mRNA_P-wetherbeei_contig742.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig742.2.1
Unique NamemRNA_P-wetherbeei_contig742.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A835YV31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV31_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.930e-41
Identity = 98/244 (40.16%), Postives = 126/244 (51.64%), Query Frame = 1
Query:    1 PGVEAFTAVLAGYAERGDKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQRGLTDASLXXXXXXXXXXXTGLCQATPAE-------------------------------GVHEALQLLLTMRRKGVAXXXXXXXXXXXXXXXAAPPRMKEAEAVVGLMRAWGLVPSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRTCADVAAVNCLLDACAKNGDMKRAVELLE 639
            P V AFTAVL+G+A+ GD ARA+ + + M  +GV  NLVTYTAL+ ACV  G + +ARRL   L  +G  D +L            GLC+    E                               G+ EAL+LLL M+  GVA                 PPRM EAEA+  LM   GL+P+ V+YS +IKGYGR G+L AA  AF A+L D R C DV A+N  LDAC + GD+  A+  L+
Sbjct:  335 PSVHAFTAVLSGFADAGDMARALTVLELMERSGVTANLVTYTALLGACVKAGALPEARRLFEGLRAKGQRDPALRPNTITYNTLIVGLCRLAEREEADMRQEWGGEGGVQDRADRDIMAPVCALPSGIQEALKLLLDMKHNGVAASETTINSILDGVVSLTPPRMAEAEAIRQLMTQLGLIPNSVTYSIMIKGYGRVGNLEAARAAFGALLRDPRACPDVVALNSYLDACVRCGDLPAALSTLD 578          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.800e-26
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  283 EGVHEALQLLLTMRRKGVAXXXXXXXXXXXXXXXAAPPRMKEAEAVVGLMRAWGLVPSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRTCADVAAVNCLLDACAKNGDMKRAVELLEEVCA 651
            EG+ EAL++LL+MRR+GV                 +PPR++EAE ++ LM  WGL P++VS++ ++KGYGR GDL AAE  F  M AD     DV A+N +LDAC +NGD++RAVE+LE+  A
Sbjct:  581 EGIQEALRVLLSMRRRGVPADEVTMNSIIDGLVSCSPPRVREAETLLKLMTGWGLKPNQVSFTVMLKGYGRIGDLGAAELMFEVMAADRDQRPDVVALNSILDACVRNGDLRRAVEILEQASA 703          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 7.280e-26
Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = 1
Query:  274 TPAEGVHEALQLLLTMRRKGVAXXXXXXXXXXXXXXXAAPPRMKEAEAVVGLMRAWGLVPSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRTCADVAAVNCLLDACAKNGDMKRAVELLEEVCA 651
            T  EG+ EAL++LL+MRR+GV                 +PPR++EAE ++ LM  WGL P++VS++ ++KGYGR GDL AAE  F  M AD     DV A+N +LDAC +NGD++RAVE+LE+  A
Sbjct: 1046 TIPEGIQEALRVLLSMRRRGVPADEVTMNSIIDGLVSCSPPRVQEAETLLKLMTGWGLKPNQVSFTVMLKGYGRIGDLGAAELMFEVMAADRDQRPDVVALNSILDACVRNGDLRRAVEILEQASA 1171          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A836CQL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQL2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.640e-21
Identity = 76/226 (33.63%), Postives = 97/226 (42.92%), Query Frame = 1
Query:    1 PGVEAFTAVLAGYAERGDKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQRGLTDASLXXXXXXXXXXXTGLCQ-------------------------------------ATPA----EGVHEALQLLLTMRRKGVAXXXXXXXXXXXXXXXAAPPRMKEAEAVVGLMRAWGLVPSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRT 555
            P VEA+TAVL G+A+ GD+  A+A+FQ M  AGV  NLVT                      AL+ +G    +L            GLCQ                                     + PA     G+ EAL+LLL MRRKGV                 +PPRM EAEA+  LM  WGL P+ V+YS LIKG+ R G+L +A  AF  ++A   T
Sbjct:  419 PSVEAYTAVLTGFADAGDRQGALAVFQEMSAAGVEANLVTXXXXXXXXXXXXXXXXXXXXXXALQAKGRRTPALKPNTITYNTLIAGLCQGGGGAAAGGLAQRRGAGRSRTESHRGGAQRLAVAQPPSAPAFPLPAGIQEALKLLLDMRRKGVPPSEATVNAILDGMVSLSPPRMAEAEALRSLMTGWGLAPNSVTYSILIKGHRRCGNLESARAAFEELIAGAAT 644          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A7S4D9C7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9C7_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 4.550e-14
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 PGVEAFTAVLAGYAERGDKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQRGLTD--ASLXXXXXXXXXXXTGLCQATPAE-GVHEA 300
            PGVEA+TA+L GYA RG +A A+A+ + M E GV PN VT TAL++ACV  GD+D AR L+A LE R   D   +            TGLC+    E G+ EA
Sbjct:   10 PGVEAYTALLNGYARRGRQAEALAVLRLMLERGVAPNAVTLTALVSACVRGGDLDAARGLVAFLEARRGRDPQGAPLLSAATYNALLTGLCRGDAGEAGLGEA 112          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A162AFY2_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AFY2_DAUCS)

