mRNA_P-wetherbeei_contig7386.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7386.1.2
Unique NamemRNA_P-wetherbeei_contig7386.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: A0A6H5K8M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 4.080e-83
Identity = 154/332 (46.39%), Postives = 206/332 (62.05%), Query Frame = 1
Query:    4 IRRRITLDEGRLNELIVRHLYRRGAFKTARRFSEHPTLRSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLGGAASLADACRPLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            +RR   L+E  L+  I+ HLYRRGAF+ A +FSE  T                                             A+  A+    LVE+H V+ A+ + +L  AERW   RR  L  +GS+LE QLARL FL  L+ + P QRR+A+++A+ R   +A  HM E+Q+LMG LLW+G LE SPY+ LLS+ELW     ++A D  R++GL RES L+VAFRAG++A+PTL+KMAAVV+ SN +W+ M ELP+E+PL   + +HS+FSCPVSRE ST DNPPVLLKCGH V RS++ R+A++G  S+FKCPTCP EQ E +   L L
Sbjct:  195 VRRTPALNEKALHTAIITHLYRRGAFRAAAKFSEDST---------------------------------------------ASIPAETTSHLVEIHGVLDALDKHNLAPAERWFEKRRKALEGVGSSLEFQLARLRFLRFLESADPGQRREAMMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRISGLSRESILSVAFRAGILALPTLVKMAAVVRGSNLEWNGMRELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHAVLRSSVSRLARNG--SRFKCPTCPVEQMENETMPLTL 479          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: D8LT28_ECTSI (RING-Gid-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT28_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 2.760e-81
Identity = 137/251 (54.58%), Postives = 184/251 (73.31%), Query Frame = 1
Query:  250 AASL-ADACRPLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            AAS+ A+    LVE+H V+ A+ + +L  AERW   RR  L  +GS+LE QLARL FL  L+ + P +RR+A+++A+ R   +A  HM E+Q+LMG LLW+G LE SPY+ LLS ELW     ++A D  R++GL RES L+VAFRAG++A+PTL+KMAAVV+ SN++W+ M ELP+E+PL   + +HS+FSCPVSRE ST DNPPVLLKCGHVV RS++ R+A++G  S+FKCPTCP EQ E +   L L
Sbjct:    5 AASIPAETTSHLVEIHGVLDALDKHNLVPAERWFEKRRKALERVGSSLEFQLARLRFLRFLESADPGKRREAMMYARERVMPVAGRHMRELQELMGSLLWSGNLEASPYSHLLSLELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHVVLRSSVSRLARNG--SRFKCPTCPVEQMENETMPLTL 253          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: A0A1D1XIK9_9ARAE (Protein RMD5 A n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XIK9_9ARAE)

HSP 1 Score: 226 bits (577), Expect = 9.200e-64
Identity = 113/241 (46.89%), Postives = 158/241 (65.56%), Query Frame = 1
Query:  277 PLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            P +E++ ++ A++ RDL+ A  WA+A+RD L + GS+LEL+L RL F+ ILQ      R  A+ +A+      A  HM+E+Q+LM CLLWAGRL+RSPY   LS  LW +    +A   CRL G   ES L+VA  AGV  +PTL+K+A+V+ +  ++W  M +LPV + L +   FHSIF CPVSREQ T DNPP+L+ CGH +C+ ++ +++K G    FKCP CP+E T A  R LHL
