mRNA_P-wetherbeei_contig738.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig738.2.1
Unique NamemRNA_P-wetherbeei_contig738.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A126X2D9_9PHAE (Putative LOV domain-containing protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A126X2D9_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 4.290e-117
Identity = 191/223 (85.65%), Postives = 207/223 (92.83%), Query Frame = 1 
Query: 1087 PIVSGRNMSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAETSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQEDAE 1755
            P   GRNM+EQQ+LDRRERNREHAKRSRVRKKFLLESLQKSVT+LQ+ENEKLRGAIR NLG + AKELLA+ E+SSL+A+ PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFL+LTGY LDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKG+DTSVCL NYRVDG+ FWNQFFIAALRD++G +INYVGVQCKV EDFVRA+QR E  E
Sbjct:   29 PRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRANLGAEEAKELLAQTESSSLIASKPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGAVINYVGVQCKVDEDFVRAVQRTEGEE 251
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: D8LT99_ECTSI (Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepID=D8LT99_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 2.070e-115
Identity = 190/226 (84.07%), Postives = 208/226 (92.04%), Query Frame = 1 
Query: 1087 PIVSGRNMSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAET-SSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQEDAEGG 1761
            P   GRNM+EQQ+LDRRERNREHAKRSRVRKKFLLESLQKSVT+LQ+ENEKLRGAIR NLG + AKELLA+ ET ++L+++ PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFL+LTGY LDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKG+DTSVCL NYRVDG+ FWNQFFIAALRD++G +INYVGVQCKV EDFVRA+QR E  E G
Sbjct:   29 PRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEAKELLAETETPTTLISSRPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDG 254
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A126WZN1_9PHAE (Putative LOV domain-containing protein n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A126WZN1_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 2.790e-115
Identity = 190/225 (84.44%), Postives = 205/225 (91.11%), Query Frame = 1 
Query: 1087 PIVSGRNMSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAETSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQEDAEGG 1761
            P   GRNM+EQQ+LDRRERNREHAKRSRVRKKFLLESLQKSVTALQ+ENEKLRGAIR NL  + AKELL + ETS+L+A+ PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFL+LTGY LDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKG+DTSVCL NYRVDG  FWNQFFIAALRD++G +INYVGVQCKV EDFVRA Q++E  E G
