mRNA_P-wetherbeei_contig740.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig740.2.2
Unique NamemRNA_P-wetherbeei_contig740.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A812UKF8_9DINO (BHLH140 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UKF8_9DINO)

HSP 1 Score: 135 bits (339), Expect = 1.220e-33
Identity = 67/151 (44.37%), Postives = 95/151 (62.91%), Query Frame = 1
Query:   10 LKLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLE 462
            L+LLVL G+PGSGKST A+R+   GW VVNQD+ G+R+ C+K  R  L+   +VVVDRCN + +QR  W ++  +            G +WLDVP + C  RVL+R  H TLPP + S+ ++  F++ +  P+AEEGF  +WR+ S  D E
Sbjct:  867 LRLLVLCGLPGSGKSTTAQRLGQGGWVVVNQDSLGSRQACMKTARAALKQQGRVVVDRCNVNAAQRVIWTQLAVQEF---DLQPDQMGCVWLDVPDHECGRRVLQRFGHNTLPPREASLKVIRGFAKKWQAPSAEEGFAHLWRIASDVDAE 1014          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A5J4YL06_PORPP (Bifunctional polynucleotide phosphatase/kinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL06_PORPP)

HSP 1 Score: 128 bits (322), Expect = 3.980e-33
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   13 KLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQ-KSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLEAAAAALLD 486
            ++L++VGIPGSGKST AE + + GW  ++QD  G R  C   + R L  G+  V+DRCNFD  QR PW+++ R       S G   GA+ L  P+  CI RV  R  HPTLPP    S  +V  F+  F PP ++EG DF   V S+ DL+   + + D
Sbjct:  168 RVLIMVGIPGSGKSTMAEMLVARGWKRISQDELGNRYRCEVELIRALLKGQNCVIDRCNFDVDQRRPWIRLAR-------SRGCRVGAIVLATPLEQCIARVRSRESHPTLPPNNPNSEEVVRRFALQFEPPTSDEGIDFARHVRSNTDLDQLCSEMAD 319          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A8J2SED4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SED4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.600e-33
Identity = 68/158 (43.04%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   13 KLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTL--PPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLEAAAAAL 480
            +L++L G+PGSGKS+ A  +   GWAVVNQD+ G R  C +A  R  + G +VV+DRCN D +QR  W +IL        +GG    A+WL  P++ C+ RVL RP HPTL  P  +K   +V +F ++F PP  +E  D + ++  +DD +A AAAL
Sbjct:  319 RLVILAGLPGSGKSSLAAALEKRGWAVVNQDSLGNRRKCERACARAFERGDRVVIDRCNHDRAQRAHWTRILER------AGGGYKVAVWLTTPVDSCVERVLARPAHPTLAGPGAEK---VVRNFEKSFDPPGEDE-VDAIIKLAPTDDYDAVAAAL 466          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A6H5KDH3_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH3_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.690e-32
Identity = 70/156 (44.87%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   13 KLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLEAAAAAL 480
            ++LVL GIPGSGKST A  +   GW+VVNQDT G+RE C +  ++ L+ G +V++DRCNFD SQR  WL +    A   S       A+WLD+P+++C  RV  R  HPTL     S  IV  +++ F PP  +EGF  V R     DL  A A L
Sbjct:   36 RILVLAGIPGSGKSTLASFLEDMGWSVVNQDTLGSREKCRRRAQQVLEKGGRVLIDRCNFDQSQRVTWLDL----AVSHSLHKDACIAVWLDIPIDVCQGRVQSRVGHPTLGAGLASAGIVKRYAKDFRPPHRKEGFHTVLRCHGDQDLSEAIALL 187          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A812INR9_9DINO (KIF13B protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812INR9_9DINO)

HSP 1 Score: 130 bits (327), Expect = 5.330e-32
Identity = 69/161 (42.86%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    4 RHLKLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLEAAAAALLD 486
            R  K+L+LVG+PG+GKS  A R+++ GW VVNQD  G R+ CV A +  L   R+VVVDRCN    QR  WL++       A      A  +WLD+P ++C +RVL+R  H TLPP +KS+ ++ +F+R    P   EG    WRV   DDL+   A   D
Sbjct: 2423 RPFKMLILVGLPGAGKSRLAGRLAALGWEVVNQDHLGDRKACVAAAKEALAKSRRVVVDRCNVTRLQRRVWLEL-------ADDYEVCAACIWLDIPEDVCGDRVLQRFGHETLPPEEKSLEVIAAFARRLEAPMEAEGL-VRWRVKEDDDLDDVLAEYQD 2575          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A812GI21_9DINO (C1QTNF9 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812GI21_9DINO)