HSP 1 Score: 64.3 bits (155), Expect = 3.100e-8
Identity = 60/220 (27.27%), Postives = 97/220 (44.09%), Query Frame = 1
Query:    1 PGVEAFTAVLAGYAERG---DKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQRGLTDASLXXXXXXXXXXXTGLCQATPAEGVHEALQLLLTMRRKGVAXXXXXXXXXXXXXXXAAPPRMKEAEAVVGLMRAWGLVPSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRTCADVAAVNCLLDACAKNG---DMKRAVELLEE 642
            P    +T ++ GY ++G   D  R +   ++  ++G  P+ VTYT +I+A V  G +D AR++LA + + G+    +            G C+    E   EA +L+  M                             A      MRA G+ PS+VSY+TL+K +  +G    A + F  ML D R   D+ A N L++   + G   + KR VE ++E
Sbjct:  367 PDSRIYTTLMKGYMKQGRVLDTMRMLEAMRQQEDSGSHPDHVTYTTVISAFVKVGAMDRARQVLAEMSRIGVPANRITYNILLK-----GYCEQLQIE---EAKELIRVMADGDAGLEPDVVSYNTLIDGCILIDDGAGALTYFNEMRARGIAPSKVSYTTLMKAFALSGQPKLANKVFDEMLNDPRVKVDLVAWNMLVEGDCRLGLLEEAKRIVERMKE 578          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A2N9IKV4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKV4_FAGSY)

HSP 1 Score: 62.0 bits (149), Expect = 1.880e-7
Identity = 57/218 (26.15%), Postives = 96/218 (44.04%), Query Frame = 1
Query:    1 PGVEAFTAVLAGYAERG---DKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQRGLTDASLXXXXXXXXXXXTGLCQATPAEGVHEALQLLLTMRRKGVAXXXXXXXXXXXXXXXAAPPRMKEAEAVVGLMRAWGLVPSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRTCADVAAVNCLLDACAKNGDMKRAVELLEEV 645
            P    +T ++ GY   G   D  R +   +R  ++   P+ VTYT +++A V  G +D AR++LA + + G+    +            G CQ      + EA +LL  M                             A A    MRA G+ P+++SY+TL+K +  +G    A + F  ML D R  AD+ A N L+D   + G ++ A  +++++
Sbjct:  383 PNSRVYTTLMKGYMMAGRVTDTVRMLEAMRRQDDSASHPDHVTYTTVVSALVKAGLMDRARQVLAEMTRIGVPANRITYNILLK-----GYCQQLQ---IDEAKELLREMADDAEIEPDVVSYNILIDGCILVDDSAG-ALAFFNEMRARGIPPTKISYTTLMKAFALSGQPKLANKVFDEMLNDPRVKADLIAWNMLIDGYCRLGLIEEAKNIVQKM 591          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A2P6PCI4_ROSCH (Putative tetratricopeptide-like helical domain-containing protein n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PCI4_ROSCH)

HSP 1 Score: 61.6 bits (148), Expect = 2.080e-7
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    7 VEAFTAVLAGYAERGDKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQRGL 207
            V A+TA++ G A+ G    A+ LF+ M +AGVRPN +T+T +++ACVN G VD+ R+    +E+ GL
Sbjct:  260 VMAWTALICGSAQHGYSKEALCLFETMHKAGVRPNELTFTGVLSACVNTGLVDEGRKYFNLIEESGL 326          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A059A6G9_EUCGR (Uncharacterized protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059A6G9_EUCGR)