Sbjct:   49 PRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRSNLSAEEAKELLEQTETSNLIASNPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGVMFWNQFFIAALRDSEGAVINYVGVQCKVDEDFVRASQKKEGDEDG 273
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A126X307_SARHM (Putative LOV domain-containing protein n=1 Tax=Sargassum hemiphyllum TaxID=127544 RepID=A0A126X307_SARHM)

HSP 1 Score: 374 bits (961), Expect = 1.100e-113
Identity = 188/221 (85.07%), Postives = 207/221 (93.67%), Query Frame = 1 
Query: 1087 PIVSGRNMSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAETSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQED 1749
            P   GRNM+EQQ+LDRRERNREHAKRSRVRKKFLLESLQKSVTALQ+ENEKLRGAIR NLG + AKELL + ETSSL++++PG+ATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFL+LTGY LDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKG+DTSVCL NYRVDG+ FWNQFFIAALRD++G +INYVGVQCKV EDFVRA Q++E+
Sbjct:  200 PRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRSNLGPEEAKELLTQTETSSLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAAQKREE 420
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A126X1C8_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A126X1C8_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 5.050e-112
Identity = 182/214 (85.05%), Postives = 202/214 (94.39%), Query Frame = 1 
Query: 1108 MSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAETSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQED 1749
            M+E+Q+LDRRERNREHAKRSRVRKKFLLESLQKSVTALQ+ENEKLRGAIR NLG + AKELL + ETSSL++++PG+ATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFL+LTGY LDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKG+D SVCL NYRVDG+ FWNQFFIAALRD++G +INYVGVQCKV EDFVRA Q++E+
Sbjct:    1 MTEKQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTETSSLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDASVCLRNYRVDGAMFWNQFFIAALRDSEGIVINYVGVQCKVDEDFVRAAQKREE 214
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A835YVH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH1_9STRA)

HSP 1 Score: 348 bits (892), Expect = 1.230e-104
Identity = 180/218 (82.57%), Postives = 199/218 (91.28%), Query Frame = 1 
Query: 1102 RNMSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAETSS---LLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQE 1746
            R+MSEQQKL+RRERNREHAKRSRVRKKFLLESLQKSV+ALQ+ENE+LRGAIR+N  +  A+ELL + E      +LAATPG+A +VLDDPDYSLV+ALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGY LDQVLGRNCRFLQGPDTDPKAVE+IRKAIE G DTSVCLLNYR DG+ FWNQFFIA+LRDADGKIINYVGVQCKVSE+FV A+Q+QE
