mRNA_P-wetherbeei_contig7413.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7413.1.1
Unique NamemRNA_P-wetherbeei_contig7413.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7413.1.1 vs. uniprot
Match: A0A7R9U5F3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5F3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.630e-14
Identity = 59/184 (32.07%), Postives = 89/184 (48.37%), Query Frame = 1 
Query:  706 LDPAFAADDRGRSENGGSSCECLLEFDEL-----RAGLTDMVKTD----WRGLPGAPPMT---EALLDKQFRMYDTDGVGRCGPSALARFLSVVMIWGAQQCVAFSRLTLETDVGTAELAALFRRWEPHDPDLSGSIDAGRLREVLEDMGEAYSEEEMALVLREVDPAGSSVAHFPEFVTWWAS 1221
            LD  F A D  R  NG      +L FDE+         +D+ +      +  LP AP      +ALL +Q+R+YD D       +    F++ + +W        SR   E  +G AEL A++RR+E  D DLS ++DA  L ++LE+MGE Y  +E+ ++  ++D     V    EF  WW S
Sbjct:  221 LDAEFEALDSDR--NG------MLSFDEIFPRNAHVWFSDVAQRSGMDFFESLPPAPRQPCADQALLRQQWRVYDVDHSDTLSKTEYKNFVTSIALWHLTCGFMASRARSECQIGEAELRAIWRRFEKFDADLSCTMDATELGDLLEEMGETYGADELQIIYDDMDADHDGVLDVVEFCRWWCS 396
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7413.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9U5F3_9STRA1.630e-1432.07Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7413contigP-wetherbeei_contig7413:86..2431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1267
Hectar predicted targeting categoryother localisation
Exons5
Cds size1179
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7413.1.1prot_P-wetherbeei_contig7413.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7413 131..2388 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.9203186-UTR-P-wetherbeei_contig7413:85..1301683186979.9203186-UTR-P-wetherbeei_contig7413:85..130Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7413 86..130 +
1683186979.9760158-UTR-P-wetherbeei_contig7413:2388..24311683186979.9760158-UTR-P-wetherbeei_contig7413:2388..2431Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7413 2389..2431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.9286046-CDS-P-wetherbeei_contig7413:130..2231683186979.9286046-CDS-P-wetherbeei_contig7413:130..223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7413 131..223 +
1683186979.9364862-CDS-P-wetherbeei_contig7413:420..6421683186979.9364862-CDS-P-wetherbeei_contig7413:420..642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7413 421..642 +
1683186979.9496183-CDS-P-wetherbeei_contig7413:929..11541683186979.9496183-CDS-P-wetherbeei_contig7413:929..1154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7413 930..1154 +
1683186979.9579563-CDS-P-wetherbeei_contig7413:1427..17051683186979.9579563-CDS-P-wetherbeei_contig7413:1427..1705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7413 1428..1705 +
