mRNA_P-wetherbeei_contig7415.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7415.2.1
Unique NamemRNA_P-wetherbeei_contig7415.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: D8LN02_ECTSI (Dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN02_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 7.210e-65
Identity = 112/178 (62.92%), Postives = 138/178 (77.53%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALLQ--LGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            LKE+CV+FGM  PR  G+  IE D+ AT + WALYK+YS+EL A+A QDWI FR N ++LQDLA++W + +KA+LAE      VTE IH + E++++A P LKYCRG+ FKEEHWSALLQ  LGL R VRLENL V HFLSA+ +L DP L+Q+VK L +RAQGEVTIREALQELVAW
Sbjct:  494 LKENCVSFGMPAPRLEGVDAIEEDLTATESSWALYKEYSSELKALADQDWISFRPNVFALQDLATKWIEVIKARLAEAQRADTVTEHIHQELERMRKATPTLKYCRGEPFKEEHWSALLQGKLGLDRSVRLENLMVSHFLSAMDRLADPALLQFVKHLQSRAQGEVTIREALQELVAW 671
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A836CKQ4_9STRA (Dynein heavy chain, N-terminal region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ4_9STRA)

HSP 1 Score: 213 bits (543), Expect = 7.710e-61
Identity = 109/181 (60.22%), Postives = 136/181 (75.14%), Query Frame = 1 
Query:    1 ELKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALLQ--LGLKREVRLENLTVGHFLS--ALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            +L E+C +FGM  PRF G+A I +DI  TA+ W+L KDYS E+  +  QDWI FR N Y+LQD A+ W ++V+A++AE     AVTER+  + EK+KR MP LK+CRG+ FKEEHW ALLQ  LGL R VRLENLT+GHF++  AL +L D +LVQ+VK L ARAQGEVTIREALQELVAW
Sbjct:   48 QLSENCQSFGMPSPRFEGMAVIAADIEGTASSWSLLKDYSTEVKTLTDQDWISFRANVYALQDFATAWGEKVRARMAEAQRSDAVTERLLQELEKIKRVMPCLKHCRGEPFKEEHWGALLQGKLGLDRSVRLENLTLGHFITGPALDKLADASLVQFVKHLQARAQGEVTIREALQELVAW 228
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A8J2SHJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHJ0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.470e-48
Identity = 93/180 (51.67%), Postives = 125/180 (69.44%), Query Frame = 1 
Query:    1 ELKEHCVAFGM-APPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALLQ--LGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            EL EH V+F M  PPRF G++ IE +I  ++  W+L +DY +EL  +  QDWI FR N + L DLA  WSD+VK ++  G    AV   +  Q E++K A   LKYC G  FK+EHWSALLQ  LGL +E+RLE+LTVGHF++AL ++++P L+ +VKEL A+AQGEV +R+ALQEL  W
Sbjct: 1111 ELVEHFVSFNMPVPPRFDGLSVIELEITMSSTSWSLLRDYLSELDLLEKQDWISFRGNMHLLHDLAMSWSDKVKERIVAGQA-DAVMLHLSSQLERIKAAATTLKYCHGKDFKDEHWSALLQGKLGLGKEIRLESLTVGHFVAALDKVLEPALLVFVKELQAQAQGEVLVRDALQELSVW 1289
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A6H5L423_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L423_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.550e-46
Identity = 95/189 (50.26%), Postives = 117/189 (61.90%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALLQLGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEV-------------TIREALQELVAW 531
            LKE+CV+FGM  PR   +  IE D+AAT + WALYK+YS+EL A+A QDWI FR N ++LQDLA++W + +KA+LAE      VTE IH                   AF    W  + +LGL R VRLENL V HFLSA+ +L DP L+Q+VK L +RAQGEV             TIREALQELVAW
Sbjct:  246 LKENCVSFGMPAPRLESVDAIEEDLAATESSWALYKEYSSELKALADQDWISFRPNVFALQDLATKWIEVIKARLAEAQRADTVTEHIHQA---------GCHSATHSAFFITRWMRVGKLGLDRSVRLENLMVSHFLSAMDRLADPALLQFVKHLQSRAQGEVGTAVIAPLWSNKVTIREALQELVAW 425
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A1V9ZJN7_9STRA (Dynein heavy chain n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJN7_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.690e-45
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALLQ-LGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            L  +C  F M  P F G+A +E D+    A W L+KDY AEL A+AAQDWI FR   + L DLA++WS+ +K         +AV ERI D    VKRAMPALK CRGD FKEEHW+ L + L L + V L  LT+GHFL+AL  L     +Q+VK L ARAQGEVTIR+ALQEL AW