HSP 1 Score: 60.8 bits (146), Expect = 4.410e-7
Identity = 53/221 (23.98%), Postives = 99/221 (44.80%), Query Frame = 1
Query:    1 PGVEAFTAVLAGYAERG---DKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQRGLTDASLXXXXXXXXXXXTGLCQATPAEGVHEALQLLLT---MRRKGVAXXXXXXXXXXXXXXXAAPPRMKEAEAVVGLMRAWGLVPSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRTCADVAAVNCLLDACAKNGDMKRAVELLEEV 645
            P    +T ++ GY   G   D  R +   +   ++   P+ ++YT +I+A V  G +D ARR+LA +++      S+            G CQ    +   E ++ +++   ++   V+                A     E       MRA G+ P+++SY+TL+K +  +G    A + F  M+ D R   DVAA N L++   K G ++ A ++++ +
Sbjct:  290 PNSRIYTTLMKGYMRMGRVKDTVRLLEAMRHEEDSSRHPDHISYTTVISALVKAGSMDQARRVLAEMKR-----ISVPANRITYNILLKGYCQQLQMDKAKELIKEMVSDAQVQPDVVSYNTLIDGCIIIDDSSGALEFFNE-------MRARGIAPTKISYTTLMKAFASSGQPKLAHKVFDEMIQDPRVKPDVAAWNMLVEGYCKLGLVEEAKKVVQRM 498          
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Match: A0A6N2M4F8_SALVM (Auxin response factor n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2M4F8_SALVM)

HSP 1 Score: 60.8 bits (146), Expect = 5.270e-7
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 PGVEAFTAVLAGYAERGDKARAVALFQRMGEAGVRPNLVTYTALITACVNCGDVDDARRLLAALEQR 201
            P   A+TA++AGYA +G+   A+ LF+RM + GVRPN VT+ A++TAC + G V + R+ L ++  +
Sbjct: 1259 PDAVAWTAIIAGYAYQGNAPEALELFRRMQDCGVRPNAVTFIAVLTACSHSGLVKEGRQYLESMNSK 1325          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig742.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YV31_9STRA2.930e-4140.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LBV9_ECTSI6.800e-2647.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7F1_9PHAE7.280e-2647.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CQL2_9STRA1.640e-2133.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D9C7_HETAK4.550e-1447.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A162AFY2_DAUCS3.100e-827.27Uncharacterized protein n=2 Tax=Daucus carota subs... [more]
A0A2N9IKV4_FAGSY1.880e-726.15Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2P6PCI4_ROSCH2.080e-744.78Putative tetratricopeptide-like helical domain-con... [more]
A0A059A6G9_EUCGR4.410e-723.98Uncharacterized protein n=2 Tax=Eucalyptus grandis... [more]
A0A6N2M4F8_SALVM5.270e-743.28Auxin response factor n=1 Tax=Salix viminalis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig742contigP-wetherbeei_contig742:2802..3899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBV9
PFAMsPPR
Model size714
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.11e-26
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size714
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186980.2818737-CDS-P-wetherbeei_contig742:2801..32301683186980.2818737-CDS-P-wetherbeei_contig742:2801..3230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig742 2802..3230 -
1683186980.2920005-CDS-P-wetherbeei_contig742:3614..38991683186980.2920005-CDS-P-wetherbeei_contig742:3614..3899Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig742 3615..3899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig742.2.1prot_P-wetherbeei_contig742.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig742 2802..3899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig742.2.1