HSP 1 Score: 127 bits (319), Expect = 6.170e-31
Identity = 68/156 (43.59%), Postives = 97/156 (62.18%), Query Frame = 1
Query:   10 LKLLVLVGIPGSGKSTFAERMSSSG-WAVVNQDTTGTREGCVKAVRRHLQAGR-KVVVDRCNFDPSQREPWLKILRET---APGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLE 462
            L+LLVL G+PGSGKS+ A+R+  SG W VVNQD  G+R+ C+K  R  L+    ++V+DRCN + +QR  W ++  +     PG        G +WLDVP + C +RVLRR  H TLPP + S+  +  F++ +  P+AEEGF  +WR+ S  D E
Sbjct:  881 LRLLVLCGLPGSGKSSLAQRLGLSGNWVVVNQDCLGSRQACMKEARAALRRPNGRIVIDRCNVNVAQRAIWTQLAVQDFDLEPGQM------GCVWLDVPDHECGHRVLRRFAHNTLPPHEASLXXIRGFAKKWQAPSAEEGFAHLWRIASEVDAE 1030          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A813GQ52_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GQ52_POLGL)

HSP 1 Score: 124 bits (312), Expect = 5.380e-30
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 1
Query:   10 LKLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGR-KVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGF 423
            L++LVL G+PGSGKST A R +  GW VVNQD+ G+R+ C+KA RR L   + ++VVDRCN D SQR  W+++  +   G S   +  G +WLDV    C  RVL+R  H TLPP Q S+ ++ SF+ ++ PP + EGF
Sbjct: 1309 LRVLVLCGLPGSGKSTLASRFAEQGWEVVNQDSLGSRQACMKAARRALSRPQGRLVVDRCNADVSQRAIWIQLAMQDF-GLSP--AELGCVWLDVQHEECGLRVLQRFGHSTLPPRQASLKVIKSFASSWQPPTSSEGF 1444          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A813L6L5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L6L5_POLGL)

HSP 1 Score: 124 bits (311), Expect = 7.300e-30
Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 1
Query:    4 RHLKLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLEAAAAALLD 486
            R L++L+LVG+PGSGKS+ + R+S  GW VVNQD  G R  C    R+ L AG++VV+DRCN    QR  WL +  E    A+        +WLDV    C  RVLRR  H TLP    S+ ++ +F+++   P   EGF  +WR     +L+ A A L D
Sbjct:   39 RPLRVLLLVGLPGSGKSSLSARLSRFGWTVVNQDILGDRRACAALARKSLLAGQRVVIDRCNVTRLQRRVWLGVADEHEVAAA-------CIWLDVDEAECGERVLRRFGHATLPAEGSSLEVISAFAQSLETPVEAEGF-VLWRARDDGELDEAVAELRD 191          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A2V3ITA8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITA8_9FLOR)

HSP 1 Score: 112 bits (280), Expect = 2.830e-28
Identity = 64/157 (40.76%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   13 KLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLEAAAAALL 483
            ++LVLVGIPGSGKSTFA+++   GWA ++QD  GTR  C      HL  G  VV+DRCNFD +QR+ W+         AS+ GS  G +     +  C+ RV  R  HPTL   Q SV ++   + +F  P   EGF F   + S  D     + LL
Sbjct:   31 RMLVLVGIPGSGKSTFAKQLCELGWARISQDDLGTRRKCEVLTVEHLCTGTNVVIDRCNFDKAQRKRWVDY-------ASARGSACGVIVFATSLQDCLQRVRNRRGHPTLEGDQ-SVGVIKRVAESFEFPDRTEGFAFCRVIRSETDATRVLSELL 179          
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Match: A0A835YAU3_9CHLO (FCP1 homology domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YAU3_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 4.260e-28
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   16 LLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRHLQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMNICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSSDDLEAAAAALL 483
            LLVLVGIPGSGKST ++ +   GW+ +NQD  G+R  C  A R  L+ G  VVVDRCN D  QR  W+++ R+      +G     AL L +P+ +C  R L R  HPTL     +  ++  F   F P    EGFD V   TSS ++++AAA LL
Sbjct:    4 LLVLVGIPGSGKSTLSQHLVQHGWSHINQDALGSRPACEDACRAALRQGLNVVVDRCNHDSFQRSHWVRLARQ------AGRVRVVALQLLLPVGVCKQRALARVGHPTLG-LHNAEGVIDRFYHEFEPADTREGFDRVMTATSSAEVDSAAAELL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig740.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812UKF8_9DINO1.220e-3344.37BHLH140 protein n=1 Tax=Symbiodinium natans TaxID=... [more]
A0A5J4YL06_PORPP3.980e-3342.14Bifunctional polynucleotide phosphatase/kinase n=1... [more]
A0A8J2SED4_9STRA4.600e-3343.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5KDH3_9PHAE2.690e-3244.87Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A812INR9_9DINO5.330e-3242.86KIF13B protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812GI21_9DINO6.170e-3143.59C1QTNF9 protein n=1 Tax=Symbiodinium sp. CCMP2592 ... [more]
A0A813GQ52_POLGL5.380e-3047.48Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813L6L5_POLGL7.300e-3041.61Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A2V3ITA8_9FLOR2.830e-2840.76Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A835YAU3_9CHLO4.260e-2842.95FCP1 homology domain-containing protein n=1 Tax=Ed... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig740contigP-wetherbeei_contig740:6258..6949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog55529.EKX54840
PFAMsAAA_33
Model size492
Max annot lvl2759|Eukaryota
KEGG koko:K08073,ko:K14165
Hectar predicted targeting categorysignal peptide
Exons2
Evalue8.23e-29
EggNOG OGsCOG0241@1|root,KOG2134@2759|Eukaryota
EC2.7.1.78,3.1.3.16,3.1.3.32,3.1.3.48
DescriptionDNA-3'-diphospho-5'-guanosine diphosphatase
Cds size492
COG categoryE
BRITEko00000,ko01000,ko01009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186978.9425466-CDS-P-wetherbeei_contig740:6257..65671683186978.9425466-CDS-P-wetherbeei_contig740:6257..6567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig740 6258..6567 -
1683186978.9548163-CDS-P-wetherbeei_contig740:6767..69491683186978.9548163-CDS-P-wetherbeei_contig740:6767..6949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig740 6768..6949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig740.2.2prot_P-wetherbeei_contig740.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig740 6258..6949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig740.2.2

