCTATTGTCACGACAACCTTGGT AAGTGGGCACCGCCAGCAGGAGGCAGGATCAGGTGGTCGGTACGGTAGCG CAGCTGGTAGAACTGAGGCGTATCTCGCTCTTCAGGGAGCATCGGTGTCG TCTTGGGTGTTTTTGTTCTTGTTTTTCTATTGGACCTAACCAGTCCTAGT TGCAGCACCGCCACACAATACTGGCACGTCCTCTTGTTTCTGCTCACTGC ACTGCGTGTTCCCCCGACTCCCATCTCTTTCCGCCCAGATGACGAAGCGT CCTTCCTGTCGCGTGTTGTGCGCACCCGCGCCCCCACGGCGGCCATTGGG CTGCAGTGCTCCGAGCTGTCCTTCGACGGGCGCGCCGTGAAAGCCGGCCG GCCGTGGTGGCGGGGCGGGCTTGCGTGAAGGCGGGGGCTGAGGATAAAAA AGACAATTGCTGCTGCTGTTGGTTTGAGGGAGTGTTGGCGACGGAAAAAT GAATACACGTGCCCAGTGAGGTTCATCGGACGAGTATATTCGCGCGGTTG CTGGGGAAATGAAGGAGGAAGGTAATGGGGTAATTTCGCACGAAATGACT GTGCGAAGGACAAAACACCGCAGAGGGCATATAGATTAAATAACCAACAT ATTACCACACCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7434:2175..3087-

>mRNA_P-wetherbeei_contig7434.2.1 ID=mRNA_P-wetherbeei_contig7434.2.1|Name=mRNA_P-wetherbeei_contig7434.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig7434:2175..3087- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCATGGCAGGCTATTGTCACGACAACCTTGATGACGAAGCGTCCTT
CCTGTCGCGTGTTGTGCGCACCCGCGCCCCCACGGCGGCCATTGGGCTGC
AGTGCTCCGAGCTGTCCTTCGACGGGCGCGCCGTGAAAGCCGGCCGGCCG
TGGTGGCGGGGCGGGCTTGCGTGA
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