>prot_P-wetherbeei_contig742.2.1 ID=prot_P-wetherbeei_contig742.2.1|Name=mRNA_P-wetherbeei_contig742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
PGVEAFTAVLAGYAERGDKARAVALFQRMGEAGVRPNLVTYTALITACVN
CGDVDDARRLLAALEQRGLTDASLAPTVVTYNSLITGLCQATPAEGVHEA
LQLLLTMRRKGVAPNEVTMNAILDGLVSAAPPRMKEAEAVVGLMRAWGLV
PSEVSYSTLIKGYGRAGDLPAAERAFAAMLADMRTCADVAAVNCLLDACA
KNGDMKRAVELLEEVCAAASARRRHSGGVGGSGGGGGG
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mRNA from alignment at P-wetherbeei_contig742:2802..3899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig742.2.1 ID=mRNA_P-wetherbeei_contig742.2.1|Name=mRNA_P-wetherbeei_contig742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1098bp|location=Sequence derived from alignment at P-wetherbeei_contig742:2802..3899- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGCGTGGAGGCCTTCACCGCCGTCCTGGCGGGCTACGCCGAGCGCGG CGACAAGGCCCGCGCCGTCGCCCTTTTCCAGCGCATGGGCGAGGCTGGCG TGCGGCCCAACCTCGTCACCTACACGGCGCTTATCACGGCGTGCGTCAAT TGCGGGGATGTGGATGATGCACGGCGGCTGCTAGCGGCACTGGAGCAGCG GGGGCTGACGGACGCGTCGCTGGCGCCGACCGTGGTGACATACAATTCGC TCATCACGGGGCTCTGCCAGGCGACGCCGGCGGAGGTTGCGGCGGCAACG TCAGCGGAGGAGGCAACAGAAGCAGTGACGGCGGCGGCGACGATGGCAGC GACGGCGGCGTCCGTGGCTGTGGCGGCCCCGGAAGCTGTTGGGACAGAGG AGGCGGCAGCCGTCCCAGAGCCTTCTTCGGCACTTGCGGCAGCGGCGACA GCGGCAGCAGCGGCGGCAGCAGCGGCGGCAGCTGTGGCGGCAGCAGCAGC GGCAGCGACAACATCTGCAGCAGCGGCAGCGACAACATCTGCAGCAGCGG CTGGGATAGCAGTGGCAAATGTACAAACCCCAGTCGGTGCAGCAGGCGCC AACGCCGCCGCCGCTTCGGCCGCCAGCGGCGTCTTCGCCGTCTCCGGCGC CGGCGGCAGCCTGCCTGAGGGCGTCCATGAGGCGCTCCAGCTGCTGCTGA CGATGCGCCGCAAGGGCGTCGCCCCTAACGAGGTGACCATGAACGCCATT TTGGACGGCCTCGTCTCCGCCGCTCCGCCGCGCATGAAAGAAGCGGAAGC CGTCGTCGGTCTGATGCGCGCCTGGGGCCTGGTCCCGTCCGAGGTCTCCT ACTCGACTTTGATAAAAGGGTACGGGCGCGCGGGGGACCTGCCGGCTGCC GAGCGGGCCTTCGCGGCCATGCTGGCGGACATGCGGACGTGCGCGGACGT AGCGGCCGTCAACTGCCTGCTGGACGCGTGCGCCAAGAACGGCGACATGA AGCGCGCCGTGGAGCTGCTCGAGGAGGTCTGCGCCGCCGCGTCGGCCCGC CGCCGCCACTCCGGAGGCGTTGGCGGAAGTGGCGGCGGCGGTGGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig742:2802..3899-

>mRNA_P-wetherbeei_contig742.2.1 ID=mRNA_P-wetherbeei_contig742.2.1|Name=mRNA_P-wetherbeei_contig742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig742:2802..3899- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGCGTGGAGGCCTTCACCGCCGTCCTGGCGGGCTACGCCGAGCGCGG
CGACAAGGCCCGCGCCGTCGCCCTTTTCCAGCGCATGGGCGAGGCTGGCG
TGCGGCCCAACCTCGTCACCTACACGGCGCTTATCACGGCGTGCGTCAAT
TGCGGGGATGTGGATGATGCACGGCGGCTGCTAGCGGCACTGGAGCAGCG
GGGGCTGACGGACGCGTCGCTGGCGCCGACCGTGGTGACATACAATTCGC
TCATCACGGGGCTCTGCCAGGCGACGCCGGCGGAGGGCGTCCATGAGGCG
CTCCAGCTGCTGCTGACGATGCGCCGCAAGGGCGTCGCCCCTAACGAGGT
GACCATGAACGCCATTTTGGACGGCCTCGTCTCCGCCGCTCCGCCGCGCA
TGAAAGAAGCGGAAGCCGTCGTCGGTCTGATGCGCGCCTGGGGCCTGGTC
CCGTCCGAGGTCTCCTACTCGACTTTGATAAAAGGGTACGGGCGCGCGGG
GGACCTGCCGGCTGCCGAGCGGGCCTTCGCGGCCATGCTGGCGGACATGC
GGACGTGCGCGGACGTAGCGGCCGTCAACTGCCTGCTGGACGCGTGCGCC
AAGAACGGCGACATGAAGCGCGCCGTGGAGCTGCTCGAGGAGGTCTGCGC
CGCCGCGTCGGCCCGCCGCCGCCACTCCGGAGGCGTTGGCGGAAGTGGCG
GCGGCGGTGGCGGT
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