mRNA_P-wetherbeei_contig7353.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7353.2.1
Unique NamemRNA_P-wetherbeei_contig7353.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: D7FR95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR95_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.880e-35
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    4 MLGLEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWENGSADLHD 291
            M  LEG+GV +HLYEF+ C DEL++RP +N+ DT+VY+FGQPV WYFT  DG++KKK KTNIIN KIE+ F + S G+ +VAYYISW +  +   D
Sbjct:    1 MYSLEGDGVCEHLYEFISCKDELSFRPTINIADTIVYKFGQPVSWYFTGVDGKVKKKFKTNIINTKIEEAFVKASVGSDIVAYYISWTSNGSKYQD 96          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: A0A836CLN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN6_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.580e-31
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   13 LEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSG-------------------GATVVAYYISWENGSADLHDGAKTDHALA 318
            + G+GV   LYE+LWC DE+++ P +NVPDTVVY++GQPVHWYFTA DG +KKKL++N+ NAKIE+ F +K+                    G+ VVAYYISWE   AD   G K++ A A
Sbjct:    1 IAGDGVCISLYEYLWCKDEISFSPQINVPDTVVYKYGQPVHWYFTAMDGTIKKKLRSNMTNAKIEESFLKKAHAQAPKTSKSKHHPQDALLEGSDVVAYYISWETNGADA--GNKSEQAAA 119          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: A0A397AS04_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AS04_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.700e-30
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   10 GLEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWENGSADLH 288
            GLEG+GV ++L+ +LWC DE    P++ VPDTVVY+F QP  WYFT++ G++KKK K ++ N +IE EFCRKS G  +VAYYI   NG + L+
Sbjct:    8 GLEGDGVVENLFYYLWCKDEFGGGPSLLVPDTVVYKFTQPAFWYFTSKSGKVKKKAKASLTNVQIEKEFCRKSCGVDIVAYYIYMLNGMSSLN 100          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: A0A397DGK7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DGK7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.410e-30
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   10 GLEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWENGSADLH 288
            GLEG+GV ++L+ +LWC DE    P++ +PDTVVY+F QP  WYFT++ G++KKK K ++ N +IE EFCRKS G  +VAYYI   NG + L+
Sbjct:    8 GLEGDGVVENLFYYLWCKDEFGGGPSLLIPDTVVYKFTQPAFWYFTSKSGKVKKKAKASLTNVQIEKEFCRKSCGVDIVAYYIYMLNGMSSLN 100          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: A0A7S2CLG5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLG5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.980e-26
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 GMLGLEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWENGSA 279
            G+  + G+GVS   +  LW  DELN+ P +N+PDTV+++FGQ V WYFT  DG+LKKK K N++N +IE+ F R   G+ +VAYYIS E   A
Sbjct:    3 GLHSVHGDGVSDQFFHLLWSKDELNFGPTINIPDTVIFKFGQAVAWYFTGVDGKLKKKNKQNLVNVRIEEAFTRHVIGSDIVAYYISTETDDA 95          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: A0A418AYB0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AYB0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.330e-26
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 GMLGLEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWENGSADLHDGAKTDHALAAS 324
            G   LEG+GV ++L+ +LWC DE    P++ +PDTVVY+F QP  WYFT++ G++KKK K ++ N +IE EFCRKS G  +VAYYI   NG+  +       + +AAS
Sbjct:  755 GNWSLEGDGVVENLFYYLWCKDEFGGGPSLLMPDTVVYKFTQPAFWYFTSKSGKVKKKAKASLTNVQIEKEFCRKSCGVDIVAYYIYMLNGTTAISSRGAPFNTMAAS 862          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: W4GQQ8_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQQ8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.620e-25
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   10 GLEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYI 258
            GLEG+GV ++L+ +LWC DE    P++ +PDTVVY+F QP  WYFT+  G++KKK+K ++ N +IE EFCRKS G  +VAYYI
Sbjct:    8 GLEGDGVVENLFYYLWCKDEFGGGPSLLIPDTVVYKFTQPAFWYFTSTSGKVKKKVKASLTNVQIEKEFCRKSCGVDIVAYYI 90          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: A0A1V9ZF24_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZF24_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.250e-25
Identity = 44/86 (51.16%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   13 LEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWEN 270
            LEG+G+ ++L+ +LWC DE    P++ +PDT+VY+F QP +WYFT++ G++KKK KT++ N +IE EFCRK  G  +VAYY+  EN
Sbjct:    9 LEGDGLVENLFYYLWCKDEFGGGPSLLIPDTIVYKFTQPAYWYFTSKSGKVKKKSKTSLANVQIEKEFCRKLCGIDIVAYYLYMEN 94          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: T0S7F0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S7F0_SAPDV)