Sbjct:  169 RSMSEQQKLERRERNREHAKRSRVRKKFLLESLQKSVSALQEENERLRGAIRENCTD--AQELLTRTEAGGGGGVLAATPGEANRVLDDPDYSLVRALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYTLDQVLGRNCRFLQGPDTDPKAVERIRKAIESGCDTSVCLLNYRSDGTQFWNQFFIASLRDADGKIINYVGVQCKVSEEFVTAVQKQE 384
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A7S2GCF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCF2_9STRA)

HSP 1 Score: 334 bits (857), Expect = 5.200e-102
Identity = 169/224 (75.45%), Postives = 194/224 (86.61%), Query Frame = 1 
Query: 1096 SGRNMSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAETSS--LLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQEDAEGG 1761
            S RNM+E+QK++RRERNREHAKRSRVRKKFLLESLQ+SV ALQ ENEKLR AI+++L    A  LL++  T +  L+A+ P DAT++LDDPDYSLVKALQTAQQNFVITDP+LPDNPIVFASQGFL LTGY LDQVLGRNCRFLQGP TDPKAVEKIR A+  G+D SVCLLNYR+DGSTFWNQFF+A LRD+DG+++NYVGVQCKVSEDF RAI + E AE G
Sbjct:   12 STRNMTEKQKVERRERNREHAKRSRVRKKFLLESLQQSVNALQQENEKLRSAIKEHLNPQQADSLLSQCSTKAGPLIASDPNDATRILDDPDYSLVKALQTAQQNFVITDPSLPDNPIVFASQGFLSLTGYQLDQVLGRNCRFLQGPQTDPKAVEKIRNAVADGIDASVCLLNYRIDGSTFWNQFFVAPLRDSDGQVVNYVGVQCKVSEDFARAIAQSEGAEKG 235
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: X2CR90_SACJA (Aureochrome2 (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=X2CR90_SACJA)

HSP 1 Score: 323 bits (829), Expect = 1.060e-98
Identity = 167/187 (89.30%), Postives = 177/187 (94.65%), Query Frame = 1 
Query: 1108 MSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAETSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDA 1668
            M+EQQ+LDRRERNREHAKRSRVRKKFLLESLQKSVTALQ+ENEKLRGAIR NLG D AKELLA+ E+SSL+A+ PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFL+LTGY LDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKG+DTSVCL NYRVDG+ FWNQFFIAAL  A
Sbjct:    1 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKELLAQTESSSLIASNPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALLHA 187
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A7S2WVR6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVR6_9STRA)

HSP 1 Score: 316 bits (810), Expect = 3.340e-95
Identity = 160/210 (76.19%), Postives = 184/210 (87.62%), Query Frame = 1 
Query: 1126 LDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELLAKAE-TSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQEDA 1752
            + RRERNREHAKRSRVRKKFLLESLQ+SV ALQ EN+KLR AI +++G +A + L A  E T SL+AA P DAT++LDDPDYSLVKALQTAQQNFVITDP+LPDNPIVFAS GFL LTGY LDQVLGRNCRFLQGP+TDP+AV KIRKAI++G DTSVCLLNYR+DGSTFWNQFF+A LRD++G ++NYVGVQCKVS+DF RAI + E A
