mRNA_P-wetherbeei_contig7386.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7386.2.1
Unique NamemRNA_P-wetherbeei_contig7386.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7386.2.1 vs. uniprot
Match: D8LMX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.310e-19
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:   19 RRAQLLQQLAASVPYHDAIMAATHKLDHVTAASAAHTAAASFVPAETARGHAPMNGYDVKTVLRDARFRLGLALREAGVAKSGYAHAIVMQLA-PCERAPF 318
            +R Q+LQ+LAASVPY +A   A  KLDH+T A+AAH     F+P + +RGH PM GY+   V +DARFRLGL LREAGV+    AH  VM+ A P   AP+
Sbjct:  333 KRMQVLQRLAASVPYAEACANAEAKLDHITVATAAHFD--QFLPHDRSRGHCPMLGYNTGEVFKDARFRLGLYLREAGVSGCKSAHVAVMRAAGPRAPAPY 431
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BLAST of mRNA_P-wetherbeei_contig7386.2.1 vs. uniprot
Match: A0A7S3HHH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHH1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.650e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    4 DERDARRAQLLQQLAASVPYHDAIMAATHKLDHVTAASAAHTAAASFVPAETARGHAPMNGYDVKTVLRDARFRLGLALREAGVAKS 264
            +E + RR ++L ++AA VPY+DAI  A  KLDH+TAA+ AH     + P E +RGH P+NG+    V++D+RFRL  AL  +GVA S
Sbjct:   41 EEEELRRIEMLNRIAAQVPYYDAIQDAESKLDHITAAAKAHE---YYAPDEQSRGHLPLNGFTDGRVIQDSRFRLAEALHRSGVAGS 124
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BLAST of mRNA_P-wetherbeei_contig7386.2.1 vs. uniprot
Match: A0A7S3YM66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM66_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 8.580e-12
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   22 RAQLLQQLAASVPYHDAIMAATHKLDHVTAASAAHTAAASFVPAETARGHAPMNGYDVKTVLRDARFRLGLALREAGVAKSGYAHAIVMQLA-PCERAPF 318
            R  +L+++AA VPY+D +      L   TA     T A  F   + ARG+ PM GY  K V  D RF++GLALREAG+A + +A  +V Q+A P   APF
Sbjct:   66 RLAMLEKIAAQVPYYDRLQEIEADLTKDTA----FTRANLFAEGDKARGYHPMFGYSDKKVFTDIRFKIGLALREAGIAHTSHAAQVVAQMAGPRAPAPF 161
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BLAST of mRNA_P-wetherbeei_contig7386.2.1 vs. uniprot
Match: A0A0P1A7W3_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7W3_PLAHL)

HSP 1 Score: 50.4 bits (119), Expect = 6.770e-5
Identity = 35/103 (33.98%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:   19 RRAQLLQQLAASVPYHDAIMAATHKLDHV---TAASAAHTAAASFVPAETARGHAPMNGYDVKTVLRDARFRLGLALREAGVAKSGYAHAIVMQLAPCERAPF 318
            +R   L  L    PY  +I+  T   D     T A  A+  AA    + T  G  PMNGYD + + ++ARF+LG+ALR AG+  S YA   +  +  C    +
Sbjct:  542 QRLAALNALKKETPYAQSIVNITPNPDRTRQETIAFRANVVAAQEGLSITETGLFPMNGYDCEALFKNARFKLGIALRNAGLNSSEYARQALANVKICNAGSY 644
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7386.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMX3_ECTSI4.310e-1953.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3HHH1_9STRA1.650e-1648.28Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3YM66_HETAK8.580e-1243.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P1A7W3_PLAHL6.770e-533.98Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7386contigP-wetherbeei_contig7386:2782..3102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4792.ETI39843
Preferred nameCCDC148
Model size321
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000182
EggNOG OGs28NJT@1|root,2QV5F@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_003960.1
DescriptionCoiled-coil domain containing 148
Cds size321
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186978.0243657-CDS-P-wetherbeei_contig7386:2781..31021683186978.0243657-CDS-P-wetherbeei_contig7386:2781..3102Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7386 2782..3102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7386.2.1prot_P-wetherbeei_contig7386.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7386 2782..3102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7386.2.1

>prot_P-wetherbeei_contig7386.2.1 ID=prot_P-wetherbeei_contig7386.2.1|Name=mRNA_P-wetherbeei_contig7386.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
ADERDARRAQLLQQLAASVPYHDAIMAATHKLDHVTAASAAHTAAASFVP
AETARGHAPMNGYDVKTVLRDARFRLGLALREAGVAKSGYAHAIVMQLAP
CERAPF*
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mRNA from alignment at P-wetherbeei_contig7386:2782..3102-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7386.2.1 ID=mRNA_P-wetherbeei_contig7386.2.1|Name=mRNA_P-wetherbeei_contig7386.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig7386:2782..3102- (Phaeothamnion wetherbeei SAG_119_79)
GCCGACGAGCGGGACGCGCGCCGCGCTCAGCTGCTGCAGCAGTTGGCGGC
GTCGGTGCCGTACCACGATGCGATCATGGCGGCGACGCACAAGCTCGACC
ACGTCACGGCAGCGTCGGCGGCGCACACCGCGGCGGCGTCCTTCGTGCCC
GCCGAGACGGCCCGCGGCCATGCGCCCATGAACGGTTACGACGTCAAGAC
GGTGCTGCGGGACGCCCGGTTCCGGCTGGGGCTGGCGCTGCGCGAGGCCG
GTGTGGCAAAGAGCGGCTACGCGCACGCCATCGTCATGCAGCTGGCGCCG
TGCGAGCGGGCGCCGTTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7386:2782..3102-

>mRNA_P-wetherbeei_contig7386.2.1 ID=mRNA_P-wetherbeei_contig7386.2.1|Name=mRNA_P-wetherbeei_contig7386.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig7386:2782..3102- (Phaeothamnion wetherbeei SAG_119_79)
GCCGACGAGCGGGACGCGCGCCGCGCTCAGCTGCTGCAGCAGTTGGCGGC
GTCGGTGCCGTACCACGATGCGATCATGGCGGCGACGCACAAGCTCGACC
ACGTCACGGCAGCGTCGGCGGCGCACACCGCGGCGGCGTCCTTCGTGCCC
GCCGAGACGGCCCGCGGCCATGCGCCCATGAACGGTTACGACGTCAAGAC
GGTGCTGCGGGACGCCCGGTTCCGGCTGGGGCTGGCGCTGCGCGAGGCCG
GTGTGGCAAAGAGCGGCTACGCGCACGCCATCGTCATGCAGCTGGCGCCG
TGCGAGCGGGCGCCGTTTTGA
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