>prot_P-wetherbeei_contig740.2.2 ID=prot_P-wetherbeei_contig740.2.2|Name=mRNA_P-wetherbeei_contig740.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
VRHLKLLVLVGIPGSGKSTFAERMSSSGWAVVNQDTTGTREGCVKAVRRH
LQAGRKVVVDRCNFDPSQREPWLKILRETAPGASSGGSGAGALWLDVPMN
ICINRVLRRPYHPTLPPTQKSVFIVHSFSRTFVPPAAEEGFDFVWRVTSS
DDLEAAAAALLDG*
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mRNA from alignment at P-wetherbeei_contig740:6258..6949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig740.2.2 ID=mRNA_P-wetherbeei_contig740.2.2|Name=mRNA_P-wetherbeei_contig740.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=692bp|location=Sequence derived from alignment at P-wetherbeei_contig740:6258..6949- (Phaeothamnion wetherbeei SAG_119_79)
GTGCGTCACCTGAAACTTCTCGTGCTTGTAGGCATCCCTGGCTCGGGCAA GTCGACGTTTGCCGAGCGCATGTCCTCATCAGGCTGGGCCGTGGTGAACC AAGACACGACTGGAACAAGGGAGGGCTGCGTTAAAGCAGTGCGGCGCCAT TTGCAGGCGGGAAGAAAGGTCGTCGTGGACAGGTGAGAGACAACTTTTGG AAAAGTTATGGCACTTTGCGCGCCAAAACGCTCTTCACTCTCGTGCGTGA TTCTCAGGAAGACATTTTGTCCCTTTCCTCGCCTCCCTTGGCCAACCACC CTTCTCATTTTAATGGGCAACCTCTCACTTCTTCTTCTTCCAGGATTCGT TGATCGCGTTTCCTCTTACTCCTGCTTTTCAGGTGCAATTTTGACCCTTC TCAGCGAGAGCCCTGGCTGAAAATCCTCCGAGAGACGGCACCGGGCGCTT CAAGCGGTGGCAGCGGCGCCGGCGCCCTATGGCTCGACGTGCCGATGAAC ATCTGCATCAATCGCGTTCTTCGACGGCCATACCATCCGACACTGCCGCC GACGCAAAAGTCTGTCTTCATCGTCCATAGTTTCAGCCGGACCTTTGTGC CGCCGGCAGCGGAGGAAGGCTTCGATTTTGTATGGCGGGTCACTTCGTCC GACGACCTCGAGGCTGCCGCCGCGGCGCTTCTTGACGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig740:6258..6949-

>mRNA_P-wetherbeei_contig740.2.2 ID=mRNA_P-wetherbeei_contig740.2.2|Name=mRNA_P-wetherbeei_contig740.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig740:6258..6949- (Phaeothamnion wetherbeei SAG_119_79)
GTGCGTCACCTGAAACTTCTCGTGCTTGTAGGCATCCCTGGCTCGGGCAA
GTCGACGTTTGCCGAGCGCATGTCCTCATCAGGCTGGGCCGTGGTGAACC
AAGACACGACTGGAACAAGGGAGGGCTGCGTTAAAGCAGTGCGGCGCCAT
TTGCAGGCGGGAAGAAAGGTCGTCGTGGACAGGTGCAATTTTGACCCTTC
TCAGCGAGAGCCCTGGCTGAAAATCCTCCGAGAGACGGCACCGGGCGCTT
CAAGCGGTGGCAGCGGCGCCGGCGCCCTATGGCTCGACGTGCCGATGAAC
ATCTGCATCAATCGCGTTCTTCGACGGCCATACCATCCGACACTGCCGCC
GACGCAAAAGTCTGTCTTCATCGTCCATAGTTTCAGCCGGACCTTTGTGC
CGCCGGCAGCGGAGGAAGGCTTCGATTTTGTATGGCGGGTCACTTCGTCC
GACGACCTCGAGGCTGCCGCCGCGGCGCTTCTTGACGGCTGA
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