Sbjct: 1087 LAANCATFQMTVPPFDGLAALEVDMGTVEATWRLHKDYHAELDALAAQDWITFRDKMFDLADLAAKWSEALKTSAR-----SAVVERILDHCGHVKRAMPALKLCRGDPFKEEHWTQLFRKLNLPKGVGLMQLTLGHFLAALDVLESAATLQFVKVLHARAQGEVTIRDALQELKAW 1258
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A485LI71_9STRA (Aste57867_21689 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI71_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.280e-45
Identity = 89/177 (50.28%), Postives = 117/177 (66.10%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALL-QLGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            L ++C  F MA P+F G+A +++DI      W++YKDY+ E+ A+A QDWI FR   + L D+A++W++++KA        T V +RI D    +KRAMP LK CRGD FKEEHWS L  +LG+ + V L  LTVGHFL  L  L     +Q+VK L ARAQGEVTIR+ALQEL AW
Sbjct: 1105 LVDNCTTFQMAIPQFDGVAALDADIHRVELNWSMYKDYNGEVEALAKQDWITFREKMFDLADVAAKWAEKLKAM-----DHTGVVDRILDHCGHIKRAMPTLKLCRGDPFKEEHWSQLFHKLGIPKGVSLVQLTVGHFLGCLDALEAQATLQFVKVLHARAQGEVTIRDALQELRAW 1276
[Close]
BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A2D4BHB6_PYTIN (Dynein heavy chain (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHB6_PYTIN)

HSP 1 Score: 167 bits (423), Expect = 1.020e-44
Identity = 91/177 (51.41%), Postives = 117/177 (66.10%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALLQ-LGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            L  +C AF M  P F G+A + SD+   A  WA Y+ +  ++ A+AAQ WI F  N ++LQD A++W +RVKA LA     T+V ++I D   +VKRAMP LK CRG+ FK++HW+ L + LGL R V   NLT+GHFL  L  L  P  +Q+VK L ARAQGEVTIREALQEL AW
Sbjct:  902 LVANCAAFQMPEPAFDGLAALASDVDKIAQNWATYRSFRDDVRALAAQXWITFSANAFALQDCATQWVERVKAALAGER--TSVVDKIQDFATRVKRAMPTLKLCRGEPFKDDHWTQLFRKLGLPRGVEKRNLTLGHFLDVLEVLEVPATLQFVKVLHARAQGEVTIREALQELRAW 1076
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A6A5A240_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A240_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.680e-44
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALL-QLGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            L ++C  F M  P+F G+  +ESDIA     W++YK+Y+AE+  +A QDWI FR   + L D+A++WSD++K         T V +RI D    +KRAMP LK CRGD FKEEHW+ L  +LG+ + V L  LTVGHFL  L  L     +Q+VK L ARAQGEVTIR+ALQEL AW
Sbjct: 1109 LVDNCTTFQMTLPQFDGVPALESDIARVELNWSMYKEYNAEVEVIAQQDWITFREKIFDLADVATKWSDKLKPL-----DHTGVVDRILDHCGHIKRAMPTLKMCRGDPFKEEHWTQLFHKLGVAKGVSLVQLTVGHFLQCLDVLEAQATLQFVKVLHARAQGEVTIRDALQELRAW 1280
[Close]
BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: A0A3L6V0K6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V0K6_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.720e-44
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALL-QLGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            L ++C  F M  P+F G+  +ESDIA     W++YK+Y+AE+  +A QDWI FR   + L D+A++WSD++K         T V +RI D    +KRAMP LK CRGD FKEEHW+ L  +LG+ + V L  LTVGHFL  L  L     +Q+VK L ARAQGEVTIR+ALQEL AW
Sbjct:  852 LVDNCTTFQMTLPQFDGVPALESDIARVELNWSMYKEYNAEVEVIAQQDWITFREKIFDLADVATKWSDKLKPL-----DHTGVVDRILDHCGHIKRAMPTLKMCRGDPFKEEHWTQLFHKLGVAKGVSLVQLTVGHFLQCLDVLEAQATLQFVKVLHARAQGEVTIRDALQELRAW 1023
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BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Match: H3HBY2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBY2_PHYRM)

HSP 1 Score: 166 bits (419), Expect = 3.710e-44
Identity = 84/177 (47.46%), Postives = 110/177 (62.15%), Query Frame = 1 
Query:    4 LKEHCVAFGMAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYSLQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDAFKEEHWSALLQ-LGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAARAQGEVTIREALQELVAW 531
