mRNA_P-wetherbeei_contig741.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig741.3.1
Unique NamemRNA_P-wetherbeei_contig741.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A813LAB4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LAB4_POLGL)

HSP 1 Score: 93.6 bits (231), Expect = 2.950e-21
Identity = 60/137 (43.80%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLKTYCRWESPPEMLKRVLGFCRLR----DIHR-----LKRAGKDDLIVAFLHPGGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGLGL 390
            F+GDG+Y  DGG +LQR+W    WREIK CPGRYTT +   R E P E L    G    R    D+H      +   GKD + +  L  GGGLLTY  PD          GT     +VHTLNT +G ARK+  LG+
Sbjct:   11 FLGDGRYPGDGGPALQRLWVWLRWREIKNCPGRYTTSERGVRTEDP-EALLACGGTLLARPVGPDLHHPRPVNISLPGKDPIQIFRLPGGGGLLTYCKPD----------GT-----FVHTLNTESGLARKVDALGI 131          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A2D4C763_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C763_PYTIN)

HSP 1 Score: 86.7 bits (213), Expect = 4.840e-19
Identity = 57/145 (39.31%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLKTYCRWESPP--------------EMLKRVLGFCRLRD--IHRLKRAGKDDLIVAFLHPG-GGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGLGL 390
            FVGDGQ+V DGG +LQR+WE T WR IKGCPGRY         +S P               +L+  LG   ++   +H ++     D +   + P  GG++TYV            GG  +  VYVHTLNTA+G  RKL GL L
Sbjct:    6 FVGDGQFVGDGGATLQRLWEFTRWRMIKGCPGRYVVRDK----QSNPVLINGRRVTTLDARALLEAALGDTTVQSLTVHDVQSERCVDRVQVVVFPDTGGVITYVK------APAANGGGDEPSVYVHTLNTASGLQRKLEGLRL 140          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A6G0WYS0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYS0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.670e-18
Identity = 51/130 (39.23%), Postives = 62/130 (47.69%), Query Frame = 1
Query:    1 MDFVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLKTYCRWESPPEMLKRVLGFCRLRDIHRLKRAGKDDLIVAFLHPGGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGLGL 390
            M FVGDG +V DGG +LQ +WE+  W+ I  CPGRY   K       P E +   L     R I        D + VA    GGG++TY          K  G       +VHTLNT +G  RKL GLGL
Sbjct:    1 MSFVGDGNFVHDGGDTLQELWEAWPWKMIPNCPGRYVVKKNKVLAAMPLEDVLATLTTKPKRVIETTSEKLSDQVHVAVFADGGGVITYC---------KSNG------AFVHTLNTQSGLERKLAGLGL 115          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A1Q9C3D8_SYMMI (Uncharacterized protein n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9C3D8_SYMMI)

HSP 1 Score: 84.3 bits (207), Expect = 7.990e-18
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLKTYCRWESPPEMLKRVLGFCRLRDIHRLKRAGKDDLIVAFLHPGGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGLGL 390
            F GDG+Y  DGG  L+++W+   W+E++ CPGRYTT  +  R ++P  +L  +       ++      GKD ++V     GGGLLTY         D G        VYVHTLNT +G  RK+  L L
Sbjct:    9 FYGDGKYPGDGGAVLEKLWQGHRWKELRNCPGRYTTSDSEARGKAPARLLDDLKILSATVEV---VPEGKDRILVGRFSGGGGLLTYCK-------DGG--------VYVHTLNTESGLIRKIDALQL 118          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A7S0MQF3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MQF3_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 3.200e-17
Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLKTYCRWESPPEMLKRVLGFCRLRDIHRLKRAGKDDLIVAFLHPGGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGLGL 390
            FVGDGQY+ DGG +LQR WE   W+EI  CPGRYT  +   R  SP ++L   L       +        D + VA    GGGL++Y   D                ++VHTLNT +G  RKL  +G+
Sbjct:   24 FVGDGQYIGDGGATLQRFWECAPWKEIPRCPGRYTLKRGLHRSTSPADLL--ALAHLDFPVVVYELPDRPDPVAVARFPDGGGLISYCKTDQD--------------IFVHTLNTTSGLQRKLEWIGV 135          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A8K1CIF7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIF7_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 7.190e-15
Identity = 53/146 (36.30%), Postives = 66/146 (45.21%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRY-----------------TTLKTYCRWESPPEMLKRVLGFCRLRDIHRLKRAGKDDLI-VAFLHPGGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGLGL 390
            FVGDG Y+ DGGR+LQR+WE   W+ IK CPGRY                 T+L T          L  V        +H L+     D + V      GG++TY          +G  G     +YVHTLNTA+G  RKL GL L
Sbjct:   11 FVGDGAYIGDGGRTLQRLWEFVTWKMIKNCPGRYIIKHKRSNPVLIDGQSVTSLDTQA-------FLSAVFNEDVTFTVHDLQSERCQDRVQVVVFRDTGGVITYCK------ASQGQDGEPQ-TLYVHTLNTASGLKRKLEGLRL 142          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: W2RAB4_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RAB4_PHYPN)

