mRNA_P-wetherbeei_contig741.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig741.2.1
Unique NamemRNA_P-wetherbeei_contig741.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig741.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig741contigP-wetherbeei_contig741:3589..4827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1239
Hectar predicted targeting categorysignal peptide
Exons1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.4875305-UTR-P-wetherbeei_contig741:3588..38671683186979.4875305-UTR-P-wetherbeei_contig741:3588..3867Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig741 3589..3867 -
1683186979.5083423-UTR-P-wetherbeei_contig741:4587..48271683186979.5083423-UTR-P-wetherbeei_contig741:4587..4827Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig741 4588..4827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.49808-CDS-P-wetherbeei_contig741:3867..45871683186979.49808-CDS-P-wetherbeei_contig741:3867..4587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig741 3868..4587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig741.2.1prot_P-wetherbeei_contig741.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig741 3868..4587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig741.2.1

>prot_P-wetherbeei_contig741.2.1 ID=prot_P-wetherbeei_contig741.2.1|Name=mRNA_P-wetherbeei_contig741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
MVVVVAVVTSAMATAASAAVAASAGATTALAAATAASAGEAAAAGMTAAA
AWPGTPALSPTGAKNRRGTARRRTDTTPRGTVVRGTAFTKAVTKAGHHAA
VTAVGHPMVAGVCENTMTAVAAAKGGFDGACASASSLLSAVDQMRRQRLW
LRWKWPATVMVAAAVAAARHSRPRSGCSGLKSRAGRGRARATAAAATAAG
QRRRWWRRQWRGAAPSRYDATASWSATTRDDGGLRRRVL*
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mRNA from alignment at P-wetherbeei_contig741:3589..4827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig741.2.1 ID=mRNA_P-wetherbeei_contig741.2.1|Name=mRNA_P-wetherbeei_contig741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1239bp|location=Sequence derived from alignment at P-wetherbeei_contig741:3589..4827- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCCGCCACGCCATCGGGGAGACAGCAGTTTTAGCGGTGTAGTGGCC
CGTATTGGCTGGAATCCGTTTGACGAACGGTTTGGACCGCCGTGTGAACA
GAGAGACGGTGGGGTTGGCGGCGACGGCGACGGCATGGCGGATCCTCCGC
GCGGCGGCCTGTTTCCGTTTGGTAAGCCTTTTGGACCGCCGCGCGATCGG
AGCGGCGGCCGCGGCGGCGGCGGCGGCTTTAGCGGCGGCGATGGTGGTGG
TGGTGGCGGTGGTGACATCGGCGATGGCGACGGCAGCTTCGGCGGCAGTG
GCGGCTTCCGCCGGAGCGACGACGGCTTTGGCGGCGGCGACAGCGGCTTC
GGCTGGGGAGGCGGCGGCGGCAGGGATGACGGCAGCAGCAGCATGGCCAG
GCACGCCCGCGTTAAGCCCTACCGGGGCGAAGAACCGGAGGGGTACAGCG
CGTCGCCGAACGGATACGACGCCCCGCGGCACCGTGGTGCGTGGGACGGC
GTTTACGAAGGCGGTTACGAAGGCGGGCCACCATGCGGCGGTTACGGCGG
TGGGCCATCCCATGGTCGCGGGAGTTTGTGAGAACACAATGACGGCGGTC
GCTGCGGCAAAGGGCGGCTTTGATGGCGCATGCGCATCAGCTAGCTCATT
GTTGTCAGCTGTTGACCAAATGCGGCGACAGCGGTTATGGCTGCGGTGGA
AGTGGCCTGCGACGGTGATGGTAGCGGCAGCGGTGGCCGCGGCACGCCAT
TCACGCCCGCGCTCAGGCTGCTCGGGCTTGAAGAGCCGAGCGGGCCGTGG
CAGGGCAAGAGCGACGGCCGCCGCAGCGACGGCAGCGGGGCAACGGCGAC
GGTGGTGGCGGCGGCAATGGCGAGGCGCGGCGCCAAGTCGATACGACGCC
ACGGCATCATGGTCTGCAACAACTCGTGACGATGGTGGTCTGCGGCGGCG
CGTTTTGTAGCGGGTTGCGTGCGTCAGCCAATTAGCGGCGGCCAGGTAGG
GGCGGCGTGAATAGCACCTTGGCGAGCGAAGCCGCAAAGGCAGTACTGCC
TCGCAGTTTCGTTACCATTGTGTTGGATCTCCGCCCAGCCCAGGCTTTGA
ACCATTGGGTGATTGAGTCGGCGCCGGTGCGGGCCGATTGAGTTGGGGCG
CCGCATGCTTGGCACAAGCTGAACGGCTCTGCGATGGAGAATGTAGATGG
CGGCGGCGAGAGGACATTCAATTAACTTGCTTCGCCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig741:3589..4827-

>mRNA_P-wetherbeei_contig741.2.1 ID=mRNA_P-wetherbeei_contig741.2.1|Name=mRNA_P-wetherbeei_contig741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig741:3589..4827- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTGGTGGTGGCGGTGGTGACATCGGCGATGGCGACGGCAGCTTC
GGCGGCAGTGGCGGCTTCCGCCGGAGCGACGACGGCTTTGGCGGCGGCGA
CAGCGGCTTCGGCTGGGGAGGCGGCGGCGGCAGGGATGACGGCAGCAGCA
GCATGGCCAGGCACGCCCGCGTTAAGCCCTACCGGGGCGAAGAACCGGAG
GGGTACAGCGCGTCGCCGAACGGATACGACGCCCCGCGGCACCGTGGTGC
GTGGGACGGCGTTTACGAAGGCGGTTACGAAGGCGGGCCACCATGCGGCG
GTTACGGCGGTGGGCCATCCCATGGTCGCGGGAGTTTGTGAGAACACAAT
GACGGCGGTCGCTGCGGCAAAGGGCGGCTTTGATGGCGCATGCGCATCAG
CTAGCTCATTGTTGTCAGCTGTTGACCAAATGCGGCGACAGCGGTTATGG
CTGCGGTGGAAGTGGCCTGCGACGGTGATGGTAGCGGCAGCGGTGGCCGC
GGCACGCCATTCACGCCCGCGCTCAGGCTGCTCGGGCTTGAAGAGCCGAG
CGGGCCGTGGCAGGGCAAGAGCGACGGCCGCCGCAGCGACGGCAGCGGGG
CAACGGCGACGGTGGTGGCGGCGGCAATGGCGAGGCGCGGCGCCAAGTCG
ATACGACGCCACGGCATCATGGTCTGCAACAACTCGTGACGATGGTGGTC
TGCGGCGGCGCGTTTTGTAG
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