            L  +C AF M  P F G+  +E D+      W  Y+ +  E+ A+AAQDW  F  N ++L D A +W+D VK + A G   TAV ++I+D    VKRAMP LK CRG+ FK++HW+ L + LG  R V  +NL V HF+   P L  P  +Q+VK L ARAQGEVTIR+ALQEL AW
Sbjct: 1159 LTSNCAAFSMTEPAFDGLPALEDDVGKLQRNWQTYRQFREEVQALAAQDWFAFCTNMFALADTAQKWADAVKEQAAHGVERTAVVDKINDFNTNVKRAMPTLKLCRGEPFKDDHWTQLFRKLGFPRGVEKQNLIVQHFMDVFPVLELPATLQFVKVLHARAQGEVTIRDALQELRAW 1335
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7415.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN02_ECTSI7.210e-6562.92Dynein heavy chain dynein heavy chain n=1 Tax=Ecto... [more]
A0A836CKQ4_9STRA7.710e-6160.22Dynein heavy chain, N-terminal region 2-domain-con... [more]
A0A8J2SHJ0_9STRA3.470e-4851.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5L423_9PHAE6.550e-4650.26DHC_N2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1V9ZJN7_9STRA1.690e-4553.67Dynein heavy chain n=1 Tax=Achlya hypogyna TaxID=1... [more]
A0A485LI71_9STRA4.280e-4550.28Aste57867_21689 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4BHB6_PYTIN1.020e-4451.41Dynein heavy chain (Fragment) n=1 Tax=Pythium insi... [more]
A0A6A5A240_9STRA2.680e-4450.28Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3L6V0K6_9STRA2.720e-4450.28Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
H3HBY2_PHYRM3.710e-4447.46Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7415contigP-wetherbeei_contig7415:1724..2854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN02
Preferred nameDYNC2H1
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size531
Max annot lvl2759|Eukaryota
KEGG koko:K05636,ko:K10414
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04962,ko05132,ko05145,ko05146,ko05165,ko05200,ko05222,map04145,map04151,map04510,map04512,map04962,map05132,map05145,map05146,map05165,map05200,map05222
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001568,GO:0001578,GO:0001944,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005858,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0005930,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008049,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008569,GO:0008589,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010256,GO:0010467,GO:0010646,GO:0010647,GO:0010648,GO:0010970,GO:0010996,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016485,GO:0016545,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017015,GO:0017111,GO:0019098,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030326,GO:0030512,GO:0030534,GO:0030705,GO:0030900,GO:0030990,GO:0031223,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035721,GO:0035735,GO:0036156,GO:0036159,GO:0040024,GO:0042073,GO:0042221,GO:0042623,GO:0042995,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0045184,GO:0045433,GO:0045503,GO:0045505,GO:0045880,GO:0046907,GO:0048065,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051959,GO:0055115,GO:0060173,GO:0060179,GO:0060271,GO:0060322,GO:0060976,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097014,GO:0097542,GO:0097730,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902494,GO:1903844,GO:1903845,GO:1905515,GO:1990939,GO:2000026
Exons4
Evalue2.61e-60
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size501
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04516,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186980.0518875-UTR-P-wetherbeei_contig7415:1723..17531683186980.0518875-UTR-P-wetherbeei_contig7415:1723..1753Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7415 1724..1753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186980.0739734-CDS-P-wetherbeei_contig7415:1753..19091683186980.0739734-CDS-P-wetherbeei_contig7415:1753..1909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7415 1754..1909 +
