mRNA_P-wetherbeei_contig736.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig736.1.1
Unique NamemRNA_P-wetherbeei_contig736.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A835YY50_9STRA (UDP-glucose 4-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY50_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.240e-49
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            K +LV GGAGYIGSHTAL+LL  G+DVVVLD+ +NSS ESL RV K+  CG ERL++ K +LCD+ AL   L Q PPF +CIHFAGLKAV ES+ EPL+Y+ NN++STLNLL+EL    CRK VFS
Sbjct:   12 KVVLVCGGAGYIGSHTALVLLEAGFDVVVLDSFVNSSPESLERVLKITNCGPERLKWHKLDLCDQAALHEILLQYPPFDSCIHFAGLKAVNESLHEPLLYYHNNIVSTLNLLKELDERTCRKLVFS 137
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: M1VE42_CYAM1 (UDP-glucose 4-epimerase n=2 Tax=cellular organisms TaxID=131567 RepID=M1VE42_CYAM1)

HSP 1 Score: 161 bits (407), Expect = 4.860e-46
Identity = 82/126 (65.08%), Postives = 95/126 (75.40%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            K ILV GGAGYIGSHT + LL  GYDVVVLDNL NSSEE+L RVR+L G  E+RL+F   +L D  AL + +A+  P  ACIHFAGLKAVGESV +PL Y+ NNLI TLNLL+ L R  CR+FVFS
Sbjct:    5 KRILVTGGAGYIGSHTVVELLESGYDVVVLDNLSNSSEEALRRVRELTGASEQRLQFQAVDLTDGVALDAAVAKSAPISACIHFAGLKAVGESVEQPLRYYRNNLIGTLNLLQSLNRHGCRRFVFS 130
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A7S3HHD6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHD6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.730e-43
Identity = 69/126 (54.76%), Postives = 92/126 (73.02%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            K +LVAGGAGYIG+HT L LL +GYD+ V+DNLIN+S E ++RV+ + G  + R+R F  +LCD+DAL       P F +CIHFAGLKAVGESV++P++Y+ENN+  TLNL+  L +  C   VFS
Sbjct:   31 KNVLVAGGAGYIGTHTVLTLLENGYDITVVDNLINASNEGINRVKAIVGVDDSRVRIFNVDLCDKDALEKVFTDSPQFASCIHFAGLKAVGESVQKPILYYENNIGGTLNLMNLLEKYGCNSIVFS 156
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A482S7A3_9ARCH (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7A3_9ARCH)

HSP 1 Score: 145 bits (366), Expect = 2.400e-42
Identity = 67/126 (53.17%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            K ILV GG+GYIG HT + L+  GY+V V+DNL+NSS E L RV ++ GC  +++ FF+ +LCD+ AL     + P F ACIHFA LKAVGESV +PL+Y+ENNL+ST+N+L  + +  C  F+FS
Sbjct:   11 KNILVTGGSGYIGVHTIVSLVEAGYNVTVVDNLVNSSPEGLRRVPEITGCSPDQITFFQVDLCDKSALEEVFQKSPKFGACIHFAALKAVGESVAKPLLYYENNLLSTVNVLNLMEKYGCHTFLFS 136
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A2K1K8L9_PHYPA (UDP-glucose 4-epimerase n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K8L9_PHYPA)

HSP 1 Score: 145 bits (366), Expect = 1.240e-39
Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAG-CGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            ++ILV GGAGYIG+HT L LL +GY V+++DNL NS EE++HRVRKLAG CGE  L+FF+ +LC  D ++    +L  F A IHFAGLKAVGESV +PL Y+ NNL+ST+NL+E + +  C+  VFS
Sbjct:   24 RWILVTGGAGYIGAHTVLQLLVEGYSVLIIDNLDNSCEEAVHRVRKLAGECGEN-LKFFEGDLCKVDDIQKVF-KLYRFEAVIHFAGLKAVGESVSKPLRYYSNNLVSTINLMEVMSKNNCKNLVFS 148
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A7S3KXG9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXG9_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.340e-39
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            + +LV GGAGYIGSHT L LL++ Y+VVV+DNL NSSEESL RVRKL  CGE+RL F   ++ DR  L   L   P   +CIHFAGLKAVGESV +PLMY++ N+  T++LLE L +   + FVFS
Sbjct:   62 RTVLVTGGAGYIGSHTCLELLSENYNVVVVDNLDNSSEESLRRVRKLTSCGEDRLCFRNCDIRDRKGLEKILKDFPDISSCIHFAGLKAVGESVAKPLMYYDCNISGTVHLLELLSKHGVKNFVFS 187
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A7I4CKG6_PHYPA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4CKG6_PHYPA)

