mRNA_P-wetherbeei_contig7384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7384.1.1
Unique NamemRNA_P-wetherbeei_contig7384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7384contigP-wetherbeei_contig7384:255..1224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionAquarius intron-binding protein similar to aquarius
Ec32 orthologEc-23_001250.1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.8268788-CDS-P-wetherbeei_contig7384:254..3561683186977.8268788-CDS-P-wetherbeei_contig7384:254..356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7384 255..356 -
1683186977.8365211-CDS-P-wetherbeei_contig7384:745..11411683186977.8365211-CDS-P-wetherbeei_contig7384:745..1141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7384 746..1141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.8460279-UTR-P-wetherbeei_contig7384:1141..12241683186977.8460279-UTR-P-wetherbeei_contig7384:1141..1224Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7384 1142..1224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7384.1.1prot_P-wetherbeei_contig7384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7384 255..1141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7384.1.1

>prot_P-wetherbeei_contig7384.1.1 ID=prot_P-wetherbeei_contig7384.1.1|Name=mRNA_P-wetherbeei_contig7384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MAKGKGPRNATAGGALEGAEPPGEGATANAPAADPNVEAAGAGSANAAEG
AAVTPAGQSGSTPAARGKRHGRGHPAAECGSTPGRSATAPPAVRTVVPTV
RDILQDEITRIAKMYWAPGCTEPTKGQWEPNLVVAIYDKDLKAFAHGGAA
AAVDIAAPDSEAPLRP
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mRNA from alignment at P-wetherbeei_contig7384:255..1224-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7384.1.1 ID=mRNA_P-wetherbeei_contig7384.1.1|Name=mRNA_P-wetherbeei_contig7384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=970bp|location=Sequence derived from alignment at P-wetherbeei_contig7384:255..1224- (Phaeothamnion wetherbeei SAG_119_79)
CCTAAGACGCCTCTGGTGTTTGTCAAAACGAGTGAAAAGTATCCTGAGCG
AGGGAGTTGAGCTGAGGTACTGAACACGGAAGAATGGCAAAAGGCAAAGG
GCCGCGGAATGCGACTGCAGGTGGCGCATTGGAGGGTGCAGAACCACCAG
GAGAGGGTGCTACGGCGAACGCCCCAGCCGCAGATCCGAACGTCGAAGCT
GCCGGCGCAGGCTCTGCCAATGCGGCCGAGGGGGCAGCGGTCACGCCCGC
CGGCCAATCTGGCAGCACGCCGGCAGCACGCGGCAAGAGGCATGGCCGCG
GGCACCCAGCAGCTGAATGCGGATCCACGCCGGGACGAAGCGCTACCGCC
CCTCCTGCGGTGCGCACCGTCGTCCCGACCGTCCGTGATATCTTGCAAGA
CGAGATCACCCGCATCGCCAAGATGTACTGGGCTCCCGGATGCACGGAGC
CGACAAAGGGGCAATGGGAGCCTAACTTGGTTAGTTTTTCCTTTAGTGCT
TCGAGGCTTCTCTCGTGCTGCTCTCTTCTTAGATTTTACCCTTCGCTTGC
ACGTTTGCGTGTCGACGGGTGCAACTTCCGAAAGTTGATGGCGTGATTCT
CAGGGGCTTCTCGCACACTCACTGTTCACGAGCAAGATTGTGTGTGGTGG
AGCTACATCCTTGTCAACCCTTTCCTACCGGTCCATCCGCGCTTTCAATC
GTGTCCCGCGACGTCTCTCGTATTTCCGGGGTATCAAAGGGTTAGTATTG
ATGCGGTGCTCCTATTCTTCGTGGTTGATACTGCCAGGTCAATTGCTCGC
GTCCCAAATTCTCGTCCCTCTTACAGTCACAACGGTCCTTTTTCCCCGCC
CTTTCCCAACAAAATCAGGTGGTCGCCATATACGACAAGGATTTGAAGGC
ATTTGCACATGGCGGTGCAGCGGCGGCCGTCGACATTGCTGCCCCGGACT
CCGAGGCGCCGCTACGGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7384:255..1224-

>mRNA_P-wetherbeei_contig7384.1.1 ID=mRNA_P-wetherbeei_contig7384.1.1|Name=mRNA_P-wetherbeei_contig7384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig7384:255..1224- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAAGGCAAAGGGCCGCGGAATGCGACTGCAGGTGGCGCATTGGA
GGGTGCAGAACCACCAGGAGAGGGTGCTACGGCGAACGCCCCAGCCGCAG
ATCCGAACGTCGAAGCTGCCGGCGCAGGCTCTGCCAATGCGGCCGAGGGG
GCAGCGGTCACGCCCGCCGGCCAATCTGGCAGCACGCCGGCAGCACGCGG
CAAGAGGCATGGCCGCGGGCACCCAGCAGCTGAATGCGGATCCACGCCGG
GACGAAGCGCTACCGCCCCTCCTGCGGTGCGCACCGTCGTCCCGACCGTC
CGTGATATCTTGCAAGACGAGATCACCCGCATCGCCAAGATGTACTGGGC
TCCCGGATGCACGGAGCCGACAAAGGGGCAATGGGAGCCTAACTTGGTGG
TCGCCATATACGACAAGGATTTGAAGGCATTTGCACATGGCGGTGCAGCG
GCGGCCGTCGACATTGCTGCCCCGGACTCCGAGGCGCCGCTACGGCCG
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