Sbjct:  151 PFLEMYTILEAMRSRDLEPALSWASAQRDRLLQNGSSLELKLHRLQFVEILQKGD---RIMALKYARTYLAPFASVHMAEVQKLMVCLLWAGRLDRSPYVEFLSPTLWDSVAEELAQQFCRLLGQSHESPLSVAIAAGVQGLPTLLKLASVMAAKKQEWQAMKQLPVAVDLGREFQFHSIFVCPVSREQGTDDNPPMLMPCGHALCKQSIMKLSK-GSTRTFKCPYCPQEATVAQCRQLHL 387          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: A0A7R9U2J0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J0_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.540e-61
Identity = 117/244 (47.95%), Postives = 150/244 (61.48%), Query Frame = 1
Query:  265 DACRPLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTE-LPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVL 993
            D    L  LH + SA+Q+R+L  A RW A RR    E    LE  L RL FL IL   G   + +A+ FAQ RFP+ A+ HM EIQQ MG LLWAGRL++SPY  L SEE W  + +A    GC   GLP  S L VAF AG+  VP L KM AVV S   DW  + E LP E+ L     FHS+FSCPV+R+++  DNPPV+LKCGHV+ RS++ ++ +   G + KCPTCPR+    +++ L
Sbjct:  148 DEVSALCRLHGIASALQQRNLKPALRWVAERRGGTGE----LEFMLVRLQFLEILSQPGDAVQEEALAFAQERFPDFADGHMREIQQCMGALLWAGRLDKSPYRTLASEEAWQKSVQAFLEVGCEAEGLPMHSHLLVAFVAGLQFVPILAKMLAVVVSDG-DWTKLGERLPAEVSLPPEFTFHSLFSCPVTRDEADRDNPPVVLKCGHVILRSSLAKLTR--AGGRIKCPTCPRDMRADEVQPL 384          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: A0A4S4E7T8_CAMSI (Uncharacterized protein n=4 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4E7T8_CAMSI)

HSP 1 Score: 218 bits (556), Expect = 9.260e-61
Identity = 105/241 (43.57%), Postives = 155/241 (64.32%), Query Frame = 1
Query:  277 PLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            P +E+++++ A++ R+L+ A  WAA  RD+L + GS LEL+L RL F+ +LQM G D+   A+ +A+      A NHM+E+Q+LM CLLWAGRL+ SPY+ LLS   W      +    C + G   ES L+V   AGV  +PTL+K+  V+    ++W +M +LPV + LD+   FHSIF CPVSREQ++ +NPP+LL CGHV+C+ ++ +++K+     FKCP CP E   A  R L+ 
Sbjct:  149 PFLEMYQILDAMRARNLEPALNWAATNRDKLEQNGSDLELRLHRLQFVEMLQMRGRDE---ALNYARTFLAPFASNHMTEVQKLMACLLWAGRLDSSPYSELLSPSHWDKLAEELTRQFCNILGQSCESPLSVTIAAGVQGLPTLLKLMNVMTGKKQEWQSMKQLPVPVDLDREFQFHSIFVCPVSREQASEENPPMLLSCGHVLCKQSITKLSKNNSTRPFKCPYCPSEVEVAQCRQLYF 386          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: A0A0D2WQV5_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQV5_CAPO3)

HSP 1 Score: 218 bits (555), Expect = 2.860e-60
Identity = 108/244 (44.26%), Postives = 162/244 (66.39%), Query Frame = 1
Query:  277 PLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQ---SSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            P +E++ ++ A +++DL  A RWA+  R  L  IGS+LE +L +L FL  LQ+     RR A+ +A+ +F   + +H++E+Q+LMGCLL+ GR   +PY  L+    W     A   D C + G+  +S L V+F AG  A+PTL+KMA+V+Q   +S+  W +  ELPVEI L K   FHS+F+CPVSREQ++P+NPP+++KCGHVVC+ ++ R++K+G   +FKCP CP EQT AD  ++H 