HSP 1 Score: 141 bits (356), Expect = 1.770e-39
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCD-RDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            ++ILV GGAGYIG+HT L LL +GY VV++DNL NS EE+LHRVRKLAG   E L+F K +LC   D L+  + +L  F A IHFAGLKAVGESV +PL Y+ NNLIST+NL++ + +  C+  VFS
Sbjct:   24 RWILVTGGAGYIGTHTVLQLLMEGYCVVIIDNLDNSCEEALHRVRKLAGEFGENLKFVKGDLCKVEDVLK--VFKLHRFDAVIHFAGLKAVGESVSKPLRYYSNNLISTINLMDVMSKNNCKNLVFS 148
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A6U8E449_9EUGL (UDP-glucose 4-epimerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8E449_9EUGL)

HSP 1 Score: 142 bits (359), Expect = 7.250e-39
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            K I+V GGAG+IGSHT + L+  GY  +V+D+LINSSEE++HRV+ + G   + + FFK +LCD DAL    A   P HA IHFAGLKAVGESV +P+ Y+ENNL ST NLL+ + +  CR+ VFS
Sbjct:    9 KQIIVTGGAGFIGSHTVVELVEAGYKAIVVDSLINSSEEAIHRVKNITG-KPDMIDFFKVDLCDLDALDKVFANCGPCHAVIHFAGLKAVGESVAKPMSYYENNLTSTFNLLQCMKKYDCRQLVFS 133
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A0A249Y714_9CARY (UDP-glucose 4-epimerase n=2 Tax=Cactaceae TaxID=3593 RepID=A0A249Y714_9CARY)

HSP 1 Score: 141 bits (355), Expect = 2.840e-38
Identity = 74/126 (58.73%), Postives = 88/126 (69.84%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            K ILV GGAGYIGSHT L LL  GY VVV+DNL NSSE +LHRV++LAG     L F K +LCD+ AL    +    F A IHFAGLKAVGESV++PL+Y+ NNLI T+ LLE +    C+  VFS
Sbjct:    3 KNILVTGGAGYIGSHTTLQLLQGGYKVVVVDNLDNSSEIALHRVKQLAGDSGSNLTFHKVDLCDKPALEKVFSSTK-FDAVIHFAGLKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKMLVFS 127
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BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Match: A9SPG4_PHYPA (UDP-glucose 4-epimerase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9SPG4_PHYPA)

HSP 1 Score: 141 bits (356), Expect = 3.380e-38
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:    1 KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGCGEERLRFFKTELCD-RDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMYFENNLISTLNLLEELGRTPCRKFVFS 378
            ++ILV GGAGYIG+HT L LL +GY VV++DNL NS EE+LHRVRKLAG   E L+F K +LC   D L+  + +L  F A IHFAGLKAVGESV +PL Y+ NNLIST+NL++ + +  C+  VFS
Sbjct:   24 RWILVTGGAGYIGTHTVLQLLMEGYCVVIIDNLDNSCEEALHRVRKLAGEFGENLKFVKGDLCKVEDVLK--VFKLHRFDAVIHFAGLKAVGESVSKPLRYYSNNLISTINLMDVMSKNNCKNLVFS 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig736.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YY50_9STRA1.240e-4964.29UDP-glucose 4-epimerase n=1 Tax=Tribonema minus Ta... [more]
M1VE42_CYAM14.860e-4665.08UDP-glucose 4-epimerase n=2 Tax=cellular organisms... [more]
A0A7S3HHD6_9STRA2.730e-4354.76Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482S7A3_9ARCH2.400e-4253.17SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2K1K8L9_PHYPA1.240e-3957.48UDP-glucose 4-epimerase n=4 Tax=Physcomitrium pate... [more]
A0A7S3KXG9_9STRA1.340e-3957.94Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7I4CKG6_PHYPA1.770e-3958.27NAD(P)-bd_dom domain-containing protein n=1 Tax=Ph... [more]
A0A6U8E449_9EUGL7.250e-3955.56UDP-glucose 4-epimerase n=1 Tax=Eutreptiella gymna... [more]
A0A249Y714_9CARY2.840e-3858.73UDP-glucose 4-epimerase n=2 Tax=Cactaceae TaxID=35... [more]
A9SPG4_PHYPA3.380e-3858.27UDP-glucose 4-epimerase n=3 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig736contigP-wetherbeei_contig736:1..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45157.CMA041CT
Preferred nameUGE1
PFAMsGDP_Man_Dehyd
Model size378
Max annot lvl2759|Eukaryota
KEGG rclassRC00289
KEGG koko:K01784
KEGG ReactionR00291,R02984
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00361,M00362,M00632
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0003824,GO:0003978,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0006073,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009555,GO:0009653,GO:0009832,GO:0009888,GO:0009969,GO:0009987,GO:0010015,GO:0010053,GO:0010383,GO:0010410,GO:0010411,GO:0012505,GO:0016020,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0022622,GO:0030154,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048869,GO:0050373,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0090558,GO:0090627,GO:0098791,GO:0099402,GO:1901576,GO:1905392
Exons1
Evalue7.97e-47
EggNOG OGsCOG1087@1|root,KOG1371@2759|Eukaryota
EC5.1.3.2
Descriptionracemase and epimerase activity, acting on carbohydrates and derivatives
Cds size378
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186976.1616216-CDS-P-wetherbeei_contig736:0..3781683186976.1616216-CDS-P-wetherbeei_contig736:0..378Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig736 1..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig736.1.1prot_P-wetherbeei_contig736.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig736 1..378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig736.1.1