HSP 1 Score: 71.2 bits (173), Expect = 4.620e-13
Identity = 48/144 (33.33%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLK---TYCRWESPP-------EMLKRVLGFCR-------LRDIHRLKRAGKDDLIVAFLHP-GGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGL 384
            FVGDG YV DGG  LQR+WE   W+ I+ CPGRY       T    +  P       +++++ LG          + D+   +   + +++V      GGG++TY   +  G             +YVHTLNTA+G  RKL GL
Sbjct:   10 FVGDGNYVGDGGELLQRLWEFATWKMIRNCPGRYVIKNKKSTPFLIDGVPVTSIDTGDVVRQALGTTGREVPTIVVHDLESPRCVDRVNVVVFGAEGCGGGVITYCKQEQDGNA-----------IYVHTLNTASGLCRKLGGL 142          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A6A3JGJ0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JGJ0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.120e-13
Identity = 52/147 (35.37%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLKTYCRWESP-------------PEMLKRVL----GFCRLRDIHRLKRAGKDDLIVAFLH----PGGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGL 384
            FVGDG YV DGG  LQR+WE  +W+ I+ CPGRY       + ++P              + ++R L    G      +H L      D I   +      GGG++TY   +    +D+   G     VYVHTLNTA+G  RKL GL
Sbjct:    7 FVGDGNYVGDGGELLQRLWEFASWKMIRNCPGRYIIKH---KKQAPFLIDGVAVTAIDTGDFVRRALATSEGEVPTIAVHNLVSPRCVDRIKVVVFGAEGSGGGVITYCKQETIS-SDEAQDGAA---VYVHTLNTASGLRRKLRGL 146          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A329RXY4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RXY4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.380e-13
Identity = 48/148 (32.43%), Postives = 68/148 (45.95%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTL---KTYCRWESPP-------EMLKRVLGFCR-------LRDIHRLKRAGKDDLIVAFLHP-GGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGLGLPW 396
            FVGDG YV DGG  LQR+WE   W+ I+ CPGRY      K     +  P       + ++R L           + D+   +   +  ++V      GGG++TY   +  G             +YVHTLNTA+G  RKL GL + +
Sbjct:   11 FVGDGNYVGDGGELLQRLWEFATWKMIRNCPGRYIIKHKKKNPFLIDGLPVTSIDTGDFVRRALATTEGEVPTIVVHDLESPRCVDRAKVVVFGAEGCGGGVITYCKQEQDGEA-----------IYVHTLNTASGLRRKLGGLQIDY 147          
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Match: A0A833WNM0_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WNM0_PHYIN)

