mRNA_P-wetherbeei_contig7352.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7352.1.1
Unique NamemRNA_P-wetherbeei_contig7352.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7352.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7352contigP-wetherbeei_contig7352:538..3114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2577
Hectar predicted targeting categoryother localisation
Exons1
Cds size2577
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.8282876-CDS-P-wetherbeei_contig7352:537..31141683186975.8282876-CDS-P-wetherbeei_contig7352:537..3114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7352 538..3114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7352.1.1prot_P-wetherbeei_contig7352.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7352 538..3114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7352.1.1

>prot_P-wetherbeei_contig7352.1.1 ID=prot_P-wetherbeei_contig7352.1.1|Name=mRNA_P-wetherbeei_contig7352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=859bp
MAAALVVGRGEQAVLAGRLAAANAATDDARREAAWLRGVLDAWHRRFVAP
AILVAESDGGGNTEQDDGFNARGDARRRRPGGAAAVAAAAEVAAERWERR
ALHAETVAAAVKAAAAAAENEVARLHALNMQLRGDEARARTGLDGRLAAA
VAAVRRHCDGDVAAARETMAAERDKFKRDVAELMARVASQAAELTDLSAR
NGELEAAAVQRRLAGLPPATPAAALAAAGAEPGSAAVLGATDATGSTGGD
ATSAVVAEAAARLAEEKRRLQDMCHGLAVNLRHEAAATATAECECERLVD
AVAAARAEAARLQAALDVRTAALAALAATLRQLEAAAYSGRGRCRCSPSR
TGGGALVSGEEASDGGSSEEQMGNGEVRERDAPGTAAATTTYVDQDASAA
PAGTPSVGQALISAQLAQADLQRRLAAAAVAEVELRRILERRERCIEALR
REVGARGGGEPARLRPSAAAGGPTDAVAAAGDGDDSGDGGGDGRAAALRR
QVAEQGAVIRRLELALAEATAIGGTAAAVVVAAEDTAAALFGAAGRNNSM
AQPAAAAAVAAYCPLCSQLQRQVDEAERRRLAAEAAADDLRARIRRSNGG
GWSLLWGSSMLPLPPLRPPPAESEAVGPATGGVARRTKRGRAGASATEDQ
EQWETGSLDSLPDVLRRHGTRVSEDTAAGGGDGTKASSRDDGRDSSIGCG
IIDDGEDDHREHDRACTESGPKVQSLSMDVEALQQQVDRLVSCVAAVAAN
AGAANAGSGSGGGGGGSATARPGQPAGCRRDSFDLDLAGADLLPWENGAA
SSTGGGGGDGNNGNSAWNGDVRSLLGRLRPRLAELRRRVTAAEGWESEVL
ALRTELMRR