1683186979.9681525-CDS-P-wetherbeei_contig7413:2027..23881683186979.9681525-CDS-P-wetherbeei_contig7413:2027..2388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7413 2028..2388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7413.1.1

>prot_P-wetherbeei_contig7413.1.1 ID=prot_P-wetherbeei_contig7413.1.1|Name=mRNA_P-wetherbeei_contig7413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=393bp
MPSFGYFTMTVHEARGLPQPSGILIRKLDPFVVIVIDNSPMLGKDPEEKK
LTLERKTATATTPTWEETHVFRCNRGWYCRLECRDEGFISHDLLGSCEFF
VGDTKDGWYPLMDEEGEAAGELRLSLDFRRDRGSMQTAAEALAGQVASYR
GGRGGGGFGDGDGGQVVAAAVADELRRIVRENRGKLTQETEDALLKTCDV
FERGLKSVTFVEDVARKMRELDPAFAADDRGRSENGGSSCECLLEFDELR
AGLTDMVKTDWRGLPGAPPMTEALLDKQFRMYDTDGVGRCGPSALARFLS
VVMIWGAQQCVAFSRLTLETDVGTAELAALFRRWEPHDPDLSGSIDAGRL
REVLEDMGEAYSEEEMALVLREVDPAGSSVAHFPEFVTWWAS*
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mRNA from alignment at P-wetherbeei_contig7413:86..2431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7413.1.1 ID=mRNA_P-wetherbeei_contig7413.1.1|Name=mRNA_P-wetherbeei_contig7413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2346bp|location=Sequence derived from alignment at P-wetherbeei_contig7413:86..2431+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTGGGGGAAAGTGGGACCACCGATCGCTCTTCCATCCCAAAAGATGCC
GTCATTCGGCTACTTTACGATGACCGTCCACGAGGCTCGGGGTCTGCCGC
AACCATCGGGGATCCTGATTCGAAAACTGGATCCGTTTGTGAGATAGGCT
TTCTTGTCTCAGAGAGCTTGCCTGCACGTTACAAGGCAGGGGATGCAATG
TTTATCGCGATCCTTTTGTTAATTACGCCGCGATTAGAGTACAATGCTTA
TCGCGCGATCTATTGTCGCTTAGTGCAATCACAATAAGTGTGACTGCAAT
ATTTACCTCGATTATTTTGTCACTTAATGCAACAGGTGGTGATTGTCATT
GACAACAGTCCAATGCTGGGGAAGGATCCCGAGGAGAAGAAGCTCACGCT
TGAGCGGAAGACGGCCACAGCGACGACACCGACGTGGGAGGAGACCCACG
TCTTTCGGTGCAACCGGGGATGGTACTGTCGCTTGGAGTGTCGAGACGAG
GGCTTTATATCGCACGACCTCCTTGGAAGCTGCGAATTCTTTGTCGGAGA
CACAAAGGTGTAACTGAAATGCGGATTGTGATACGCAGTGACTTGGTTCT
AGTAAATTGTGAAGAGTCGAGCGTGCCTTTCTCCATCACCCAGCTCTTTT
TCGTCCGAGGATCACGTGTCCCTCTTATGTTCGAGAGAGTGGGTTGACTC
AAAAACGTAACATGTAAGACTGCATCACCTCAAAGGTCTGTCGCCCCAAT
TCCATACCTGCCGTCTTCCTCAACGGACTCCCTAATTCCCCTCCAACAAA
TGCCTTGCGAATTCCCTTCTTCCTGTCTTTTTCTCCCCAAACAGGATGGG
TGGTACCCGCTGATGGACGAGGAGGGCGAAGCCGCTGGGGAGCTCCGGCT
GTCGCTCGACTTCCGGCGGGACCGCGGATCCATGCAGACGGCAGCGGAGG
CGCTGGCCGGGCAGGTGGCCAGTTACCGCGGCGGTCGCGGCGGCGGTGGT
TTTGGCGACGGCGATGGTGGGCAGGTCGTGGCAGCAGCGGTGGCGGATGA
GCTGCGACGCATCGTCCGGGTGAGTGAGCGTTTTGAGACCTTAAGCTCGA
CCATTTATAAGTCTGGCTGCTCTGAAAGCGAGGACGGCTGGCGCATCGCA
AGATTGAAGCATGTGCAATACATTTCAACCGCGGAAATGGAACATTATTT
CCATTGAACATCTAAACGATTGAGGCAGACCGGAGATGCCCATGCATTCT
TTCTGATGCCTCTCACGCGTCGCCGGCCACCAGCCGCCTGTTTACCCTGC
CCCACCCGCCGTGATTCATCCCCGTCGTTCCGGCACCCACAGGAGAACCG