HSP 1 Score: 69.3 bits (168), Expect = 2.620e-12
Identity = 50/147 (34.01%), Postives = 65/147 (44.22%), Query Frame = 1
Query:    7 FVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRY-----------------TTLKTYCRWESPPEMLKRVLGFCRLRDIHRLKRAGKDDLIVAFLHP----GGGLLTYVHPDLHGVTDKGYGGTGDIVVYVHTLNTAAGFARKLVGL 384
            FVGDG YV DGG  LQ +WE   W+ I+ CPGRY                 T+++T    +     L  V G      +H L+     D +   +      GGG++TY   D  G             +YVHTLNTA+G  RKL GL
Sbjct:   11 FVGDGNYVGDGGILLQHLWEFATWKMIRNCPGRYIIQHKKKNPFLIDKVPVTSIET---GDFVRNALATVEGDVPSIVVHDLESPRCVDRVKVVVFGAEGCGGGVITYCKQDHDGA-----------FIYVHTLNTASGLRRKLGGL 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig741.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A813LAB4_POLGL2.950e-2143.80Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A2D4C763_PYTIN4.840e-1939.31Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A6G0WYS0_9STRA3.670e-1839.23Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1Q9C3D8_SYMMI7.990e-1837.50Uncharacterized protein n=4 Tax=Symbiodinium TaxID... [more]
A0A7S0MQF3_9CHLO3.200e-1738.28Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A8K1CIF7_PYTOL7.190e-1536.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2RAB4_PHYPN4.620e-1333.33Uncharacterized protein n=10 Tax=Phytophthora para... [more]
A0A6A3JGJ0_9STRA6.120e-1335.37Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A329RXY4_9STRA9.380e-1332.43Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A833WNM0_PHYIN2.620e-1234.01Uncharacterized protein n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig741contigP-wetherbeei_contig741:7766..8161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000026028
Model size396
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.77e-16
EggNOG OGs2E2F2@1|root,2S9NT@2759|Eukaryota,1MHW1@121069|Pythiales
Descriptionfunction. Source PGD
Cds size396
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.624544-CDS-P-wetherbeei_contig741:7765..81611683186979.624544-CDS-P-wetherbeei_contig741:7765..8161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig741 7766..8161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig741.3.1prot_P-wetherbeei_contig741.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig741 7766..8161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig741.3.1

>prot_P-wetherbeei_contig741.3.1 ID=prot_P-wetherbeei_contig741.3.1|Name=mRNA_P-wetherbeei_contig741.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MDFVGDGQYVCDGGRSLQRIWESTNWREIKGCPGRYTTLKTYCRWESPPE
MLKRVLGFCRLRDIHRLKRAGKDDLIVAFLHPGGGLLTYVHPDLHGVTDK
GYGGTGDIVVYVHTLNTAAGFARKLVGLGLPW
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mRNA from alignment at P-wetherbeei_contig741:7766..8161-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig741.3.1 ID=mRNA_P-wetherbeei_contig741.3.1|Name=mRNA_P-wetherbeei_contig741.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig741:7766..8161- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTTGTTGGCGACGGGCAGTACGTCTGTGACGGCGGCCGTAGCCT TCAGCGCATCTGGGAGAGCACCAACTGGAGGGAGATCAAGGGCTGCCCGG GCCGCTACACCACGCTGAAGACCTACTGCCGCTGGGAGTCCCCCCCGGAA ATGCTGAAGCGTGTCCTCGGCTTCTGTCGGCTGCGCGACATCCACCGGCT CAAGCGGGCTGGCAAGGACGACCTGATCGTCGCCTTCCTGCACCCAGGCG GCGGGCTCCTGACGTATGTCCACCCGGACCTGCATGGTGTCACAGACAAG GGTTACGGCGGCACCGGCGACATCGTCGTCTACGTCCACACGCTCAACAC GGCCGCCGGCTTCGCCCGCAAACTAGTCGGGCTCGGCCTGCCCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig741:7766..8161-

>mRNA_P-wetherbeei_contig741.3.1 ID=mRNA_P-wetherbeei_contig741.3.1|Name=mRNA_P-wetherbeei_contig741.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig741:7766..8161- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTTGTTGGCGACGGGCAGTACGTCTGTGACGGCGGCCGTAGCCT
TCAGCGCATCTGGGAGAGCACCAACTGGAGGGAGATCAAGGGCTGCCCGG
GCCGCTACACCACGCTGAAGACCTACTGCCGCTGGGAGTCCCCCCCGGAA
ATGCTGAAGCGTGTCCTCGGCTTCTGTCGGCTGCGCGACATCCACCGGCT
CAAGCGGGCTGGCAAGGACGACCTGATCGTCGCCTTCCTGCACCCAGGCG
GCGGGCTCCTGACGTATGTCCACCCGGACCTGCATGGTGTCACAGACAAG
GGTTACGGCGGCACCGGCGACATCGTCGTCTACGTCCACACGCTCAACAC
GGCCGCCGGCTTCGCCCGCAAACTAGTCGGGCTCGGCCTGCCCTGG
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