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mRNA from alignment at P-wetherbeei_contig7352:538..3114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7352.1.1 ID=mRNA_P-wetherbeei_contig7352.1.1|Name=mRNA_P-wetherbeei_contig7352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2577bp|location=Sequence derived from alignment at P-wetherbeei_contig7352:538..3114+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGCACTGGTGGTCGGCCGCGGCGAGCAGGCAGTGCTGGCGGG
CCGCCTCGCCGCGGCTAATGCCGCCACCGACGACGCCCGCCGCGAGGCGG
CCTGGCTGCGGGGCGTTCTGGACGCTTGGCACCGCCGCTTTGTGGCGCCG
GCCATCTTGGTGGCGGAGAGCGATGGCGGCGGGAACACTGAACAGGACGA
CGGTTTCAACGCCCGCGGCGACGCTCGAAGACGACGGCCCGGCGGCGCAG
CGGCGGTCGCGGCGGCCGCTGAAGTTGCCGCCGAGCGGTGGGAGCGCCGC
GCACTCCACGCAGAAACGGTAGCCGCGGCGGTAAAGGCGGCCGCCGCAGC
CGCCGAGAATGAGGTGGCGAGGCTGCACGCGCTCAACATGCAACTGCGTG
GCGACGAGGCGCGGGCGCGGACGGGGCTGGATGGGCGGCTGGCGGCGGCG
GTGGCAGCGGTGCGGCGGCACTGCGACGGCGACGTGGCGGCGGCGCGCGA
GACGATGGCAGCGGAGCGCGACAAGTTCAAGCGGGACGTGGCAGAGCTGA
TGGCCCGCGTGGCGTCGCAGGCCGCCGAGCTCACCGACCTTTCCGCCCGG
AACGGCGAGCTCGAGGCGGCCGCCGTGCAGCGCCGGCTGGCGGGACTGCC
ACCAGCAACGCCAGCAGCAGCACTGGCGGCGGCTGGAGCAGAACCTGGAT
CGGCCGCGGTTCTTGGGGCAACAGATGCTACCGGCAGTACGGGTGGCGAC
GCCACGTCGGCGGTGGTGGCAGAGGCGGCAGCCAGGCTGGCGGAGGAGAA
GCGGCGGCTGCAGGACATGTGCCATGGGCTGGCAGTGAACCTGCGGCACG
AGGCGGCAGCGACGGCGACGGCGGAATGCGAGTGCGAGCGTCTCGTCGAT
GCTGTCGCCGCCGCGAGGGCCGAGGCGGCGCGTCTGCAGGCCGCCCTCGA
TGTCCGGACGGCGGCTCTGGCCGCTTTGGCGGCGACGCTGCGCCAGCTCG
AAGCCGCGGCATACTCCGGCCGCGGGCGCTGCCGCTGCAGTCCAAGCCGC
ACTGGCGGCGGAGCGCTTGTGTCCGGCGAGGAGGCGAGCGACGGCGGCAG
TAGCGAAGAGCAGATGGGCAATGGAGAGGTCAGAGAACGCGATGCGCCTG
GGACAGCGGCGGCGACGACAACATACGTCGATCAGGATGCTTCTGCGGCC
CCTGCAGGGACGCCGTCCGTAGGGCAGGCGCTCATTTCGGCTCAGCTGGC
GCAGGCAGATCTACAGCGGCGGCTGGCAGCGGCAGCGGTCGCCGAAGTCG
AGCTGCGCCGCATCCTGGAGCGGCGGGAGCGCTGCATCGAGGCGCTCAGG
CGAGAAGTCGGTGCCAGGGGTGGAGGAGAGCCGGCGCGGCTCCGACCGTC
AGCCGCCGCGGGCGGGCCCACGGATGCTGTGGCGGCGGCGGGCGACGGCG
ACGATAGTGGTGACGGTGGCGGTGACGGCCGGGCGGCGGCGTTGCGGCGG
CAAGTGGCAGAGCAAGGCGCTGTAATACGGCGGCTGGAGCTCGCGCTGGC
GGAGGCGACGGCGATTGGCGGGACGGCTGCGGCCGTGGTGGTGGCGGCGG
AGGATACCGCTGCCGCCTTGTTTGGAGCCGCCGGTCGGAACAACAGCATG