1683186980.0833879-CDS-P-wetherbeei_contig7415:2108..22851683186980.0833879-CDS-P-wetherbeei_contig7415:2108..2285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7415 2109..2285 +
1683186980.0933797-CDS-P-wetherbeei_contig7415:2475..25431683186980.0933797-CDS-P-wetherbeei_contig7415:2475..2543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7415 2476..2543 +
1683186980.104012-CDS-P-wetherbeei_contig7415:2754..28541683186980.104012-CDS-P-wetherbeei_contig7415:2754..2854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7415 2755..2854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7415.2.1prot_P-wetherbeei_contig7415.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7415 1754..2854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7415.2.1

>prot_P-wetherbeei_contig7415.2.1 ID=prot_P-wetherbeei_contig7415.2.1|Name=mRNA_P-wetherbeei_contig7415.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MAPPRFGGIAGIESDIAATAAGWALYKDYSAELAAMAAQDWIGFRVNFYS
LQDLASRWSDRVKAKLAEGPGLTAVTERIHDQTEKVKRAMPALKYCRGDA
FKEEHWSALLQLGLKREVRLENLTVGHFLSALPQLMDPTLVQYVKELAAR
AQGEVTIREALQELVAW
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mRNA from alignment at P-wetherbeei_contig7415:1724..2854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7415.2.1 ID=mRNA_P-wetherbeei_contig7415.2.1|Name=mRNA_P-wetherbeei_contig7415.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1131bp|location=Sequence derived from alignment at P-wetherbeei_contig7415:1724..2854+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGAAGGAGCACTGCGTCGCCTTCGGCATGGCGCCTCCACGCTTCGG
CGGCATCGCCGGCATCGAGTCGGACATCGCCGCCACGGCCGCCGGCTGGG
CGCTTTACAAGGACTACTCGGCCGAGCTTGCCGCTATGGCCGCCCAGGAC
TGGATCGGCTTCCGCGTCAATTTCTACTCCCTCCAGGTGCGCTCGACGAC
GAGTGTGTTTCTCGATGTATTATGAGAGAGAGCGGAGCAGAAAACTGGCT
GGGCATCCTTTTTCCCTCTCTTTGATAATCTTTTCTATTGGCATGATTTT
CAACCTTTCAACCGGAGCTGTTCTTCGAAATTCCGCGATGCTATTCGTTG
CGACCGTCCGCCATCTCTGCTCTTATCACCATCAGGACCTAGCGTCGCGG
TGGAGCGACCGCGTCAAGGCGAAGCTGGCGGAGGGTCCAGGGCTGACGGC
AGTGACGGAGCGCATCCACGACCAGACGGAGAAGGTCAAGCGGGCCATGC
CGGCTCTCAAATACTGCCGTGGCGACGCCTTCAAGGAGGAGCACTGGTCC
GCCCTCCTCCAGGTGTGCCCAATCGCCGGGAACGACGGAGTTGCGGCAGA
AAACAGAGGGCAACGGAGTGTGCAATGTCTTGCCCGATATTCGGTTCTCC
TGTTGGTGGACCGCAACGCGCTGATTGGGCTCACCGGTCGATTAAACACT
GGGTCTTGATGCCACAACCACGTTTCGAATGCTGCTTGCGCCGCAGGGCA
AGCTGGGGCTGAAGCGGGAGGTGCGGCTGGAAAACCTCACCGTTGGCCAC
TTCCTGTCGGCGCTGCCTCAGTAAGCGGAATGATGCGTATCCAATGTGTC
TGGGCCCATATACGGGGACGTGCTGCTTTGCAGTGCGATTCCTTATTTAC
GTGCATCGGGTAGATAACTCAGGAAGAAGGCAGATAGACGGCAAGATGGG
TCGTTGCCTCCCTTTGATTTGTGTCGGGAACAAGAGGAGTTGAAGAGCGT
TAGCTCCCGCGTGCTTCCGACCGCTTTTCAGGCTGATGGACCCGACGCTG
GTGCAGTACGTCAAGGAGCTGGCGGCACGTGCCCAGGGCGAGGTGACAAT
CCGGGAAGCCCTCCAAGAGCTCGTGGCATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7415:1724..2854+

>mRNA_P-wetherbeei_contig7415.2.1 ID=mRNA_P-wetherbeei_contig7415.2.1|Name=mRNA_P-wetherbeei_contig7415.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig7415:1724..2854+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCTCCACGCTTCGGCGGCATCGCCGGCATCGAGTCGGACATCGC
CGCCACGGCCGCCGGCTGGGCGCTTTACAAGGACTACTCGGCCGAGCTTG
CCGCTATGGCCGCCCAGGACTGGATCGGCTTCCGCGTCAATTTCTACTCC
CTCCAGGACCTAGCGTCGCGGTGGAGCGACCGCGTCAAGGCGAAGCTGGC
GGAGGGTCCAGGGCTGACGGCAGTGACGGAGCGCATCCACGACCAGACGG
AGAAGGTCAAGCGGGCCATGCCGGCTCTCAAATACTGCCGTGGCGACGCC
TTCAAGGAGGAGCACTGGTCCGCCCTCCTCCAGCTGGGGCTGAAGCGGGA
GGTGCGGCTGGAAAACCTCACCGTTGGCCACTTCCTGTCGGCGCTGCCTC
AGCTGATGGACCCGACGCTGGTGCAGTACGTCAAGGAGCTGGCGGCACGT
GCCCAGGGCGAGGTGACAATCCGGGAAGCCCTCCAAGAGCTCGTGGCATG
G
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