mRNA_P-wetherbeei_contig7385.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7385.2.1
Unique NamemRNA_P-wetherbeei_contig7385.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7385.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7385contigP-wetherbeei_contig7385:1997..3094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1100
Hectar predicted targeting categoryother localisation
Exons1
Cds size1098
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.9226396-CDS-P-wetherbeei_contig7385:1996..30941683186977.9226396-CDS-P-wetherbeei_contig7385:1996..3094Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7385 1997..3094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7385.2.1prot_P-wetherbeei_contig7385.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7385 1997..3094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7385.2.1

>prot_P-wetherbeei_contig7385.2.1 ID=prot_P-wetherbeei_contig7385.2.1|Name=mRNA_P-wetherbeei_contig7385.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=366bp
GGGSGKLSDHGQRRRLRAAAADSLTPRSRAAVMSAVGGGGDGGGGGSHDG
GGIVGRGASRSKTGPLRSQPVNGEDSPAASTAERSRHSRQGVGIGGCGLG
PPLLSVDNASASGDGGVSFRFRSVLAGAPSEDIAFLREALRGASGGGGGV
LSWGFGRGCTVVPPAGDRARRTRFAAWLQALGFEGRGAGGGRDKITYFVK
RKVAEGLARELAAAAASIKRSVSEPGSAGENVAPVTSFELDHRGIGVNDG
AAAAWRRSGCGARPPNIFRDHGGNGSGGDGGCGGEGRGSDENGGSDRGAD
VCDGCCVKGAGAGAALMEPIACSVSPSGGTHRASAAPVSAGVMGPVPLHG
TPLPPRLRRGGGSDGN
back to top

mRNA from alignment at P-wetherbeei_contig7385:1997..3094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7385.2.1 ID=mRNA_P-wetherbeei_contig7385.2.1|Name=mRNA_P-wetherbeei_contig7385.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1098bp|location=Sequence derived from alignment at P-wetherbeei_contig7385:1997..3094+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCTCCGGCAAGCTGAGTGACCACGGCCAGCGGCGGCGCCTGCG
CGCGGCCGCCGCCGATTCCTTGACTCCTCGCTCTCGTGCAGCGGTCATGT
CAGCAGTCGGTGGCGGCGGTGACGGCGGCGGCGGCGGCAGCCACGATGGT
GGCGGCATCGTCGGGCGGGGGGCCTCGCGGTCCAAAACAGGTCCTTTACG
GTCGCAGCCCGTCAATGGGGAGGACTCCCCGGCAGCCTCTACAGCGGAGA
GATCCAGACATTCGCGACAAGGTGTCGGGATTGGCGGCTGTGGTTTGGGC
CCGCCCTTGCTGTCCGTAGATAACGCGTCTGCCAGCGGCGACGGAGGGGT
ATCATTCCGGTTCCGGTCTGTCTTGGCAGGCGCGCCATCAGAGGACATCG
CCTTTCTTCGTGAGGCGCTCCGGGGGGCCAGCGGCGGCGGTGGAGGCGTC
TTGAGCTGGGGCTTTGGCCGGGGATGTACCGTGGTCCCACCTGCTGGGGA
CCGTGCCCGCCGCACTCGGTTTGCCGCTTGGTTGCAAGCGCTCGGCTTTG
AAGGGCGCGGCGCCGGCGGTGGTCGCGACAAGATCACTTATTTCGTCAAG
CGCAAGGTCGCGGAAGGCCTAGCGCGCGAGCTTGCCGCCGCCGCTGCGAG
CATCAAGCGGTCCGTTTCTGAGCCCGGGTCTGCCGGCGAGAATGTGGCGC
CTGTCACATCATTTGAGCTCGACCACCGGGGCATCGGAGTCAACGACGGC
GCGGCCGCGGCCTGGCGTCGTAGCGGCTGTGGGGCGCGGCCTCCAAATAT
CTTCCGCGACCATGGCGGCAATGGAAGCGGCGGTGATGGTGGCTGTGGCG
GCGAAGGTCGCGGCAGTGACGAGAATGGCGGCAGCGATAGGGGTGCCGAT
GTTTGCGACGGATGCTGCGTTAAGGGCGCAGGCGCCGGTGCAGCATTAAT
GGAGCCGATCGCGTGCAGTGTATCCCCATCAGGAGGAACGCATCGGGCAA
GCGCGGCGCCTGTTTCGGCGGGCGTGATGGGACCGGTTCCGCTCCACGGA
ACGCCTCTTCCGCCGCGGCTGCGGCGCGGCGGCGGCAGTGACGGCAAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7385:1997..3094+

>mRNA_P-wetherbeei_contig7385.2.1 ID=mRNA_P-wetherbeei_contig7385.2.1|Name=mRNA_P-wetherbeei_contig7385.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1098bp|location=Sequence derived from alignment at P-wetherbeei_contig7385:1997..3094+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCTCCGGCAAGCTGAGTGACCACGGCCAGCGGCGGCGCCTGCG
CGCGGCCGCCGCCGATTCCTTGACTCCTCGCTCTCGTGCAGCGGTCATGT
CAGCAGTCGGTGGCGGCGGTGACGGCGGCGGCGGCGGCAGCCACGATGGT
GGCGGCATCGTCGGGCGGGGGGCCTCGCGGTCCAAAACAGGTCCTTTACG
GTCGCAGCCCGTCAATGGGGAGGACTCCCCGGCAGCCTCTACAGCGGAGA
GATCCAGACATTCGCGACAAGGTGTCGGGATTGGCGGCTGTGGTTTGGGC
CCGCCCTTGCTGTCCGTAGATAACGCGTCTGCCAGCGGCGACGGAGGGGT
ATCATTCCGGTTCCGGTCTGTCTTGGCAGGCGCGCCATCAGAGGACATCG
CCTTTCTTCGTGAGGCGCTCCGGGGGGCCAGCGGCGGCGGTGGAGGCGTC
TTGAGCTGGGGCTTTGGCCGGGGATGTACCGTGGTCCCACCTGCTGGGGA
CCGTGCCCGCCGCACTCGGTTTGCCGCTTGGTTGCAAGCGCTCGGCTTTG
AAGGGCGCGGCGCCGGCGGTGGTCGCGACAAGATCACTTATTTCGTCAAG
CGCAAGGTCGCGGAAGGCCTAGCGCGCGAGCTTGCCGCCGCCGCTGCGAG
CATCAAGCGGTCCGTTTCTGAGCCCGGGTCTGCCGGCGAGAATGTGGCGC
CTGTCACATCATTTGAGCTCGACCACCGGGGCATCGGAGTCAACGACGGC
GCGGCCGCGGCCTGGCGTCGTAGCGGCTGTGGGGCGCGGCCTCCAAATAT
CTTCCGCGACCATGGCGGCAATGGAAGCGGCGGTGATGGTGGCTGTGGCG
GCGAAGGTCGCGGCAGTGACGAGAATGGCGGCAGCGATAGGGGTGCCGAT
GTTTGCGACGGATGCTGCGTTAAGGGCGCAGGCGCCGGTGCAGCATTAAT
GGAGCCGATCGCGTGCAGTGTATCCCCATCAGGAGGAACGCATCGGGCAA
GCGCGGCGCCTGTTTCGGCGGGCGTGATGGGACCGGTTCCGCTCCACGGA
ACGCCTCTTCCGCCGCGGCTGCGGCGCGGCGGCGGCAGTGACGGCAAT
back to top