Sbjct:   43 VXRRERNREHAKRSRVRKKFLLESLQQSVGALQAENDKLRAAITEHMGSEADELLAACTEGTGSLIAANPNDATRILDDPDYSLVKALQTAQQNFVITDPSLPDNPIVFASSGFLTLTGYSLDQVLGRNCRFLQGPETDPRAVHKIRKAIQEGFDTSVCLLNYRIDGSTFWNQFFVAPLRDSEGNVVNYVGVQCKVSDDFARAIAQSEAA 252
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BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Match: A0A7S1CUW3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CUW3_CYCTE)

HSP 1 Score: 320 bits (821), Expect = 6.650e-95
Identity = 164/226 (72.57%), Postives = 194/226 (85.84%), Query Frame = 1 
Query: 1096 SGRNMSEQQKLDRRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAAKELL----AKAETSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGVDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRAIQRQEDAEGG 1761
            S R MSEQQK++RRERNREHAKRSR+RKKFLLESLQ+SVT L++ENEKLR +IR +LG   A ELL    +KA  + L+A +P DA KVLDDPD+S +KALQTAQQNFV+TDP+LPDNPIV+A+QGFL+LTGY LDQVLGRNCRFLQGP+TDPKAVEKIRK+IE+G D SVCLLNYRVDG+TFWNQFFIAALRDA G I NYVGVQCKVS+ +   + ++++AE G
Sbjct:  155 SERKMSEQQKVERRERNREHAKRSRIRKKFLLESLQQSVTLLKEENEKLRQSIRSHLGAAEADELLGKSLSKAGEAGLIANSPVDANKVLDDPDFSFIKALQTAQQNFVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKAVEKIRKSIEEGTDMSVCLLNYRVDGTTFWNQFFIAALRDASGNITNYVGVQCKVSDQYAANVCKKQEAEEG 380
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig738.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A126X2D9_9PHAE4.290e-11785.65Putative LOV domain-containing protein n=4 Tax=Scy... [more]
D8LT99_ECTSI2.070e-11584.07Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A126WZN1_9PHAE2.790e-11584.44Putative LOV domain-containing protein n=1 Tax=Dic... [more]
A0A126X307_SARHM1.100e-11385.07Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126X1C8_9PHAE5.050e-11285.05Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A835YVH1_9STRA1.230e-10482.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GCF2_9STRA5.200e-10275.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
X2CR90_SACJA1.060e-9889.30Aureochrome2 (Fragment) n=1 Tax=Saccharina japonic... [more]
A0A7S2WVR6_9STRA3.340e-9576.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1CUW3_CYCTE6.650e-9572.57Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig738contigP-wetherbeei_contig738:2008..7599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT99
PFAMsPAS_9
Model size4147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.42e-124
EggNOG OGs2BEDG@1|root,2S14J@2759|Eukaryota
Ec32 ortholog descriptionaureochrome 3
Ec32 orthologEc-12_005760.1
DescriptionPAS domain
Cds size1422