Sbjct:  179 PFIEMYNIMEAFKQQDLAPALRWASENRQALERIGSSLEFKLHKLEFLRRLQID----RRDALQYARVQFVPFSHSHLNEVQRLMGCLLYYGRAPPTPYMELVDSIHWTEIAHAFTRDCCAMLGMTYDSPLFVSFLAGCAALPTLLKMASVMQGRGASSTLWTSKDELPVEIELGKDSQFHSVFACPVSREQASPENPPMMMKCGHVVCKLSLERLSKNG--GRFKCPYCPVEQTPADAHIVHF 416          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: D5ACI4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ACI4_PICSI)

HSP 1 Score: 215 bits (548), Expect = 1.220e-59
Identity = 113/251 (45.02%), Postives = 158/251 (62.95%), Query Frame = 1
Query:  247 GAASLADACRPLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            GAASL     P VE++E++  ++ R+L  A  WA+A  DEL   GS LE +L  L ++ IL+      +R A+ FA++ F   A  HM EIQ+LMGCLLW GRLE SPY+ LLS   W      +  + C L G   +S L V   AG  A+PTL+K++ V+ +  ++W TM +LPVEI LD+   FHSIF+CPVSR+QST +NPP+L+ CGHV+C+ ++ +++K    + FKCP CP E T A  R L+ 
Sbjct:  141 GAASLK---APFVEMYEMLEQMKARNLQPALAWASAHSDELVRKGSALEFKLHALQYMQILERGI---QRDALTFARSSFAPFAPLHMEEIQKLMGCLLWTGRLENSPYSELLSSSHWDALSLELTQECCSLLGQSYKSPLHVTISAGCQALPTLLKLSNVMANKKQEWQTMRQLPVEIELDREFQFHSIFACPVSRDQSTEENPPMLMPCGHVLCKQSIVKLSKSNTRT-FKCPYCPLEATVAQCRQLYF 384          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: A0A6A4KW99_9ERIC (Uncharacterized protein (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4KW99_9ERIC)

HSP 1 Score: 215 bits (548), Expect = 1.290e-59
Identity = 106/241 (43.98%), Postives = 157/241 (65.15%), Query Frame = 1
Query:  277 PLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            P +E++E+++A++ RDL+ A  WAAA RD+L + GS L+L+L RL F+ ILQ  G D+   A+ +A+      A +HM+E+Q+LM CLLWAGRL+ SPYA LLS   W      +    C + G P +S L+V   AGV  +PTL+K+  V+    ++W +M +LPV + LD    FHS+F CPVSREQ++ +NPP+LL CGHV+C+ ++ +++K+     FKCP CP E   +  R L+L
Sbjct:  149 PFMEMYEILTAMKSRDLEPALTWAAANRDKLKQNGSHLDLKLHRLQFVEILQNRGRDE---ALNYARTFLAPFALDHMAEVQKLMACLLWAGRLDISPYADLLSPTHWDDLIEEVNRQFCNILGQPFQSPLSVTVAAGVQGLPTLLKLMNVMMGKKQEWQSMKQLPVPVDLDTEFQFHSVFVCPVSREQASDENPPMLLSCGHVLCKQSITKLSKNNSTRPFKCPYCPSEVEVSKCRQLYL 386          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: UPI0009016103 (protein RMD5 homolog A-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009016103)

HSP 1 Score: 215 bits (548), Expect = 1.330e-59
Identity = 102/241 (42.32%), Postives = 154/241 (63.90%), Query Frame = 1
Query:  277 PLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            P +E++ ++ A++ R+L  A  WAAA  ++L + GS +E++L R HF+ ILQ  G D+   A+ +A+  FP     +MSE+Q+LM CLLWAG+L+ SPY+ LLS   W      +  + C L G   ES L+V   AGV  +PTL+K+A ++    ++W +M +LPV + LD+   FHSIF CPVSR+Q+T DNPP+LL CGHV+C+ ++ +++K+     FKCP CP E      R L++
Sbjct:  150 PFLEIYRILEAMRSRNLQPALSWAAANHEKLEQSGSDIEMKLHRQHFVEILQNRGRDE---ALDYARTVFPPFGAKYMSEVQKLMACLLWAGKLDSSPYSDLLSPVHWDKLAEELTREFCNLIGQSYESPLSVTIAAGVQGLPTLLKLANLMTMKRQEWQSMKQLPVPVDLDREFQFHSIFVCPVSRDQATDDNPPMLLSCGHVLCKQSIAKLSKNNSARPFKCPYCPSEIEAGQCRQLYI 387          
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Match: A0A0D6R489_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R489_ARACU)