GCGCAACCGGCGGCAGCGGCGGCGGTCGCGGCATATTGCCCGCTGTGCTC
TCAGCTGCAGCGGCAGGTGGATGAAGCGGAACGGCGACGGCTGGCGGCGG
AGGCCGCAGCCGACGACCTGCGGGCTCGCATCCGGCGCAGCAATGGCGGG
GGTTGGTCGTTGTTGTGGGGATCCAGCATGCTCCCGCTGCCACCGCTGCG
GCCACCTCCGGCTGAGAGCGAGGCCGTTGGCCCCGCCACTGGGGGCGTGG
CGCGCCGAACCAAGCGGGGAAGGGCCGGCGCGAGCGCGACCGAAGATCAG
GAACAATGGGAAACGGGATCGCTCGACTCGCTGCCGGACGTTCTGCGCCG
TCATGGCACCAGAGTCAGCGAGGACACAGCCGCCGGCGGTGGCGACGGGA
CCAAGGCCAGCAGTCGCGATGATGGTCGCGACTCTAGCATCGGCTGCGGC
ATCATCGACGATGGCGAAGATGATCATCGCGAACACGACAGGGCCTGCAC
GGAAAGCGGCCCAAAGGTGCAATCGCTCTCCATGGATGTTGAAGCGCTGC
AGCAGCAGGTAGATCGCCTCGTGAGCTGCGTCGCCGCCGTCGCCGCCAAC
GCCGGCGCCGCCAATGCTGGCAGCGGCAGCGGTGGCGGCGGCGGCGGCAG
TGCGACGGCGCGTCCGGGGCAACCAGCGGGGTGCCGCCGCGACTCTTTCG
ACTTGGACTTGGCCGGTGCGGACTTGTTGCCGTGGGAGAATGGTGCCGCA
AGCAGTACCGGTGGCGGCGGTGGCGATGGAAACAATGGGAACAGCGCTTG
GAATGGCGACGTCCGGTCGCTGCTCGGCCGTCTCCGCCCGCGGCTGGCGG
AGCTTCGGCGGCGCGTGACTGCGGCGGAGGGATGGGAGTCCGAAGTGCTG
GCGCTGCGCACAGAGCTGATGAGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7352:538..3114+

>mRNA_P-wetherbeei_contig7352.1.1 ID=mRNA_P-wetherbeei_contig7352.1.1|Name=mRNA_P-wetherbeei_contig7352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2577bp|location=Sequence derived from alignment at P-wetherbeei_contig7352:538..3114+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGCACTGGTGGTCGGCCGCGGCGAGCAGGCAGTGCTGGCGGG
CCGCCTCGCCGCGGCTAATGCCGCCACCGACGACGCCCGCCGCGAGGCGG
CCTGGCTGCGGGGCGTTCTGGACGCTTGGCACCGCCGCTTTGTGGCGCCG
GCCATCTTGGTGGCGGAGAGCGATGGCGGCGGGAACACTGAACAGGACGA
CGGTTTCAACGCCCGCGGCGACGCTCGAAGACGACGGCCCGGCGGCGCAG
CGGCGGTCGCGGCGGCCGCTGAAGTTGCCGCCGAGCGGTGGGAGCGCCGC
GCACTCCACGCAGAAACGGTAGCCGCGGCGGTAAAGGCGGCCGCCGCAGC
CGCCGAGAATGAGGTGGCGAGGCTGCACGCGCTCAACATGCAACTGCGTG
GCGACGAGGCGCGGGCGCGGACGGGGCTGGATGGGCGGCTGGCGGCGGCG
GTGGCAGCGGTGCGGCGGCACTGCGACGGCGACGTGGCGGCGGCGCGCGA
GACGATGGCAGCGGAGCGCGACAAGTTCAAGCGGGACGTGGCAGAGCTGA
TGGCCCGCGTGGCGTCGCAGGCCGCCGAGCTCACCGACCTTTCCGCCCGG
AACGGCGAGCTCGAGGCGGCCGCCGTGCAGCGCCGGCTGGCGGGACTGCC