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig738.2.1prot_P-wetherbeei_contig738.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig738 2389..4898 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.4817958-UTR-P-wetherbeei_contig738:2007..23881683186977.4817958-UTR-P-wetherbeei_contig738:2007..2388Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig738 2008..2388 +
1683186977.5346088-UTR-P-wetherbeei_contig738:4898..59911683186977.5346088-UTR-P-wetherbeei_contig738:4898..5991Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig738 4899..5991 +
1683186977.544288-UTR-P-wetherbeei_contig738:6185..63131683186977.544288-UTR-P-wetherbeei_contig738:6185..6313Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig738 6186..6313 +
1683186977.5537894-UTR-P-wetherbeei_contig738:6476..75991683186977.5537894-UTR-P-wetherbeei_contig738:6476..7599Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig738 6477..7599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.492503-CDS-P-wetherbeei_contig738:2388..32311683186977.492503-CDS-P-wetherbeei_contig738:2388..3231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig738 2389..3231 +
1683186977.5026839-CDS-P-wetherbeei_contig738:3664..39641683186977.5026839-CDS-P-wetherbeei_contig738:3664..3964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig738 3665..3964 +
1683186977.5131917-CDS-P-wetherbeei_contig738:4281..44641683186977.5131917-CDS-P-wetherbeei_contig738:4281..4464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig738 4282..4464 +
1683186977.5237083-CDS-P-wetherbeei_contig738:4802..48981683186977.5237083-CDS-P-wetherbeei_contig738:4802..4898Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig738 4803..4898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig738.2.1

>prot_P-wetherbeei_contig738.2.1 ID=prot_P-wetherbeei_contig738.2.1|Name=mRNA_P-wetherbeei_contig738.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=474bp
MDRIPLPSAPVFGVAGGLEAQLNANKYLNLDEIFVDCFMENDSDLVSQMG
TPGGGGGGGSSGGASSGAGAAGVGAGGNASSIGGNSGGPMGMGPSGLGMG
PGGLNLAQYSGPGMLPGMAMQQLLHGPLPPGMGVNPSMPGMPPPPQLGPP
MGMHPGMPNHYMHQTPPVGVVGAPNCAPLSAPAPAATAGTTRPAPAPAAG
GSEDDGKARRVKRPRTTAGSAAGAAGAAAGMASMGPIVSGRNMSEQQKLD
RRERNREHAKRSRVRKKFLLESLQKSVTALQDENEKLRGAIRDNLGEDAA
KELLAKAETSSLLAATPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLP
DNPIVFASQGFLDLTGYVLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKG
VDTSVCLLNYRVDGSTFWNQFFIAALRDADGKIINYVGVQCKVSEDFVRA
IQRQEDAEGGGGEDEDEEDEEDD*
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mRNA from alignment at P-wetherbeei_contig738:2008..7599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig738.2.1 ID=mRNA_P-wetherbeei_contig738.2.1|Name=mRNA_P-wetherbeei_contig738.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=5592bp|location=Sequence derived from alignment at P-wetherbeei_contig738:2008..7599+ (Phaeothamnion wetherbeei SAG_119_79)