HSP 1 Score: 215 bits (547), Expect = 1.570e-59
Identity = 108/241 (44.81%), Postives = 154/241 (63.90%), Query Frame = 1
Query:  277 PLVELHEVVSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQRRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELWATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKDWDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRSTMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL 999
            P VE+++++  ++ ++L  A  WA A  DEL + GS+LE +L RL F+ ILQ      R  A+ +A++ F   A  HM+EIQ+LM CLLW  RLE SPY+  LS   W      +  + C L G   ES L V   AG  A+PTL+K+A V+ +  ++W TM +LPVEI LD+   FHSIF+CPVSR+QST +NPP+L++CGHV+C+ ++ +++K G    FKCP CP E T A+ R L+ 
Sbjct:  145 PFVEMYQMLEQMKAKNLQPALAWAGAHHDELLKKGSSLEFKLHRLQFMQILQNCN---RNDALQYARSSFAPFAPQHMTEIQKLMACLLWKDRLEVSPYSEFLSVSHWDALALELTQECCSLLGQSYESPLHVTISAGCQALPTLLKLANVMANKRQEWQTMKQLPVEIELDREFQFHSIFACPVSRDQSTDENPPMLMRCGHVLCKQSIAKLSK-GSARTFKCPYCPDETTVANCRQLYF 381          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7386.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8M5_9PHAE4.080e-8346.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT28_ECTSI2.760e-8154.58RING-Gid-type domain-containing protein n=1 Tax=Ec... [more]
A0A1D1XIK9_9ARAE9.200e-6446.89Protein RMD5 A n=1 Tax=Anthurium amnicola TaxID=16... [more]
A0A7R9U2J0_9STRA3.540e-6147.95Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4S4E7T8_CAMSI9.260e-6143.57Uncharacterized protein n=4 Tax=Camellia sinensis ... [more]
A0A0D2WQV5_CAPO32.860e-6044.26Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
D5ACI4_PICSI1.220e-5945.02Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A6A4KW99_9ERIC1.290e-5943.98Uncharacterized protein (Fragment) n=2 Tax=Rhodode... [more]
UPI00090161031.330e-5942.32protein RMD5 homolog A-like n=2 Tax=Ipomoea TaxID=... [more]
A0A0D6R489_ARACU1.570e-5944.81Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7386contigP-wetherbeei_contig7386:4..2665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LT28
Preferred nameRMND5A
PFAMsCLTH,zf-RING_UBOX
Model size2162
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
Exons3
Evalue1.02e-86
EggNOG OGsCOG5109@1|root,KOG2817@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-08_003890.1
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
Cds size1002
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.9500723-CDS-P-wetherbeei_contig7386:3..4351683186977.9500723-CDS-P-wetherbeei_contig7386:3..435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7386 4..435 +
1683186977.9632044-CDS-P-wetherbeei_contig7386:637..10001683186977.9632044-CDS-P-wetherbeei_contig7386:637..1000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7386 638..1000 +