ACCAGCAACGCCAGCAGCAGCACTGGCGGCGGCTGGAGCAGAACCTGGAT
CGGCCGCGGTTCTTGGGGCAACAGATGCTACCGGCAGTACGGGTGGCGAC
GCCACGTCGGCGGTGGTGGCAGAGGCGGCAGCCAGGCTGGCGGAGGAGAA
GCGGCGGCTGCAGGACATGTGCCATGGGCTGGCAGTGAACCTGCGGCACG
AGGCGGCAGCGACGGCGACGGCGGAATGCGAGTGCGAGCGTCTCGTCGAT
GCTGTCGCCGCCGCGAGGGCCGAGGCGGCGCGTCTGCAGGCCGCCCTCGA
TGTCCGGACGGCGGCTCTGGCCGCTTTGGCGGCGACGCTGCGCCAGCTCG
AAGCCGCGGCATACTCCGGCCGCGGGCGCTGCCGCTGCAGTCCAAGCCGC
ACTGGCGGCGGAGCGCTTGTGTCCGGCGAGGAGGCGAGCGACGGCGGCAG
TAGCGAAGAGCAGATGGGCAATGGAGAGGTCAGAGAACGCGATGCGCCTG
GGACAGCGGCGGCGACGACAACATACGTCGATCAGGATGCTTCTGCGGCC
CCTGCAGGGACGCCGTCCGTAGGGCAGGCGCTCATTTCGGCTCAGCTGGC
GCAGGCAGATCTACAGCGGCGGCTGGCAGCGGCAGCGGTCGCCGAAGTCG
AGCTGCGCCGCATCCTGGAGCGGCGGGAGCGCTGCATCGAGGCGCTCAGG
CGAGAAGTCGGTGCCAGGGGTGGAGGAGAGCCGGCGCGGCTCCGACCGTC
AGCCGCCGCGGGCGGGCCCACGGATGCTGTGGCGGCGGCGGGCGACGGCG
ACGATAGTGGTGACGGTGGCGGTGACGGCCGGGCGGCGGCGTTGCGGCGG
CAAGTGGCAGAGCAAGGCGCTGTAATACGGCGGCTGGAGCTCGCGCTGGC
GGAGGCGACGGCGATTGGCGGGACGGCTGCGGCCGTGGTGGTGGCGGCGG
AGGATACCGCTGCCGCCTTGTTTGGAGCCGCCGGTCGGAACAACAGCATG
GCGCAACCGGCGGCAGCGGCGGCGGTCGCGGCATATTGCCCGCTGTGCTC
TCAGCTGCAGCGGCAGGTGGATGAAGCGGAACGGCGACGGCTGGCGGCGG
AGGCCGCAGCCGACGACCTGCGGGCTCGCATCCGGCGCAGCAATGGCGGG
GGTTGGTCGTTGTTGTGGGGATCCAGCATGCTCCCGCTGCCACCGCTGCG
GCCACCTCCGGCTGAGAGCGAGGCCGTTGGCCCCGCCACTGGGGGCGTGG
CGCGCCGAACCAAGCGGGGAAGGGCCGGCGCGAGCGCGACCGAAGATCAG
GAACAATGGGAAACGGGATCGCTCGACTCGCTGCCGGACGTTCTGCGCCG
TCATGGCACCAGAGTCAGCGAGGACACAGCCGCCGGCGGTGGCGACGGGA
CCAAGGCCAGCAGTCGCGATGATGGTCGCGACTCTAGCATCGGCTGCGGC
ATCATCGACGATGGCGAAGATGATCATCGCGAACACGACAGGGCCTGCAC
GGAAAGCGGCCCAAAGGTGCAATCGCTCTCCATGGATGTTGAAGCGCTGC
AGCAGCAGGTAGATCGCCTCGTGAGCTGCGTCGCCGCCGTCGCCGCCAAC
GCCGGCGCCGCCAATGCTGGCAGCGGCAGCGGTGGCGGCGGCGGCGGCAG
TGCGACGGCGCGTCCGGGGCAACCAGCGGGGTGCCGCCGCGACTCTTTCG
ACTTGGACTTGGCCGGTGCGGACTTGTTGCCGTGGGAGAATGGTGCCGCA
AGCAGTACCGGTGGCGGCGGTGGCGATGGAAACAATGGGAACAGCGCTTG
GAATGGCGACGTCCGGTCGCTGCTCGGCCGTCTCCGCCCGCGGCTGGCGG
AGCTTCGGCGGCGCGTGACTGCGGCGGAGGGATGGGAGTCCGAAGTGCTG
GCGCTGCGCACAGAGCTGATGAGGCGG
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