mRNA_P-wetherbeei_contig7396.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7396.1.1
Unique NamemRNA_P-wetherbeei_contig7396.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7396.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7396contigP-wetherbeei_contig7396:1..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size171
Hectar predicted targeting categorysignal peptide
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186978.217014-CDS-P-wetherbeei_contig7396:0..1181683186978.217014-CDS-P-wetherbeei_contig7396:0..118Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7396 1..118 +
1683186978.227097-CDS-P-wetherbeei_contig7396:563..6161683186978.227097-CDS-P-wetherbeei_contig7396:563..616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7396 564..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7396.1.1prot_P-wetherbeei_contig7396.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7396 1..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7396.1.1

>prot_P-wetherbeei_contig7396.1.1 ID=prot_P-wetherbeei_contig7396.1.1|Name=mRNA_P-wetherbeei_contig7396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
EAAAAAAAAEAAVAAAAAAAAAMAVAAAMAAMAAAAGRSSCGGGGGNDGG
GGGRAT*
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mRNA from alignment at P-wetherbeei_contig7396:1..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7396.1.1 ID=mRNA_P-wetherbeei_contig7396.1.1|Name=mRNA_P-wetherbeei_contig7396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=616bp|location=Sequence derived from alignment at P-wetherbeei_contig7396:1..616+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGGCGGCGGCGGCGGCGGCAGCGGAGGCGGCGGTGGCGGCGGCGGC
GGCGGCGGCGGCGGCGATGGCAGTGGCGGCGGCGATGGCGGCGATGGCGG
CGGCGGCGGGCCGCAGCTGTGGTCGCAAGGGCCGTCGCTGGGATCGATGC
CGCCGCTACAGCCGCCGGCTCGGTGGGCGCCGCCGGGCCAGGCATCGGCA
GCGGCGGCAAGGACACCTGTGGCGGTAGCGGTGGCCGCAACGGCTGGAAG
CGCGGCGGCGTCGTCGCCGTCGCCGGCCGGGCCGCCGGCGCCGGCGCGCC
CCCAGCCGCGGCGGCTGCTGGGGCCGGAGGACGTGCAGGCGATCGCGTGG
CGGGCCGTCTCGGAGGCGCGGCTGTCGGCGGCATCGGCGGAGCGGTTCGG
CGGCCGGCCTCGCCCGGCAGGGGCGGGATCGGTGGGAAGCGAGGCGGGCG
GACGGCCAGGAGTGTCGGCCACGACCATGGTGATGCGGGCCACGACGACT
GCTGCGATGGAGGCGGCTGCCGCCGCTGCCGCTGCTGCGGTGGAGACATC
TGGGCCGCTGGAGCATGCGGCGGTGGTGGCGGCAACGACGGCGGAGGCGG
GGGGCGAGCGACCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7396:1..616+

>mRNA_P-wetherbeei_contig7396.1.1 ID=mRNA_P-wetherbeei_contig7396.1.1|Name=mRNA_P-wetherbeei_contig7396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig7396:1..616+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGGCGGCGGCGGCGGCGGCAGCGGAGGCGGCGGTGGCGGCGGCGGC
GGCGGCGGCGGCGGCGATGGCAGTGGCGGCGGCGATGGCGGCGATGGCGG
CGGCGGCGGGCCGCAGCTCATGCGGCGGTGGTGGCGGCAACGACGGCGGA
GGCGGGGGGCGAGCGACCTGA
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