1683186977.9735298-CDS-P-wetherbeei_contig7386:1300..15071683186977.9735298-CDS-P-wetherbeei_contig7386:1300..1507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7386 1301..1507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.9837122-UTR-P-wetherbeei_contig7386:1507..26651683186977.9837122-UTR-P-wetherbeei_contig7386:1507..2665Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7386 1508..2665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7386.1.2prot_P-wetherbeei_contig7386.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7386 4..1507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7386.1.2

>prot_P-wetherbeei_contig7386.1.2 ID=prot_P-wetherbeei_contig7386.1.2|Name=mRNA_P-wetherbeei_contig7386.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
RIRRRITLDEGRLNELIVRHLYRRGAFKTARRFSEHPTLRSGGSSSGGGG
GSGGGGSGGFGGFGGGGGSSSGGSGGGGDSLGGAASLADACRPLVELHEV
VSAIQRRDLDAAERWAAARRDELAEIGSTLELQLARLHFLSILQMSGPDQ
RRQAVVFAQARFPELAENHMSEIQQLMGCLLWAGRLERSPYAALLSEELW
ATACRAMAADGCRLAGLPRESGLAVAFRAGVMAVPTLIKMAAVVQSSNKD
WDTMTELPVEIPLDKSMLFHSIFSCPVSREQSTPDNPPVLLKCGHVVCRS
TMGRIAKHGPGSKFKCPTCPREQTEADIRVLHL*
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mRNA from alignment at P-wetherbeei_contig7386:4..2665+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7386.1.2 ID=mRNA_P-wetherbeei_contig7386.1.2|Name=mRNA_P-wetherbeei_contig7386.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2662bp|location=Sequence derived from alignment at P-wetherbeei_contig7386:4..2665+ (Phaeothamnion wetherbeei SAG_119_79)
CGGATCCGGCGACGCATTACCCTCGACGAAGGGCGGCTCAACGAGCTCAT CGTGCGCCATCTCTACCGCCGCGGCGCCTTCAAGACGGCGCGCCGCTTCT CCGAACACCCGACGCTGCGTAGCGGCGGCAGTAGCTCCGGCGGCGGCGGC GGCTCCGGCGGCGGCGGCTCCGGCGGCTTCGGCGGCTTCGGTGGCGGCGG CGGCTCCAGCTCCGGCGGCAGCGGCGGTGGCGGCGATTCCTTGGGCGGCG CGGCGTCGCTGGCGGATGCATGCCGACCGCTGGTGGAGCTGCACGAGGTG GTGTCGGCGATTCAGCGGCGGGACTTGGACGCGGCGGAGCGGTGGGCGGC GGCGCGGCGCGACGAGCTTGCGGAGATCGGGTCGACGCTCGAGCTGCAGC TGGCGCGCCTCCACTTCCTCTCCATCCTGCAGGTGCGCTTACGCACTGGA ACAAGATATGATTCGGTGAATAACCATTATGTGGACAGAGAAATTAAAAA ACGAAGTTCTGTTACCTTTTGAAGATGAACTTGCATCGTCCTGACCCTTG GCTGTTCCCGGCTATTGACCTTTCCTTCCGTTCCTTTATTGCGGATTCTT GACTTCGACGTGTCGCCCGCTCCCGATTCGGCAGATGTCGGGCCCCGACC AGCGGCGGCAGGCCGTCGTTTTCGCGCAGGCGCGCTTCCCGGAGCTCGCG GAGAACCACATGTCGGAGATCCAGCAGCTCATGGGCTGCCTACTGTGGGC GGGCCGCCTGGAGCGGTCGCCCTACGCAGCGCTGCTCTCGGAGGAGCTGT GGGCGACGGCTTGCCGCGCCATGGCGGCGGACGGCTGCCGGCTGGCTGGG CTGCCGCGCGAGAGCGGGCTGGCAGTGGCGTTCCGGGCGGGCGTCATGGC GGTGCCGACGCTCATCAAGATGGCGGCGGTGGTACAGAGCAGCAACAAGG ACTGGGACACCATGACGGAGCTGCCCGTCGAGATCCCGCTCGACAAGGTG TACAAAGCGATGCTGGCGAAAAAGAAAGCTTTCTGGCGGTTCTTTGTTTT GGCAATAGTCCGATTGTGGCTGCCGCTGGACTTTTGGTTTTCTGGTAGAC ACTTCTGGCTGGCTTTTTGGCAAAGCGTCCTGTCGTGATGGGAGCGCGCC GGTCTATGTTTTGCGCTGTTCGCTTTTCCTTACGAGCTAACCCTGTCTTT GCCTCTTGCCGCTGCCGCTGAACCTGCGCCCCACCTTGCCCTTCCTTCTC