>prot_P-wetherbeei_contig736.1.1 ID=prot_P-wetherbeei_contig736.1.1|Name=mRNA_P-wetherbeei_contig736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
KYILVAGGAGYIGSHTALLLLADGYDVVVLDNLINSSEESLHRVRKLAGC
GEERLRFFKTELCDRDALRSTLAQLPPFHACIHFAGLKAVGESVREPLMY
FENNLISTLNLLEELGRTPCRKFVFS
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mRNA from alignment at P-wetherbeei_contig736:1..378-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig736.1.1 ID=mRNA_P-wetherbeei_contig736.1.1|Name=mRNA_P-wetherbeei_contig736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig736:1..378- (Phaeothamnion wetherbeei SAG_119_79)
AAGTATATCCTCGTGGCCGGCGGCGCGGGCTACATTGGCTCCCACACTGC
GCTGCTCCTACTGGCAGACGGCTACGACGTCGTGGTGCTCGACAACCTCA
TCAACAGCAGCGAGGAGAGCCTCCACCGTGTACGCAAGCTGGCGGGGTGC
GGCGAGGAGCGGCTGCGCTTCTTCAAGACGGAGCTCTGCGACCGGGATGC
CTTGAGGTCGACCCTGGCGCAGCTGCCGCCGTTCCACGCCTGCATCCACT
TCGCCGGCCTGAAAGCTGTCGGAGAGAGCGTCCGAGAACCGTTAATGTAC
TTTGAGAACAACCTCATCAGCACCCTCAATCTGTTGGAAGAGCTGGGCCG
GACGCCGTGCCGCAAGTTTGTATTTTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig736:1..378-

>mRNA_P-wetherbeei_contig736.1.1 ID=mRNA_P-wetherbeei_contig736.1.1|Name=mRNA_P-wetherbeei_contig736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig736:1..378- (Phaeothamnion wetherbeei SAG_119_79)
AAGTATATCCTCGTGGCCGGCGGCGCGGGCTACATTGGCTCCCACACTGC
GCTGCTCCTACTGGCAGACGGCTACGACGTCGTGGTGCTCGACAACCTCA
TCAACAGCAGCGAGGAGAGCCTCCACCGTGTACGCAAGCTGGCGGGGTGC
GGCGAGGAGCGGCTGCGCTTCTTCAAGACGGAGCTCTGCGACCGGGATGC
CTTGAGGTCGACCCTGGCGCAGCTGCCGCCGTTCCACGCCTGCATCCACT
TCGCCGGCCTGAAAGCTGTCGGAGAGAGCGTCCGAGAACCGTTAATGTAC
TTTGAGAACAACCTCATCAGCACCCTCAATCTGTTGGAAGAGCTGGGCCG
GACGCCGTGCCGCAAGTTTGTATTTTCG
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