HSP 1 Score: 107 bits (267), Expect = 7.230e-25
Identity = 43/86 (50.00%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   13 LEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWEN 270
            L+G+G+ ++L+ +LWC DE    P++ +PDT++Y+F QP +WYFT++ G++KKK KT++ N +IE EFCRK  G  +VAYYI  EN
Sbjct:    9 LDGDGLVENLFYYLWCKDEFGGGPSLLIPDTIIYKFTQPAYWYFTSKSGKVKKKAKTSLANVQIEKEFCRKLCGIDIVAYYIYMEN 94          
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Match: A0A1V9Z6W2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6W2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.900e-25
Identity = 43/86 (50.00%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   13 LEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQDGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWEN 270
            L+G+G+ ++L+ +LWC DE    P++ +PDT++Y+F QP +WYFT++ G++KKK KT++ N +IE EFCRK  G  +VAYYI  EN
Sbjct:    9 LQGDGLVENLFYYLWCKDEFGGGPSLLIPDTIIYKFTQPAYWYFTSKSGKVKKKSKTSLANVQIEKEFCRKLCGIDIVAYYIYMEN 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7353.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR95_ECTSI1.880e-3558.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLN6_9STRA4.580e-3149.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A397AS04_9STRA1.700e-3053.76Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A397DGK7_9STRA2.410e-3052.69Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S2CLG5_9STRA4.980e-2650.54Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A418AYB0_9STRA6.330e-2647.22Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GQQ8_9STRA1.620e-2555.42Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A1V9ZF24_9STRA5.250e-2551.16Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0S7F0_SAPDV7.230e-2550.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9Z6W2_9STRA9.900e-2550.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7353contigP-wetherbeei_contig7353:2334..2765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FR95
Model size327
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.96e-36
EggNOG OGs28Q4D@1|root,2QWT8@2759|Eukaryota
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.9135494-UTR-P-wetherbeei_contig7353:2333..23361683186975.9135494-UTR-P-wetherbeei_contig7353:2333..2336Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7353 2334..2336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.9243834-CDS-P-wetherbeei_contig7353:2336..24331683186975.9243834-CDS-P-wetherbeei_contig7353:2336..2433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7353 2337..2433 +
1683186975.9345043-CDS-P-wetherbeei_contig7353:2538..27651683186975.9345043-CDS-P-wetherbeei_contig7353:2538..2765Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7353 2539..2765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7353.2.1prot_P-wetherbeei_contig7353.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7353 2337..2765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7353.2.1

>prot_P-wetherbeei_contig7353.2.1 ID=prot_P-wetherbeei_contig7353.2.1|Name=mRNA_P-wetherbeei_contig7353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MLGLEGNGVSQHLYEFLWCADELNYRPAVNVPDTVVYRFGQPVHWYFTAQ
DGRLKKKLKTNIINAKIEDEFCRKSGGATVVAYYISWENGSADLHDGAKT
DHALAASA
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mRNA from alignment at P-wetherbeei_contig7353:2334..2765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7353.2.1 ID=mRNA_P-wetherbeei_contig7353.2.1|Name=mRNA_P-wetherbeei_contig7353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig7353:2334..2765+ (Phaeothamnion wetherbeei SAG_119_79)
GGGATGCTCGGTCTGGAGGGCAATGGGGTGTCCCAACACCTCTATGAGTT TTTGTGGTGCGCCGACGAGCTTAATTACAGGCCCGCGGTCAACGTCCCAG GTGTGCGATGTCATCCCACCCACGAAGCCGCAGCGAAGCGAATCCATAAT TTGCTGCGCCTACGGCTTTGCTAATTGTTTGCATCTCTGGTCACCATGAT GGCAGATACGGTGGTCTACCGGTTCGGCCAGCCAGTGCATTGGTACTTCA CTGCTCAAGACGGCCGCCTTAAGAAGAAGCTCAAGACCAACATCATCAAT GCCAAAATTGAGGACGAGTTTTGCCGGAAGAGCGGTGGTGCCACGGTCGT TGCGTATTATATCTCGTGGGAGAACGGCTCGGCAGATCTCCACGACGGTG CGAAGACCGACCATGCCCTGGCTGCTTCGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7353:2334..2765+

>mRNA_P-wetherbeei_contig7353.2.1 ID=mRNA_P-wetherbeei_contig7353.2.1|Name=mRNA_P-wetherbeei_contig7353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig7353:2334..2765+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGTCTGGAGGGCAATGGGGTGTCCCAACACCTCTATGAGTTTTT
GTGGTGCGCCGACGAGCTTAATTACAGGCCCGCGGTCAACGTCCCAGATA
CGGTGGTCTACCGGTTCGGCCAGCCAGTGCATTGGTACTTCACTGCTCAA
GACGGCCGCCTTAAGAAGAAGCTCAAGACCAACATCATCAATGCCAAAAT
TGAGGACGAGTTTTGCCGGAAGAGCGGTGGTGCCACGGTCGTTGCGTATT
ATATCTCGTGGGAGAACGGCTCGGCAGATCTCCACGACGGTGCGAAGACC
GACCATGCCCTGGCTGCTTCGGCT
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