AGTCGAGCTACTGCCGTAAAAGACCGGCTGGCATCGTCACTGCTTCGTCG
GCTGGCCCAGTTGCCGTTCCAGATATTTTCGTTGTCCAAGAAGTTTGGTG
CAGGGACGGCTGAGGGCCCTCGAGGAGGTGCCGCTACGGCACGCTGCTGA
TCTGCATCGAGTTGGCGAACCGATGAAAGCTCACGTCTCAGTGTACTCCC
GTTCTTTTGCTTCCAAGAAGTAGTAAGAGGTCGAGGTGTCCGTGGCGTTC
ACCGCCCCACGCCTCGTCCCGCCGACGGTGCGTAGGAAGGCGCTAGCGCA
CTCCCCGCCTGCCGCTTGCTGCAACACCGGGAAAATCGGGAGCTGAAGTG
TTGTTATTTTAGTCGCCGCCCATCTGGAGCCATGGACCGCATCCCCCTGC
CATCGGCGCCCGTTTTCGGGGTGGCTGGCGGGCTGGAGGCGCAGCTAAAC
GCGAACAAATATCTCAACCTCGATGAAATTTTCGTGGACTGCTTCATGGA
AAATGACAGCGATCTTGTCAGCCAGATGGGGACACCTGGCGGCGGCGGTG
GCGGCGGCAGCAGCGGTGGAGCGAGCAGCGGTGCCGGCGCTGCCGGCGTC
GGCGCCGGCGGCAACGCGAGCAGCATCGGCGGGAACAGCGGCGGCCCCAT
GGGGATGGGGCCCAGCGGCCTCGGGATGGGCCCTGGAGGGCTCAATCTGG
CTCAGTACAGCGGGCCGGGAATGCTCCCTGGAATGGCCATGCAGCAGCTT
TTGCACGGGCCGCTGCCGCCGGGGATGGGGGTCAATCCCTCCATGCCCGG
AATGCCGCCGCCCCCGCAACTCGGGCCGCCGATGGGAATGCATCCTGGCA
TGCCAAATCATTACATGCACCAGACGCCGCCAGTAGGGGTAGTGGGGGCG
CCGAACTGCGCTCCGCTCTCCGCGCCGGCCCCCGCCGCCACTGCCGGGAC
GACGCGGCCGGCACCGGCACCCGCGGCGGGCGGCAGCGAAGACGACGGCA
AAGCGCGGCGGGTCAAGAGACCACGGACGACGGCCGGGTCGGCGGCGGGG
GCGGCGGGGGCGGCGGCGGGGATGGCGTCGATGGGCCCGATCGTGAGCGG
CCGCAACATGTCGGAGCAGCAGAAGCTGGACCGCCGGGAGCGGAACCGGG
AGCACGCGAAGCGGTCGCGGGTGCGAAAGAAGTTTTTGCTCGAGTCGCTA
CAGAAGAGCGTCACAGCGCTGCAGGTGAGAGCCGAGATTATGGAGGGAAA
GGTGGTGTATGTGCGTTCAGTCGTCTGCAGGTGAGGCATTTCCAAGGGCA
GCTTACCTTTTTGTGTGTCTCTCTCTTCCCTTCCCAGCAGTTTTCCATGC
CATGCCGGACGAGCTAGATGGGCCTCGTGGAATACTTTGCGTTATCGGAA
TGGGCTGGCGTCTTGGATAGGGCATTATCACACAGCCTCTGGCCGCCTTG
CTTTTTCCCTCGGTCTTTTCCCCCGACCACCCTCGGGCTGGGCTTGCGTC
TGTTTAGGCTTGGAGTATTTTGCGTTCCATCATTTCCCTCCGCAGGGCCC
TTCCGGAACCGGCCGGAACCGTTGTAGAACCGCATCAGAACCTGACTGAA
ACCACTGCACCTGTCCCACTTCTCTTGGTGCCGCTCCCTTTTTGGGGCAA
AAACCAGGACGAAAACGAGAAGCTGCGGGGCGCGATCCGCGACAACCTTG
GAGAGGACGCGGCGAAGGAGCTGCTTGCGAAGGCGGAAACATCGTCGCTG
CTGGCGGCGACGCCCGGCGACGCCACCAAAGTGCTCGACGACCCAGACTA
CTCGCTCGTCAAGGCGCTGCAGACGGCGCAGCAGAACTTCGTCATCACGG
ATCCGACGCTGCCAGACAACCCCATTGTGTTTGCTAGCCAGGGCTTTTTG
GACCTTACAGGTTACGTGCTGGACCAGGTGCTTGGACGCAACTGCCGCTT
CCTCCAGGTACGTCTGGTGTTGCCTGGTAGTCTAGCAGTCCTTTTGACTG
TCAATCAACCGATGGGCCGGCGGAGGAAGAGGAGTGGGAAAGGCGAAAGC
AGCGGCGGCGGCGGGAGGGGCTGCGGTGGCGGCGACGGCGGCGACGACGG
CGCGCTTGCGTTGGTACGGTATCGCTGTTGGCCGCGGGTTCTCGTTTTGC
TGCGTGCCGACGCTGCATCGCTTGGCAATGGGCTATGTCGCGCACTGCTG
GTTACCTCAACTATTTCGTTTTCCGCCTTCCGCTCTTTCTCCTCCTGCCC
GCCTGCCTGTCTGTCTTGCACCAGGGTCCAGACACGGACCCGAAGGCGGT
GGAGAAGATCCGCAAGGCGATCGAGAAGGGCGTCGACACGTCCGTGTGCC
