mRNA_P-wetherbeei_contig7374.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7374.3.1
Unique NamemRNA_P-wetherbeei_contig7374.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7374.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7374contigP-wetherbeei_contig7374:2121..3089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1173021.ALWA01000028_gene1990
PFAMsNB-ARC,Pentapeptide,TPR_10,TPR_12,TPR_7,TPR_8
Model size969
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.5e-06
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G1QI@1117|Cyanobacteria
DescriptionPFAM Tetratricopeptide repeat
Cds size969
COG categoryF
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.3310797-CDS-P-wetherbeei_contig7374:2120..30891683186977.3310797-CDS-P-wetherbeei_contig7374:2120..3089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7374 2121..3089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7374.3.1prot_P-wetherbeei_contig7374.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7374 2121..3089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7374.3.1

>prot_P-wetherbeei_contig7374.3.1 ID=prot_P-wetherbeei_contig7374.3.1|Name=mRNA_P-wetherbeei_contig7374.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MALVSGLCRLSRALRWAGEGTAAEAALMDALHVLEGGGCGRWEHAAVLAA
AGVALAARGRSEEAEGCFRRAQAFTAHPVEMNGGSGAGGREKCGGDNGSG
DRDQHARRPFSAEGWSFAAAAAAASLTPALQEAGGDSGSRSGGDSGSRSG
GECDLRQLVADVCAAYGTLLRRRGDPEAALALHKRALRADERRLGPAHPY
CAAERVNCGDLCAELPGRGREAQEHYRRATDILAAAAGAGRMHAQLARAL
NNRGLLLCALGMAEAAEGVYRRCLVTKEGMYGAGHPTVAVTLNNLACCML
QLGKLAWAEPLLLRALEIRRGAL
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mRNA from alignment at P-wetherbeei_contig7374:2121..3089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7374.3.1 ID=mRNA_P-wetherbeei_contig7374.3.1|Name=mRNA_P-wetherbeei_contig7374.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig7374:2121..3089+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACTTGTGTCGGGGCTGTGCCGGCTCAGCAGGGCGCTGCGGTGGGC
GGGAGAGGGCACGGCCGCAGAAGCCGCGCTGATGGACGCTCTTCACGTGC
TGGAGGGCGGCGGCTGCGGTCGCTGGGAGCATGCTGCGGTGCTGGCAGCA
GCGGGAGTGGCTCTCGCTGCGCGCGGAAGGTCGGAAGAGGCCGAAGGGTG
CTTTCGCCGTGCCCAGGCGTTCACCGCGCACCCTGTCGAGATGAATGGTG
GTAGCGGCGCTGGCGGGAGAGAGAAATGCGGCGGCGATAATGGCAGTGGG
GACAGAGACCAACATGCAAGGAGGCCTTTCTCCGCAGAGGGCTGGTCCTT
TGCGGCCGCCGCCGCTGCCGCCAGCCTCACGCCGGCACTACAAGAGGCCG
GCGGCGACAGCGGCAGCCGCAGCGGCGGCGACAGCGGCAGCCGCAGCGGC
GGCGAGTGCGACCTCCGTCAGCTGGTCGCCGACGTCTGTGCAGCCTACGG
GACGCTGCTGCGCCGCCGCGGCGATCCGGAGGCGGCGCTGGCGCTACACA
AGCGGGCTCTGCGGGCAGATGAGCGGCGGCTGGGGCCCGCCCACCCGTAC
TGCGCCGCCGAGCGGGTGAACTGCGGCGACCTCTGCGCGGAGCTGCCCGG
ACGTGGCCGGGAGGCGCAAGAGCACTACCGAAGGGCGACGGACATCCTGG
CAGCGGCCGCCGGTGCTGGCCGGATGCACGCGCAGCTGGCGCGCGCGCTC
AATAACCGCGGGCTGCTGCTGTGCGCGCTGGGCATGGCCGAGGCGGCAGA
AGGCGTCTACCGGCGGTGCCTGGTCACCAAAGAAGGCATGTACGGCGCTG
GGCACCCGACGGTGGCGGTGACGCTTAACAACCTGGCCTGCTGCATGCTG
CAGCTGGGCAAGCTCGCCTGGGCCGAGCCGCTGCTACTGCGGGCCCTCGA
GATCCGTCGGGGTGCGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7374:2121..3089+

>mRNA_P-wetherbeei_contig7374.3.1 ID=mRNA_P-wetherbeei_contig7374.3.1|Name=mRNA_P-wetherbeei_contig7374.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig7374:2121..3089+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACTTGTGTCGGGGCTGTGCCGGCTCAGCAGGGCGCTGCGGTGGGC
GGGAGAGGGCACGGCCGCAGAAGCCGCGCTGATGGACGCTCTTCACGTGC
TGGAGGGCGGCGGCTGCGGTCGCTGGGAGCATGCTGCGGTGCTGGCAGCA
GCGGGAGTGGCTCTCGCTGCGCGCGGAAGGTCGGAAGAGGCCGAAGGGTG
CTTTCGCCGTGCCCAGGCGTTCACCGCGCACCCTGTCGAGATGAATGGTG
GTAGCGGCGCTGGCGGGAGAGAGAAATGCGGCGGCGATAATGGCAGTGGG
GACAGAGACCAACATGCAAGGAGGCCTTTCTCCGCAGAGGGCTGGTCCTT
TGCGGCCGCCGCCGCTGCCGCCAGCCTCACGCCGGCACTACAAGAGGCCG
GCGGCGACAGCGGCAGCCGCAGCGGCGGCGACAGCGGCAGCCGCAGCGGC
GGCGAGTGCGACCTCCGTCAGCTGGTCGCCGACGTCTGTGCAGCCTACGG
GACGCTGCTGCGCCGCCGCGGCGATCCGGAGGCGGCGCTGGCGCTACACA
AGCGGGCTCTGCGGGCAGATGAGCGGCGGCTGGGGCCCGCCCACCCGTAC
TGCGCCGCCGAGCGGGTGAACTGCGGCGACCTCTGCGCGGAGCTGCCCGG
ACGTGGCCGGGAGGCGCAAGAGCACTACCGAAGGGCGACGGACATCCTGG
CAGCGGCCGCCGGTGCTGGCCGGATGCACGCGCAGCTGGCGCGCGCGCTC
AATAACCGCGGGCTGCTGCTGTGCGCGCTGGGCATGGCCGAGGCGGCAGA
AGGCGTCTACCGGCGGTGCCTGGTCACCAAAGAAGGCATGTACGGCGCTG
GGCACCCGACGGTGGCGGTGACGCTTAACAACCTGGCCTGCTGCATGCTG
CAGCTGGGCAAGCTCGCCTGGGCCGAGCCGCTGCTACTGCGGGCCCTCGA
GATCCGTCGGGGTGCGCTA
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