TCCTCGGCACGCCGACAACAACATCAATGACGGCTGCTGCGCTGCAGTCA ATGCTCTTCCACAGCATCTTCTCGTGCCCCGTCTCCCGGGAGCAGAGCAC GCCCGACAACCCGCCGGTGCTGCTTAAGTGCGGCCACGTTGTGTGCCGCT CCACCATGGGCCGCATTGCCAAGCACGGCCCGGGCTCTAAGTTCAAGTGT CCCACCTGCCCCCGTGAGCAGACCGAGGCTGATATCCGCGTCCTGCATTT GTGATGATGACGACGGGTCGGATCCGCCGATCGATCCGCCGATCGATCCG CCGATCGATCCGCCGATCGATCCGCCGATTGATCCGTCGGCCCGTCTCCG CCGAAGCTGCGGCGGAGGTTACCGTGGATACGCCGAGCGGTCGTGGCGTA TTTCGGCTTTGCGGCGGTTGGTCATGTTACAGCCGGTCAGCTGCGGTAAG CTGCTGCGGCGTCCGCAGTGGTGCGATGGGAGACCGAAGGTGCTGGGCAA GTTGTGCGGTGGCGTGGTGCCACGGCAGCCGCCTGCATCGACGGCGGAAT GGGGAGCGTGCGACGGTAATCGTGCGGGCGGCTGCGGCCGCAGGGCTGCA ACAGTGACTGCGTTACAAAAGGGTACAAGCGGCTGCGATGGCGTGGCGGC TGTGCGGCGGCGGCTTCAGTAGCCGGATATCTGCGTTCAGGTTGGCCCGT CTCGCACCGTTTGGTGCTCGCCGCTGGCACATAGCAAGAGGAGCGAAGAA GTACAAACGGGATGCAGAAAAGTCGGAGAAGCATGATGACATATACTCAC TTACGCACGCCGATTTGGTTTCTGTTGCCGGCCCCGCGTCGCGTTCTTGG CGAGCCACGTCCGGGCACGTCATACCTGGTTAGTCGGGCACTGGCGGAAA AGGATGCAGGAGCCGGTTCCGGTTTTTGACTGGCGGCGGCTTTGCGAGCG TGTGAGATTGATTGCTCGCAGAGCCCCGCTTCGGTAGTTTGAAAGTTGGT GCCTGCGGCGAAAGCGTGTAAGTAAGGGGGGTAGACAGAGCTTGGAGGAG GACGACGGGACAAGGGGCGGGAGCGTGCAACGCCCGGTCTACTGCGACGG GGCGCTGTGCCTAGCTCGGCTGCGGCAGCAGGGTTTGGGCATATAGTTTG GACGGTGTCGGCGTCGGTGGCGGAAGCGGCTGCGGTGGAGGCGGCGGCAC TGCCGTCTTGCTGCACGCAAACCAGTGCGTCGCTGTGGCGCCAGGCTGTC CAGCGGGCTGCGAGGAGACATCCGTCCTATCTCTTCATGTCAAGATTTAT TCGGATACTTTCTGTGCTTTGGCCCTCACCCACACGCTTTCACATGGCAA AGATGCTTAGTGGTTCTTCGAGCTCACGACCGCTGTCTAAACCCACAACG TAATCTAAGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7386:4..2665+

>mRNA_P-wetherbeei_contig7386.1.2 ID=mRNA_P-wetherbeei_contig7386.1.2|Name=mRNA_P-wetherbeei_contig7386.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig7386:4..2665+ (Phaeothamnion wetherbeei SAG_119_79)
CGGATCCGGCGACGCATTACCCTCGACGAAGGGCGGCTCAACGAGCTCAT
CGTGCGCCATCTCTACCGCCGCGGCGCCTTCAAGACGGCGCGCCGCTTCT
CCGAACACCCGACGCTGCGTAGCGGCGGCAGTAGCTCCGGCGGCGGCGGC
GGCTCCGGCGGCGGCGGCTCCGGCGGCTTCGGCGGCTTCGGTGGCGGCGG
CGGCTCCAGCTCCGGCGGCAGCGGCGGTGGCGGCGATTCCTTGGGCGGCG
CGGCGTCGCTGGCGGATGCATGCCGACCGCTGGTGGAGCTGCACGAGGTG
GTGTCGGCGATTCAGCGGCGGGACTTGGACGCGGCGGAGCGGTGGGCGGC
GGCGCGGCGCGACGAGCTTGCGGAGATCGGGTCGACGCTCGAGCTGCAGC
TGGCGCGCCTCCACTTCCTCTCCATCCTGCAGATGTCGGGCCCCGACCAG
CGGCGGCAGGCCGTCGTTTTCGCGCAGGCGCGCTTCCCGGAGCTCGCGGA
GAACCACATGTCGGAGATCCAGCAGCTCATGGGCTGCCTACTGTGGGCGG
GCCGCCTGGAGCGGTCGCCCTACGCAGCGCTGCTCTCGGAGGAGCTGTGG
GCGACGGCTTGCCGCGCCATGGCGGCGGACGGCTGCCGGCTGGCTGGGCT
GCCGCGCGAGAGCGGGCTGGCAGTGGCGTTCCGGGCGGGCGTCATGGCGG
TGCCGACGCTCATCAAGATGGCGGCGGTGGTACAGAGCAGCAACAAGGAC
TGGGACACCATGACGGAGCTGCCCGTCGAGATCCCGCTCGACAAGTCAAT
GCTCTTCCACAGCATCTTCTCGTGCCCCGTCTCCCGGGAGCAGAGCACGC
CCGACAACCCGCCGGTGCTGCTTAAGTGCGGCCACGTTGTGTGCCGCTCC
ACCATGGGCCGCATTGCCAAGCACGGCCCGGGCTCTAAGTTCAAGTGTCC
CACCTGCCCCCGTGAGCAGACCGAGGCTGATATCCGCGTCCTGCATTTGT
GA
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