TTCTCAACTACCGTGTCGACGGCTCCACCTTCTGGAACCAATTCTTCATC
GCCGCGCTCAGAGACGCCGATGGAAAGATCATCAACTACGTGGGTGTGCA
GTGCAAGGTGAGAGACTGGGCGGGTTTCCGGCGGCGGCAAGTGAAGGAGG
GGACATCAGAAAGACGGTGGCTGCACAAGCAGTGCCGGCAGTGGTCGCCT
TGGCAGCGGTTGTCTTGGCGGTGGCCGTGCAGGCTGCGGCAGCACGATGA
TGGCGGCGGCGGCTGGGGAGGTGCACGAAGAAGAAGCAAGTTGGTGTTTT
GGGAATGCCGTGGTTGCACCTTGCGTCGGTCGCATAGCGCGTTCTTTGCC
ATGGCAAAGCTTGTTTCCGTCTGATCAACCTGAAAACCCGCCTGAAAACC
CGCCCTTTCTCTCTTTCTGCCTTCGTCCGCCCGCACCCACGCCAGGTGTC
GGAGGACTTCGTGAGAGCCATTCAGCGGCAAGAAGATGCAGAAGGGGGCG
GTGGCGAGGATGAGGACGAGGAAGACGAGGAAGACGATTAAGGACGGGGG
AGAGGCAACGAGAAAAAGCGGTAGCGCCCGGCGACAAGGGTAAAGGCGGC
GGGTGGGCGGGTGGCGGGTCAATAGGTGCTGGGGGCTTGGCGGCAGCGGC
GAATGGGTAAACCTCACTGTGCCGCAACGTAGTGTTGGATGAATAATGCC
GGGCGTTCCAGCGCCCCGGCCGGCGGGGGGCAGTGCCGGCACTTGCTGCG
CGAGCCGGCAATGGCGCCGCTGACATTTTTAGTGTGGGACCGGCGTGACA
GTGTGGAAAGAAGCGTGAAGATGCCGTGACGTGCCGCGGCATGGGGGGGG
AGGCGGTGGGGCCTCCTAAGTAGAGAAACGCGATTTGCACCACATGCAAT
ACATTTTCTGCTAACGGTTGGGTGATGACAGTGGCTGCCGCAGTGGCGGC
GGCCGGGATTGCTTCGGGTGGCAGCGAGCGGATGGTATACCTTAAGACAA
TTTGCCATTCCTTCTCCCTTTGGCCTGGAGGAGTCAGCGGCGGCGGCTGT
ACCATGGCAATAAAAGCTGCCAGTGTCGACGTCGACGGCGCGAGTGGCAG
TTACACTTTCCAGTGCCGACGGCGGCGGTGGGCGATGGAATGTGGCCGAT
GTGGCGGTGCGTTTTTGTGATGGACAGAACCGGACGCAAACCGGACCATC
CTCAAACTGGCAAAAACATGTATTGCGCAGGCCGATTGACGAGTGAATAT
GCAAGATGCGTGGCGAGGAGAGGAAGCATCGCGGTGTTGCGCCCTGTTCT
GAGCGGAAATACTCACGTGCGCAGAACTGACTCGTTGACAAATGCTTGGA
TTGAACGAAACTAACCATCTCCTGCTTTCCCGCCTTGCCTACGCCCAGCG
TCATTGGCTTGGCGTCGGCGCTGCCACAGTGGCTCTCGGTGCTGCTGCTT
TTGCAGCTGCAGCGAGCAAACTCCTTTGTCAACCTGTAGCAGAGCTTGAA
CAACAGCGCATCGCCGTCGTTACCGGGGCAGGAGGATGCCTCGGAGAAGC
CTGCGTGCGAATGCTCATCGCAGAAGGATACCGCGTCGCCATGATGGACG
TCTCCGACGCGGGAATGCAACGCTTGCTACAAGAGTGAGTGAGTTTCTCT
GCAAGGAGTTGGTCAACCTTCGGCCTTTTATTGGTCTTGAGGAGGGCAGC
GATTGCTGAAATCTGTGCCTTATCTTTCCGCGCTTTGCACTCGATCAGGA
AGGACACGATTCCTACATCGTCTTCTTTTTCTTACATGGTCTTCTATGCG
ATCAAACGCTGCTCTGCGATCGTTGCAGGTTCGGGCGCGATCACGTGATG
GTACTCAAGGTAGACTTGACGGACGAAACCGCCGTCCTCACCGCTTGCGA
CACCCTCGAGAGCCGCTGGAAAGACTGCGCCGTTTCGGTGCTCGTAAACA
ATGCCGGTGAGTCGCTTGTCGATCCCTGATTGCGCTGCGCTCGTGCGTTA
AAAAAGGAGTCATGGCTGATTCTTTGATGTTTTGAATTTGCGCTTTTGTG
CATTGTGCCTCGCTTACCGTCTCATCCTATCTCCTTCGCCCGTTACGGCC
CGTCACTGCAATTCCCCAGGCATACTCAGCAGCCACAAGTGGGCGGCGAC
GACGCCGGAAGAGTTTGAGCGGGTGATGCGGGCCAACGCACTGTCGGCAT
TTATCGTGACGCGACGCCTCCTGCCCGGAATGCGGCGCGCCGGCTACGGA
CGCATTATCTTCACGACCAGCATGGCCGCCAAGGTGCGCGGGTCTTAGCT
CTTGCTATGTGAATTTGATTGGGCTTGCCTGCTGCTGTAATTTTTGGCTG
GCACGCGTCTGTTGTGTGCTGTTCACTTTGAACCCGTTGCACACTTTTTT
ACCGTCGTTTCTAGCGGCTCACTGATTGTACACGCAGTGGATATGGGACC
GTTTCTTTGGTGAAAAAATGAAGCAAGAGCTATTGCCTCCACTTAGCAAG
TCTGCCGCTGTGAGAAGAGTGAATGTTTGGACTGAGCTGACAGGCCATCA