CGGCAAGCTGACGCAGGAGACGGAGGACGCCCTTCTCAAGACGTGCGACG
TATTCGAGCGCGGCCTCAAGAGCGTCACCTTCGTCGAAGACGTCGCCCGA
AAGATGCGCGAGCTCGATCCGGCATTTGCTGCTGACGACCGCGGCCGCAG
CGAAAACGGCGGCAGCAGCTGCGAATGCCTGCTGGAGTTTGACGAGCTGC
GAGCGGGGCTGACGGACATGGTGAAGACGGACTGGCGGGGGCTGCCCGGC
GCACCGCCGATGACGGAAGCGTGAGTCGGAGGGCAACGGCCCAGATCACC
TTGGTTTTTTCTACTTCTGTCAACATCGCTGTGTATGTCTCTTTGCCCTG
GACACCAGGACAGGGTTCGAGTGCTTGATTGAGATTAACGTTCCGGACAA
CGGCAAAGCCTGCCTGCAAAGTCTCAAAGCGGATAATACTGCACTCGCTG
CATCTCGCCCCTTGCATGTTATGTTCTGTCTGCATCTGCCGCTACAGCGC
AGTTCATTCTTGTCGTATCCTTGCGCCCAGCTACGACTCCACATGAGCAA
TGAAATCGGTCCCCACCACTCCCGCCCACCGTCCGCCTGCAGGCTGCTGG
ATAAGCAGTTCCGCATGTACGACACCGACGGCGTCGGCCGCTGCGGCCCC
AGCGCGCTCGCCCGCTTCCTCAGCGTCGTCATGATCTGGGGCGCGCAGCA
ATGCGTCGCCTTCAGCCGCCTGACGCTCGAAACTGACGTCGGCACGGCGG
AACTAGCGGCGCTGTTCCGGCGCTGGGAGCCGCATGACCCGGACCTGTCC
GGGAGCATCGACGCTGGGCGGCTGCGGGAAGTGCTGGAGGACATGGGGGA
GGCCTACTCGGAGGAAGAGATGGCGCTGGTGCTGCGCGAGGTGGATCCGG
CGGGGAGCAGCGTGGCGCACTTTCCCGAGTTTGTCACATGGTGGGCCTCG
TGAAATAATCAACCCTTGTAATCACTTGGTTGCATTTTCACCTCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7413:86..2431+

>mRNA_P-wetherbeei_contig7413.1.1 ID=mRNA_P-wetherbeei_contig7413.1.1|Name=mRNA_P-wetherbeei_contig7413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1179bp|location=Sequence derived from alignment at P-wetherbeei_contig7413:86..2431+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCATTCGGCTACTTTACGATGACCGTCCACGAGGCTCGGGGTCT
GCCGCAACCATCGGGGATCCTGATTCGAAAACTGGATCCGTTTGTGGTGA
TTGTCATTGACAACAGTCCAATGCTGGGGAAGGATCCCGAGGAGAAGAAG
CTCACGCTTGAGCGGAAGACGGCCACAGCGACGACACCGACGTGGGAGGA
GACCCACGTCTTTCGGTGCAACCGGGGATGGTACTGTCGCTTGGAGTGTC
GAGACGAGGGCTTTATATCGCACGACCTCCTTGGAAGCTGCGAATTCTTT
GTCGGAGACACAAAGGATGGGTGGTACCCGCTGATGGACGAGGAGGGCGA
AGCCGCTGGGGAGCTCCGGCTGTCGCTCGACTTCCGGCGGGACCGCGGAT
CCATGCAGACGGCAGCGGAGGCGCTGGCCGGGCAGGTGGCCAGTTACCGC
GGCGGTCGCGGCGGCGGTGGTTTTGGCGACGGCGATGGTGGGCAGGTCGT
GGCAGCAGCGGTGGCGGATGAGCTGCGACGCATCGTCCGGGAGAACCGCG
GCAAGCTGACGCAGGAGACGGAGGACGCCCTTCTCAAGACGTGCGACGTA
TTCGAGCGCGGCCTCAAGAGCGTCACCTTCGTCGAAGACGTCGCCCGAAA
GATGCGCGAGCTCGATCCGGCATTTGCTGCTGACGACCGCGGCCGCAGCG
AAAACGGCGGCAGCAGCTGCGAATGCCTGCTGGAGTTTGACGAGCTGCGA
GCGGGGCTGACGGACATGGTGAAGACGGACTGGCGGGGGCTGCCCGGCGC
ACCGCCGATGACGGAAGCGCTGCTGGATAAGCAGTTCCGCATGTACGACA
CCGACGGCGTCGGCCGCTGCGGCCCCAGCGCGCTCGCCCGCTTCCTCAGC
GTCGTCATGATCTGGGGCGCGCAGCAATGCGTCGCCTTCAGCCGCCTGAC
GCTCGAAACTGACGTCGGCACGGCGGAACTAGCGGCGCTGTTCCGGCGCT
GGGAGCCGCATGACCCGGACCTGTCCGGGAGCATCGACGCTGGGCGGCTG
CGGGAAGTGCTGGAGGACATGGGGGAGGCCTACTCGGAGGAAGAGATGGC
GCTGGTGCTGCGCGAGGTGGATCCGGCGGGGAGCAGCGTGGCGCACTTTC
CCGAGTTTGTCACATGGTGGGCCTCGTGA
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