GTTGAGTAGCGGAGGTTTGTAGTGCCTCGTGAAGGTAGATGCAGAGATTA
TTCCTTTTCTTCTCGCGTCCGCCCCGCCTGCAACCACAGGTCGGCGGTGT
GACTGCGGGCACTTCCTACGTGGCCTCGAAGGGCGCCCTCTCCTCCATGG
TCTTCGCGCTCGCCCGTGAGACGGCCGCCGACGGCGTCACCGTCAACGGC
ATCGCGCCGGCGTACGTGCGGACCCCCATGGTGACGGAGCAGCTGACGGA
GGCACAGCGGCGGGCCGTTGTCATGCAGATCCCAGTGCGGCGGTTCTGCG
AGCCGGAGGAGTTCGCGCACGTGGTGCGTTTCCTGGTGCACCCGCTGGCC
GGGTTTGTCACTGGGGAAATTGTGGACCAGAACGGCGGGATGCACATGGA
TTAGCGGAGGAACATAGACGGAAGGAAGAAGGGCGCCGCCTCTCAAAAGA
ATGCCGACGGCAACGCCGATGGTGAGCGCTTTGGAATTACTCCTGCTGAA
AAGCGCGGCGTCCGTTATCGAAAGGAGAAAGGGGCTGAAGCTCTAGGCTT
TTTAAGAGCCGTACACAATCAAAACTAACGGTAGCCGTCCGGGGTGTGAA
ATACTTAGAGAAGACTTGCAGGGACATGGCGACATTGCGCGCACCGTGTG
ACACTATAGGCACAGAAATAAATGAAGTCACTCCATAAACTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig738:2008..7599+

>mRNA_P-wetherbeei_contig738.2.1 ID=mRNA_P-wetherbeei_contig738.2.1|Name=mRNA_P-wetherbeei_contig738.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1422bp|location=Sequence derived from alignment at P-wetherbeei_contig738:2008..7599+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGCATCCCCCTGCCATCGGCGCCCGTTTTCGGGGTGGCTGGCGG
GCTGGAGGCGCAGCTAAACGCGAACAAATATCTCAACCTCGATGAAATTT
TCGTGGACTGCTTCATGGAAAATGACAGCGATCTTGTCAGCCAGATGGGG
ACACCTGGCGGCGGCGGTGGCGGCGGCAGCAGCGGTGGAGCGAGCAGCGG
TGCCGGCGCTGCCGGCGTCGGCGCCGGCGGCAACGCGAGCAGCATCGGCG
GGAACAGCGGCGGCCCCATGGGGATGGGGCCCAGCGGCCTCGGGATGGGC
CCTGGAGGGCTCAATCTGGCTCAGTACAGCGGGCCGGGAATGCTCCCTGG
AATGGCCATGCAGCAGCTTTTGCACGGGCCGCTGCCGCCGGGGATGGGGG
TCAATCCCTCCATGCCCGGAATGCCGCCGCCCCCGCAACTCGGGCCGCCG
ATGGGAATGCATCCTGGCATGCCAAATCATTACATGCACCAGACGCCGCC
AGTAGGGGTAGTGGGGGCGCCGAACTGCGCTCCGCTCTCCGCGCCGGCCC
CCGCCGCCACTGCCGGGACGACGCGGCCGGCACCGGCACCCGCGGCGGGC
GGCAGCGAAGACGACGGCAAAGCGCGGCGGGTCAAGAGACCACGGACGAC
GGCCGGGTCGGCGGCGGGGGCGGCGGGGGCGGCGGCGGGGATGGCGTCGA
TGGGCCCGATCGTGAGCGGCCGCAACATGTCGGAGCAGCAGAAGCTGGAC
CGCCGGGAGCGGAACCGGGAGCACGCGAAGCGGTCGCGGGTGCGAAAGAA
GTTTTTGCTCGAGTCGCTACAGAAGAGCGTCACAGCGCTGCAGGACGAAA
ACGAGAAGCTGCGGGGCGCGATCCGCGACAACCTTGGAGAGGACGCGGCG
AAGGAGCTGCTTGCGAAGGCGGAAACATCGTCGCTGCTGGCGGCGACGCC
CGGCGACGCCACCAAAGTGCTCGACGACCCAGACTACTCGCTCGTCAAGG
CGCTGCAGACGGCGCAGCAGAACTTCGTCATCACGGATCCGACGCTGCCA
GACAACCCCATTGTGTTTGCTAGCCAGGGCTTTTTGGACCTTACAGGTTA
CGTGCTGGACCAGGTGCTTGGACGCAACTGCCGCTTCCTCCAGGGTCCAG
ACACGGACCCGAAGGCGGTGGAGAAGATCCGCAAGGCGATCGAGAAGGGC
GTCGACACGTCCGTGTGCCTTCTCAACTACCGTGTCGACGGCTCCACCTT
CTGGAACCAATTCTTCATCGCCGCGCTCAGAGACGCCGATGGAAAGATCA
TCAACTACGTGGGTGTGCAGTGCAAGGTGTCGGAGGACTTCGTGAGAGCC
ATTCAGCGGCAAGAAGATGCAGAAGGGGGCGGTGGCGAGGATGAGGACGA
GGAAGACGAGGAAGACGATTAA
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